Wall clock time and date at job start Tue Mar 31 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34944 * 126.03973 * 2 1 4 4 C 1.35317 * 107.74934 * 179.74827 * 3 2 1 5 5 C 1.39867 * 107.91594 * 0.39278 * 4 3 2 6 6 C 1.50702 * 125.89636 * 179.86179 * 5 4 3 7 7 C 1.53001 * 109.47176 * 124.71726 * 6 5 4 8 8 C 1.50697 * 109.47466 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99884 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.62953 * 359.71843 * 10 8 7 12 12 C 1.52762 * 109.00760 * 233.58384 * 11 10 8 13 13 C 1.53046 * 109.38514 * 305.58828 * 12 11 10 14 14 C 1.50693 * 109.45020 * 181.25129 * 13 12 11 15 15 H 1.08006 * 120.00298 * 245.39349 * 14 13 12 16 16 C 1.37879 * 119.99917 * 65.38946 * 14 13 12 17 17 N 1.31509 * 119.99934 * 9.58243 * 16 14 13 18 18 Si 1.86803 * 119.99933 * 189.57548 * 16 14 13 19 19 H 1.48498 * 109.46896 * 94.99212 * 18 16 14 20 20 H 1.48500 * 109.46887 * 214.99501 * 18 16 14 21 21 H 1.48499 * 109.47145 * 334.99380 * 18 16 14 22 22 C 1.53047 * 109.53330 * 61.23668 * 13 12 11 23 23 C 1.46927 * 120.62781 * 179.97438 * 10 8 7 24 24 N 1.30838 * 108.20583 * 359.60529 * 5 4 3 25 25 H 1.08993 * 109.47495 * 269.98002 * 1 2 3 26 26 H 1.09007 * 109.47265 * 29.98002 * 1 2 3 27 27 H 1.09005 * 109.47044 * 149.97365 * 1 2 3 28 28 H 1.08004 * 126.12324 * 359.97438 * 3 2 1 29 29 H 1.07994 * 126.03985 * 180.27212 * 4 3 2 30 30 H 1.09005 * 109.47364 * 4.72038 * 6 5 4 31 31 H 1.09002 * 109.47429 * 244.71970 * 6 5 4 32 32 H 1.09002 * 109.47141 * 300.00420 * 7 6 5 33 33 H 1.09005 * 109.46719 * 59.99918 * 7 6 5 34 34 H 1.08994 * 109.58784 * 353.41994 * 11 10 8 35 35 H 1.09006 * 109.58908 * 113.84847 * 11 10 8 36 36 H 1.08996 * 109.56698 * 185.55405 * 12 11 10 37 37 H 1.09000 * 109.38832 * 65.51432 * 12 11 10 38 38 H 1.09001 * 109.46028 * 301.21994 * 13 12 11 39 39 H 0.96999 * 120.00166 * 180.02562 * 17 16 14 40 40 H 1.09005 * 109.49351 * 178.67853 * 22 13 12 41 41 H 1.09006 * 109.52019 * 58.60842 * 22 13 12 42 42 H 1.09003 * 109.58887 * 246.15340 * 23 10 8 43 43 H 1.09000 * 109.59020 * 6.44179 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0057 5 6 3.5346 -0.7321 0.0001 6 6 4.7496 -1.6237 0.0006 7 6 4.6709 -2.5924 1.1822 8 6 5.8862 -3.4835 1.1832 9 8 6.7318 -3.3567 0.3231 10 7 6.0328 -4.4222 2.1391 11 6 5.0195 -4.5845 3.1905 12 6 5.7022 -4.5113 4.5551 13 6 6.8366 -5.5372 4.6112 14 6 7.4913 -5.4876 5.9676 15 1 8.5175 -5.1639 6.0604 16 6 6.7803 -5.8554 7.0902 17 7 5.6018 -6.4255 6.9646 18 14 7.4910 -5.5441 8.7895 19 1 6.9706 -4.2565 9.3153 20 1 7.0951 -6.6474 9.7012 21 1 8.9721 -5.4810 8.7026 22 6 7.8730 -5.2135 3.5326 23 6 7.2119 -5.2987 2.1529 24 7 2.2891 -1.1328 0.0000 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 1.9281 2.1193 -0.0004 29 1 4.4210 1.2962 0.0113 30 1 5.6482 -1.0132 0.0905 31 1 4.7860 -2.1888 -0.9307 32 1 4.6345 -2.0273 2.1136 33 1 3.7723 -3.2028 1.0923 34 1 4.2793 -3.7884 3.1107 35 1 4.5310 -5.5528 3.0809 36 1 4.9763 -4.7286 5.3386 37 1 6.1088 -3.5109 4.7031 38 1 6.4328 -6.5349 4.4391 39 1 5.1014 -6.6839 7.7543 40 1 8.6921 -5.9306 3.5884 41 1 8.2597 -4.2065 3.6895 42 1 6.9055 -6.3264 1.9570 43 1 7.9167 -4.9753 1.3869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117718803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:04 Heat of formation + Delta-G solvation = 26.536346 kcal Electronic energy + Delta-G solvation = -22929.738186 eV Core-core repulsion = 19590.025679 eV Total energy + Delta-G solvation = -3339.712507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29150 -39.64043 -36.86650 -34.60669 -33.45558 -32.13825 -31.07741 -30.20791 -29.97176 -27.29760 -26.07100 -24.31471 -22.71218 -22.14136 -21.28341 -19.95866 -19.42690 -18.17047 -17.26563 -16.69069 -16.07748 -15.73369 -15.38061 -15.25078 -14.52546 -14.23911 -13.97393 -13.60460 -13.49172 -13.07933 -12.96634 -12.83705 -12.63023 -12.62794 -12.22626 -12.09331 -11.82497 -11.45309 -11.36507 -11.18606 -10.92095 -10.63701 -10.56488 -10.37094 -10.17754 -9.66675 -9.44752 -9.26100 -9.06661 -8.94827 -8.68859 -8.34763 -7.97822 -6.05190 -4.06487 1.74374 2.36076 2.67522 3.05028 3.28796 3.36528 3.39905 3.54368 4.29780 4.42469 4.58350 4.73002 4.86551 5.03889 5.08610 5.13116 5.25792 5.26416 5.46578 5.59262 5.66323 5.76462 5.84671 5.86006 5.98154 6.07827 6.13369 6.13986 6.19332 6.29242 6.48444 6.56869 6.65477 6.84935 6.91072 7.04902 7.13335 7.21369 7.61617 7.65671 7.90380 7.96099 7.97685 8.40956 8.61109 8.97235 9.57222 11.03525 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.003235 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.232473 B = 8652.051144 C = 9495.807621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.381 5.381 3 C 0.050 3.950 4 C -0.267 4.267 5 C 0.080 3.920 6 C -0.021 4.021 7 C -0.132 4.132 8 C 0.512 3.488 9 O -0.561 6.561 10 N -0.600 5.600 11 C 0.103 3.897 12 C -0.118 4.118 13 C 0.047 3.953 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.123 4.123 23 C 0.111 3.889 24 N -0.293 5.293 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 12.883 -12.855 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.096 4.096 4 C -0.297 4.297 5 C -0.087 4.087 6 C -0.061 4.061 7 C -0.172 4.172 8 C 0.301 3.699 9 O -0.441 6.441 10 N -0.332 5.332 11 C -0.019 4.019 12 C -0.157 4.157 13 C 0.028 3.972 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.714 3.286 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.161 4.161 23 C -0.011 4.011 24 N -0.116 5.116 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.189 0.811 29 H 0.166 0.834 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.576 11.865 -13.186 20.652 hybrid contribution 0.577 0.978 1.250 1.689 sum -9.999 12.843 -11.936 20.184 Atomic orbital electron populations 1.21828 0.74408 1.04302 1.03370 1.48519 1.06562 1.03904 1.57302 1.22510 0.91259 0.93391 1.02449 1.21460 0.97053 0.94504 1.16646 1.22401 0.93305 0.94079 0.98896 1.19763 0.92058 0.95248 0.98987 1.21599 0.97554 0.97769 1.00299 1.20536 0.87669 0.80647 0.81070 1.90632 1.44508 1.70864 1.38087 1.48217 1.23211 1.34554 1.27250 1.21919 0.89983 1.01034 0.88946 1.21868 1.00547 0.99942 0.93353 1.18648 0.91058 0.94879 0.92586 1.21176 0.98441 1.44269 0.91353 0.92698 1.24954 0.95186 0.94616 0.99022 1.69950 1.13327 1.40092 1.29360 0.86672 0.79477 0.77873 0.84558 1.20752 1.21338 1.19909 1.22008 0.99406 1.00968 0.93697 1.21706 0.87120 0.92891 0.99406 1.77342 1.01362 1.07641 1.25223 0.90763 0.89672 0.89342 0.81074 0.83444 0.89175 0.89523 0.88894 0.88613 0.91320 0.91820 0.89678 0.93993 0.94736 0.93035 0.92078 0.93047 0.92256 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.84 0.69 1.30 16 2 N -0.38 -3.99 4.01 -68.16 -0.27 -4.26 16 3 C 0.05 0.46 11.49 -17.22 -0.20 0.26 16 4 C -0.27 -2.92 10.72 -40.01 -0.43 -3.35 16 5 C 0.08 1.03 6.49 -82.41 -0.53 0.50 16 6 C -0.02 -0.28 5.08 -27.88 -0.14 -0.42 16 7 C -0.13 -1.86 4.01 -27.88 -0.11 -1.97 16 8 C 0.51 8.94 7.70 -10.99 -0.08 8.86 16 9 O -0.56 -11.13 15.39 5.56 0.09 -11.04 16 10 N -0.60 -10.90 2.98 -173.01 -0.52 -11.42 16 11 C 0.10 1.86 6.31 -3.93 -0.02 1.83 16 12 C -0.12 -2.58 5.19 -26.83 -0.14 -2.72 16 13 C 0.05 1.12 1.93 -91.73 -0.18 0.94 16 14 C -0.51 -13.77 8.48 -34.44 -0.29 -14.06 16 15 H 0.05 1.48 7.77 -52.48 -0.41 1.07 16 16 C 0.06 1.72 5.19 -17.82 -0.09 1.63 16 17 N -0.89 -24.71 12.16 55.43 0.67 -24.03 16 18 Si 0.89 20.94 29.55 -169.99 -5.02 15.92 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.12 -2.54 5.30 -26.59 -0.14 -2.68 16 23 C 0.11 2.07 6.44 -3.69 -0.02 2.04 16 24 N -0.29 -3.98 12.54 33.67 0.42 -3.56 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.09 1.27 7.68 -51.93 -0.40 0.87 16 33 H 0.10 1.31 7.95 -51.93 -0.41 0.90 16 34 H 0.07 1.07 5.93 -51.93 -0.31 0.76 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 2.05 6.87 -51.93 -0.36 1.69 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -32.13 350.80 -7.92 -40.05 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.87 Total: 0.91 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.70 Total: -7.85 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.31 Total: -43.27 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.13 -7.92 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117718803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.583 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds