Wall clock time and date at job start Tue Mar 31 2020 07:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00370 * 2 1 4 4 C 1.53000 * 109.47308 * 180.02562 * 3 2 1 5 5 N 1.46890 * 109.47355 * 61.30035 * 4 3 2 6 6 C 1.46961 * 111.00119 * 51.10384 * 5 4 3 7 7 C 1.53046 * 109.36614 * 183.16710 * 6 5 4 8 8 N 1.46962 * 109.38357 * 301.63393 * 7 6 5 9 9 C 1.38819 * 111.00202 * 183.17939 * 8 7 6 10 10 C 1.39793 * 119.58447 * 170.11834 * 9 8 7 11 11 C 1.38596 * 119.48864 * 179.97438 * 10 9 8 12 12 C 1.38385 * 118.68297 * 359.97438 * 11 10 9 13 13 C 1.40555 * 119.14972 * 0.02562 * 12 11 10 14 14 C 1.41313 * 119.78578 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00003 * 346.02477 * 14 13 12 16 16 C 1.40023 * 120.00254 * 166.02990 * 14 13 12 17 17 N 1.30739 * 120.00255 * 171.11784 * 16 14 13 18 18 Si 1.86805 * 119.99759 * 351.11348 * 16 14 13 19 19 H 1.48496 * 109.47032 * 87.26966 * 18 16 14 20 20 H 1.48505 * 109.46918 * 207.27245 * 18 16 14 21 21 H 1.48500 * 109.46856 * 327.26682 * 18 16 14 22 22 N 1.31959 * 119.58237 * 349.84247 * 9 8 7 23 23 C 1.46959 * 110.87826 * 59.30529 * 8 7 6 24 24 C 1.46962 * 111.00095 * 174.92803 * 5 4 3 25 25 H 1.09001 * 109.47343 * 300.00100 * 1 2 3 26 26 H 1.09004 * 109.47075 * 59.99936 * 1 2 3 27 27 H 1.09003 * 109.47431 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47055 * 59.99702 * 3 2 1 29 29 H 1.08997 * 109.46596 * 300.00297 * 3 2 1 30 30 H 1.09003 * 109.46506 * 301.29772 * 4 3 2 31 31 H 1.08996 * 109.46723 * 181.30637 * 4 3 2 32 32 H 1.09004 * 109.46793 * 63.21304 * 6 5 4 33 33 H 1.08998 * 109.50804 * 303.14507 * 6 5 4 34 34 H 1.09004 * 109.48929 * 181.65495 * 7 6 5 35 35 H 1.09007 * 109.49037 * 61.60919 * 7 6 5 36 36 H 1.07997 * 120.25911 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.66305 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.42580 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99903 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.48188 * 60.65344 * 23 8 7 41 41 H 1.09000 * 109.48170 * 180.69048 * 23 8 7 42 42 H 1.09004 * 109.48884 * 56.84318 * 24 5 4 43 43 H 1.09003 * 109.48640 * 296.77797 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9706 0.4832 -1.2157 6 6 3.3797 1.0922 -2.4156 7 6 3.7931 0.2867 -3.6495 8 7 5.2593 0.2575 -3.7443 9 6 5.6706 -0.4054 -4.8926 10 6 7.0156 -0.3607 -5.2711 11 6 7.4241 -1.0236 -6.4176 12 6 6.4804 -1.7147 -7.1571 13 6 5.1430 -1.7223 -6.7247 14 6 4.1684 -2.4242 -7.4693 15 1 4.3923 -2.7591 -8.4714 16 6 2.9125 -2.6854 -6.9080 17 7 1.9546 -3.1773 -7.6494 18 14 2.6058 -2.3313 -5.0996 19 1 2.1729 -0.9200 -4.9381 20 1 1.5437 -3.2362 -4.5913 21 1 3.8569 -2.5563 -4.3321 22 7 4.7879 -1.0742 -5.6102 23 6 5.8497 -0.3518 -2.5444 24 6 5.4369 0.4540 -1.3105 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8558 0.6235 0.8773 31 1 3.9788 2.1801 0.0228 32 1 3.7352 2.1178 -2.5150 33 1 2.2933 1.0904 -2.3273 34 1 3.3801 0.7536 -4.5437 35 1 3.4140 -0.7317 -3.5628 36 1 7.7308 0.1862 -4.6747 37 1 8.4585 -1.0020 -6.7274 38 1 6.7677 -2.2408 -8.0555 39 1 1.0847 -3.3586 -7.2605 40 1 5.4939 -1.3773 -2.4448 41 1 6.9361 -0.3507 -2.6331 42 1 5.8499 -0.0129 -0.4163 43 1 5.8160 1.4723 -1.3976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:35 Heat of formation + Delta-G solvation = -8.780719 kcal Electronic energy + Delta-G solvation = -24214.432190 eV Core-core repulsion = 20873.188220 eV Total energy + Delta-G solvation = -3341.243970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40151 -39.87341 -38.59138 -36.58637 -35.39600 -33.17085 -32.26866 -31.94130 -30.37815 -27.90304 -27.29101 -26.45668 -25.02997 -23.33096 -23.02183 -22.20632 -20.87216 -19.64491 -18.63982 -17.53020 -17.26126 -16.80808 -16.55513 -16.46843 -16.27566 -16.08599 -15.89304 -15.34328 -15.10829 -15.07239 -14.66484 -14.28404 -14.22226 -13.57086 -13.54255 -13.09569 -12.88017 -12.75205 -12.68183 -12.64922 -12.45396 -12.27901 -12.17611 -11.92832 -11.82736 -11.57785 -11.36954 -10.57283 -10.54760 -10.26683 -9.67454 -9.26537 -9.05755 -8.89427 -6.73444 0.61316 0.83495 1.39165 1.47810 1.58056 2.32271 2.48432 2.75588 2.80706 2.99952 3.55594 3.77379 3.89265 3.93072 4.13189 4.20588 4.26903 4.31102 4.35748 4.39365 4.43955 4.50614 4.54229 4.57756 4.65039 4.68803 4.75559 4.77076 4.79323 4.85742 4.87069 4.93720 4.96223 5.05278 5.21422 5.45595 5.68750 5.73469 5.85220 5.99215 6.04558 6.08153 6.25254 6.35335 6.58141 6.71510 7.63045 8.03903 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.006094 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.796722 B = 4593.467001 C = 6103.331828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.053 3.947 4 C 0.060 3.940 5 N -0.555 5.555 6 C 0.067 3.933 7 C 0.061 3.939 8 N -0.477 5.477 9 C 0.319 3.681 10 C -0.285 4.285 11 C -0.027 4.027 12 C -0.289 4.289 13 C 0.248 3.752 14 C -0.453 4.453 15 H 0.075 0.925 16 C 0.052 3.948 17 N -0.836 5.836 18 Si 1.056 2.944 19 H -0.267 1.267 20 H -0.334 1.334 21 H -0.291 1.291 22 N -0.611 5.611 23 C 0.063 3.937 24 C 0.068 3.932 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.294 0.706 40 H 0.018 0.982 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 10.577 17.621 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.023 4.023 4 C -0.067 4.067 5 N -0.281 5.281 6 C -0.061 4.061 7 C -0.067 4.067 8 N -0.197 5.197 9 C 0.086 3.914 10 C -0.309 4.309 11 C -0.052 4.052 12 C -0.311 4.311 13 C 0.122 3.878 14 C -0.485 4.485 15 H 0.093 0.907 16 C -0.166 4.166 17 N -0.461 5.461 18 Si 0.893 3.107 19 H -0.194 1.194 20 H -0.268 1.268 21 H -0.220 1.220 22 N -0.335 5.335 23 C -0.063 4.063 24 C -0.059 4.059 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.037 0.963 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.354 10.307 17.763 20.581 hybrid contribution 0.018 -0.064 -0.514 0.518 sum 1.373 10.243 17.249 20.108 Atomic orbital electron populations 1.22865 0.80449 1.03213 1.00617 1.87994 1.20480 1.28593 1.95457 1.22817 0.93443 0.84859 1.01185 1.22219 0.93668 0.98185 0.92602 1.62077 1.08754 1.54899 1.02355 1.22135 0.99837 0.95849 0.88307 1.22376 0.86792 0.99454 0.98056 1.59748 1.09699 1.48863 1.01415 1.20026 0.91073 0.88962 0.91383 1.21094 0.94318 1.12468 1.03053 1.21322 0.99376 0.91980 0.92485 1.21771 0.93415 1.10799 1.05093 1.18520 0.92557 0.89086 0.87630 1.19496 0.96334 1.31035 1.01651 0.90690 1.26893 0.94440 0.90158 1.05123 1.69639 1.03959 1.32588 1.39962 0.84093 0.73856 0.76709 0.76039 1.19357 1.26794 1.22015 1.66667 1.37694 1.16990 1.12122 1.22340 1.00421 0.95690 0.87870 1.22171 0.87048 0.99749 0.96972 0.92232 0.94211 0.89745 0.90415 0.93234 0.89055 0.91076 0.92927 0.89898 0.92175 0.95188 0.84220 0.83122 0.86664 0.89530 0.96345 0.87779 0.87593 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -10.39 10.59 -148.98 -1.58 -11.97 16 3 C 0.05 1.02 5.49 71.98 0.40 1.42 16 4 C 0.06 1.15 5.56 86.31 0.48 1.63 16 5 N -0.55 -14.95 4.71 -895.73 -4.22 -19.18 16 6 C 0.07 2.01 5.09 86.31 0.44 2.45 16 7 C 0.06 2.45 3.61 86.31 0.31 2.76 16 8 N -0.48 -18.38 4.70 -701.26 -3.30 -21.68 16 9 C 0.32 14.29 6.20 133.42 0.83 15.12 16 10 C -0.29 -11.14 9.32 22.73 0.21 -10.93 16 11 C -0.03 -1.07 10.15 22.39 0.23 -0.84 16 12 C -0.29 -13.45 9.83 22.87 0.22 -13.23 16 13 C 0.25 13.38 6.24 40.18 0.25 13.63 16 14 C -0.45 -26.51 9.69 23.46 0.23 -26.28 16 15 H 0.07 4.52 8.06 -2.91 -0.02 4.50 16 16 C 0.05 2.98 5.52 85.29 0.47 3.45 16 17 N -0.84 -47.98 13.92 21.84 0.30 -47.67 16 18 Si 1.06 54.83 22.38 68.60 1.54 56.36 16 19 H -0.27 -13.41 5.44 99.48 0.54 -12.87 16 20 H -0.33 -16.91 7.11 99.48 0.71 -16.20 16 21 H -0.29 -16.04 6.20 99.48 0.62 -15.43 16 22 N -0.61 -31.78 3.86 -186.59 -0.72 -32.50 16 23 C 0.06 2.00 5.45 86.31 0.47 2.47 16 24 C 0.07 1.63 5.61 86.31 0.48 2.12 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.96 6.16 -2.39 -0.01 0.94 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 2.43 5.97 -2.39 -0.01 2.42 16 34 H 0.06 2.65 7.55 -2.38 -0.02 2.63 16 35 H 0.03 1.39 3.87 -2.38 -0.01 1.38 16 36 H 0.14 4.48 7.75 -2.91 -0.02 4.45 16 37 H 0.15 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.12 5.06 8.06 -2.91 -0.02 5.03 16 39 H 0.29 15.42 8.29 -92.71 -0.77 14.65 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 2.85 7.33 -2.39 -0.02 2.83 16 42 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -69.32 330.19 -0.97 -70.29 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.73 Total: 10.84 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.27 Total: -4.50 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -7.93 Total: -121.03 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.58 Total: -11.97 kcal Atomic # 14 Polarization: 54.83 SS G_CDS: 1.54 Total: 56.36 kcal Total: -69.32 -0.97 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.512 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds