Wall clock time and date at job start Tue Mar 31 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47641 * 2 1 4 4 C 1.46503 * 119.99484 * 269.99936 * 3 2 1 5 5 C 1.53002 * 109.47157 * 269.99623 * 4 3 2 6 6 C 1.34774 * 120.00147 * 89.99793 * 3 2 1 7 7 O 1.21278 * 119.99815 * 180.02562 * 6 3 2 8 8 C 1.50701 * 119.99927 * 359.97438 * 6 3 2 9 9 N 1.46503 * 109.46783 * 179.97438 * 8 6 3 10 10 C 1.46501 * 120.00081 * 270.00101 * 9 8 6 11 11 C 1.38819 * 119.99717 * 90.00679 * 9 8 6 12 12 C 1.39798 * 119.58821 * 356.84586 * 11 9 8 13 13 C 1.38592 * 119.49525 * 179.97438 * 12 11 9 14 14 C 1.38396 * 118.68020 * 359.73028 * 13 12 11 15 15 C 1.40551 * 119.14502 * 0.53590 * 14 13 12 16 16 C 1.41312 * 119.78272 * 179.73151 * 15 14 13 17 17 H 1.08006 * 120.00061 * 359.94429 * 16 15 14 18 18 C 1.40024 * 120.00175 * 179.97438 * 16 15 14 19 19 N 1.30747 * 120.00263 * 192.18525 * 18 16 15 20 20 Si 1.86800 * 119.99915 * 11.91165 * 18 16 15 21 21 H 1.48501 * 109.47115 * 174.69992 * 20 18 16 22 22 H 1.48497 * 109.47100 * 294.70197 * 20 18 16 23 23 H 1.48503 * 109.47321 * 54.70067 * 20 18 16 24 24 N 1.31958 * 119.58654 * 176.82828 * 11 9 8 25 25 H 1.08995 * 109.46490 * 59.99918 * 1 2 3 26 26 H 1.08995 * 109.47536 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47082 * 300.00439 * 1 2 3 28 28 H 1.09001 * 109.47082 * 239.99561 * 2 1 3 29 29 H 1.09007 * 109.46796 * 119.99893 * 2 1 3 30 30 H 1.08998 * 109.47253 * 29.99765 * 4 3 2 31 31 H 1.09005 * 109.46876 * 149.99909 * 4 3 2 32 32 H 1.09002 * 109.46989 * 300.00671 * 5 4 3 33 33 H 1.08996 * 109.46836 * 60.00189 * 5 4 3 34 34 H 1.08993 * 109.47137 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46611 * 60.00712 * 8 6 3 36 36 H 1.08997 * 109.47641 * 300.00254 * 8 6 3 37 37 H 1.09002 * 109.46848 * 264.76997 * 10 9 8 38 38 H 1.09001 * 109.47169 * 24.77115 * 10 9 8 39 39 H 1.09001 * 109.46642 * 144.77155 * 10 9 8 40 40 H 1.08007 * 120.25025 * 359.95975 * 12 11 9 41 41 H 1.08001 * 120.66188 * 180.02562 * 13 12 11 42 42 H 1.08000 * 120.42148 * 180.28254 * 14 13 12 43 43 H 0.97001 * 119.99625 * 354.57699 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.7077 1.8311 -1.7105 6 6 2.2431 2.0165 1.1672 7 8 2.6470 3.1601 1.1671 8 6 1.9913 1.3063 2.4723 9 7 2.3094 2.2037 3.5858 10 6 3.6642 2.2285 4.1425 11 6 1.3269 3.0305 4.1133 12 6 0.0551 3.0483 3.5332 13 6 -0.9245 3.8740 4.0618 14 6 -0.6120 4.6570 5.1593 15 6 0.6865 4.5989 5.6942 16 6 1.0219 5.3968 6.8112 17 1 0.2817 6.0492 7.2506 18 6 2.3140 5.3422 7.3480 19 7 2.5626 5.8871 8.5103 20 14 3.6808 4.4842 6.4072 21 1 4.9687 4.6751 7.1214 22 1 3.3792 3.0335 6.3093 23 1 3.7810 5.0621 5.0429 24 7 1.6051 3.7895 5.1563 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.5819 1.6875 -2.0284 31 1 2.0958 3.1409 -1.1385 32 1 4.3885 2.2152 -0.9508 33 1 3.8746 0.7619 -1.8407 34 1 3.8895 2.3452 -2.6542 35 1 2.6212 0.4186 2.5302 36 1 0.9432 1.0126 2.5299 37 1 3.7138 1.5669 5.0074 38 1 4.3739 1.8922 3.3866 39 1 3.9130 3.2449 4.4479 40 1 -0.1623 2.4235 2.6794 41 1 -1.9135 3.9024 3.6287 42 1 -1.3552 5.3072 5.5967 43 1 1.8734 6.3966 8.9644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116285097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:28 Heat of formation + Delta-G solvation = -15.479110 kcal Electronic energy + Delta-G solvation = -24134.330908 eV Core-core repulsion = 20792.796474 eV Total energy + Delta-G solvation = -3341.534434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33045 -40.37451 -37.59985 -36.92667 -35.52366 -33.33994 -32.89682 -31.61625 -30.67120 -29.48532 -27.50248 -26.24391 -24.43479 -24.05178 -23.14876 -21.92821 -20.39739 -19.83720 -18.57078 -18.24434 -17.41929 -16.99695 -16.51938 -16.14874 -15.78343 -15.61052 -15.48306 -14.88444 -14.78926 -14.66963 -14.47713 -14.20936 -13.94987 -13.75295 -13.67143 -13.44086 -13.13542 -12.95369 -12.85772 -12.74123 -12.50925 -12.34019 -11.94443 -11.89745 -11.68657 -11.63948 -11.25119 -11.09060 -10.57233 -10.27473 -9.67995 -9.60413 -9.21379 -8.47131 -6.79935 0.78083 0.99343 1.52886 1.63255 1.70172 1.85274 2.01067 2.28687 2.47127 2.68417 3.54372 3.69561 3.90901 4.05857 4.08485 4.17970 4.26047 4.28606 4.34239 4.49294 4.51831 4.55651 4.63169 4.66418 4.71875 4.77525 4.79421 4.81729 4.94482 4.97351 5.03347 5.06566 5.27560 5.37693 5.42200 5.46641 5.65275 5.69377 5.82976 5.85369 6.15487 6.26936 6.42931 6.58517 6.81142 7.24548 7.71600 7.95522 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022380 B = 0.004965 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.840745 B = 5637.631169 C = 6277.843810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 N -0.610 5.610 4 C 0.107 3.893 5 C -0.158 4.158 6 C 0.485 3.515 7 O -0.578 6.578 8 C 0.114 3.886 9 N -0.607 5.607 10 C 0.095 3.905 11 C 0.429 3.571 12 C -0.346 4.346 13 C -0.008 4.008 14 C -0.332 4.332 15 C 0.271 3.729 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.017 3.983 19 N -0.831 5.831 20 Si 1.188 2.812 21 H -0.334 1.334 22 H -0.253 1.253 23 H -0.317 1.317 24 N -0.635 5.635 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.104 0.896 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -17.817 -20.174 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 N -0.344 5.344 4 C -0.015 4.015 5 C -0.216 4.216 6 C 0.273 3.727 7 O -0.456 6.456 8 C -0.013 4.013 9 N -0.322 5.322 10 C -0.047 4.047 11 C 0.192 3.808 12 C -0.370 4.370 13 C -0.032 4.032 14 C -0.355 4.355 15 C 0.146 3.854 16 C -0.548 4.548 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.454 5.454 20 Si 1.023 2.977 21 H -0.269 1.269 22 H -0.180 1.180 23 H -0.247 1.247 24 N -0.364 5.364 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.122 0.878 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.439 -17.702 -19.651 26.488 hybrid contribution -2.662 1.631 0.071 3.122 sum -1.223 -16.071 -19.580 25.361 Atomic orbital electron populations 1.22231 0.95406 1.03535 1.01919 1.21929 0.94807 0.80247 1.05475 1.48257 1.65509 1.15652 1.05019 1.21465 0.97759 0.97211 0.85091 1.22045 0.95656 1.02854 1.01064 1.21965 0.76847 0.86710 0.87224 1.90728 1.46935 1.20176 1.87808 1.21644 1.05604 0.92292 0.81720 1.45863 1.08856 1.42549 1.34905 1.21992 0.82561 1.01360 0.98821 1.18457 0.87642 0.86924 0.87740 1.20852 0.93790 1.13490 1.08912 1.21126 0.98481 0.91239 0.92318 1.21521 0.97786 1.11099 1.05047 1.18431 0.88936 0.87818 0.90222 1.20713 0.99201 1.22571 1.12276 0.91719 1.28543 1.02864 0.94298 0.94213 1.70684 1.39092 1.24316 1.11321 0.81876 0.68169 0.77999 0.69682 1.26889 1.17961 1.24737 1.65847 1.35764 1.17314 1.17436 0.92638 0.89122 0.93697 0.87610 0.88568 0.87667 0.93351 0.95281 0.90608 0.90531 0.83962 0.85935 0.92022 0.89678 0.94459 0.85193 0.83971 0.87770 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.10 0.91 5.93 86.38 0.51 1.43 16 3 N -0.61 -11.58 2.47 -821.80 -2.03 -13.62 16 4 C 0.11 1.94 6.13 86.38 0.53 2.47 16 5 C -0.16 -2.53 10.24 71.98 0.74 -1.79 16 6 C 0.49 13.83 7.74 87.66 0.68 14.51 16 7 O -0.58 -23.68 16.01 -3.02 -0.05 -23.73 16 8 C 0.11 2.87 4.07 85.63 0.35 3.22 16 9 N -0.61 -22.95 2.47 -733.10 -1.81 -24.76 16 10 C 0.10 3.49 9.01 127.77 1.15 4.64 16 11 C 0.43 19.90 7.38 133.42 0.98 20.88 16 12 C -0.35 -14.30 9.22 22.73 0.21 -14.09 16 13 C -0.01 -0.33 10.15 22.39 0.23 -0.10 16 14 C -0.33 -16.62 9.83 22.87 0.22 -16.40 16 15 C 0.27 15.36 6.41 40.18 0.26 15.62 16 16 C -0.51 -30.99 9.54 23.46 0.22 -30.77 16 17 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 18 C 0.02 1.02 5.52 85.29 0.47 1.49 16 19 N -0.83 -49.15 13.65 21.84 0.30 -48.85 16 20 Si 1.19 62.54 22.42 68.60 1.54 64.08 16 21 H -0.33 -17.09 7.11 99.48 0.71 -16.38 16 22 H -0.25 -12.40 4.72 99.48 0.47 -11.94 16 23 H -0.32 -17.67 6.71 99.48 0.67 -17.00 16 24 N -0.63 -34.29 4.19 -186.59 -0.78 -35.08 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.04 0.60 7.22 -2.39 -0.02 0.58 16 28 H 0.11 0.50 8.07 -2.39 -0.02 0.48 16 29 H 0.10 0.63 6.44 -2.38 -0.02 0.61 16 30 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 31 H 0.05 1.22 7.42 -2.38 -0.02 1.20 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.14 2.30 7.33 -2.39 -0.02 2.28 16 36 H 0.12 2.67 5.33 -2.39 -0.01 2.66 16 37 H 0.06 2.09 7.44 -2.39 -0.02 2.07 16 38 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 39 H 0.04 1.64 3.54 -2.39 -0.01 1.63 16 40 H 0.13 4.40 6.19 -2.91 -0.02 4.38 16 41 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.28 15.99 8.73 -92.71 -0.81 15.18 16 Total: -1.00 -80.40 339.83 5.14 -75.26 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.69 Total: 6.50 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 7.29 Total: 0.20 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -4.33 Total: -122.31 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 62.54 SS G_CDS: 1.54 Total: 64.08 kcal Total: -80.40 5.14 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116285097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.780 kcal (2) G-P(sol) polarization free energy of solvation -80.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds