Wall clock time and date at job start Tue Mar 31 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34944 * 126.03973 * 2 1 4 4 C 1.35317 * 107.74934 * 179.74827 * 3 2 1 5 5 C 1.39867 * 107.91594 * 0.39278 * 4 3 2 6 6 C 1.50702 * 125.89636 * 179.86179 * 5 4 3 7 7 C 1.53001 * 109.47176 * 124.71726 * 6 5 4 8 8 C 1.50697 * 109.47466 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99884 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.62953 * 359.71843 * 10 8 7 12 12 C 1.52762 * 109.00760 * 233.58384 * 11 10 8 13 13 C 1.53046 * 109.38514 * 305.58828 * 12 11 10 14 14 C 1.50693 * 109.45020 * 181.25129 * 13 12 11 15 15 H 1.08006 * 120.00298 * 245.39349 * 14 13 12 16 16 C 1.37879 * 119.99917 * 65.38946 * 14 13 12 17 17 N 1.31509 * 119.99934 * 9.58243 * 16 14 13 18 18 Si 1.86803 * 119.99933 * 189.57548 * 16 14 13 19 19 H 1.48498 * 109.46896 * 94.99212 * 18 16 14 20 20 H 1.48500 * 109.46887 * 214.99501 * 18 16 14 21 21 H 1.48499 * 109.47145 * 334.99380 * 18 16 14 22 22 C 1.53047 * 109.53330 * 61.23668 * 13 12 11 23 23 C 1.46927 * 120.62781 * 179.97438 * 10 8 7 24 24 N 1.30838 * 108.20583 * 359.60529 * 5 4 3 25 25 H 1.08993 * 109.47495 * 269.98002 * 1 2 3 26 26 H 1.09007 * 109.47265 * 29.98002 * 1 2 3 27 27 H 1.09005 * 109.47044 * 149.97365 * 1 2 3 28 28 H 1.08004 * 126.12324 * 359.97438 * 3 2 1 29 29 H 1.07994 * 126.03985 * 180.27212 * 4 3 2 30 30 H 1.09005 * 109.47364 * 4.72038 * 6 5 4 31 31 H 1.09002 * 109.47429 * 244.71970 * 6 5 4 32 32 H 1.09002 * 109.47141 * 300.00420 * 7 6 5 33 33 H 1.09005 * 109.46719 * 59.99918 * 7 6 5 34 34 H 1.08994 * 109.58784 * 353.41994 * 11 10 8 35 35 H 1.09006 * 109.58908 * 113.84847 * 11 10 8 36 36 H 1.08996 * 109.56698 * 185.55405 * 12 11 10 37 37 H 1.09000 * 109.38832 * 65.51432 * 12 11 10 38 38 H 1.09001 * 109.46028 * 301.21994 * 13 12 11 39 39 H 0.96999 * 120.00166 * 180.02562 * 17 16 14 40 40 H 1.09005 * 109.49351 * 178.67853 * 22 13 12 41 41 H 1.09006 * 109.52019 * 58.60842 * 22 13 12 42 42 H 1.09003 * 109.58887 * 246.15340 * 23 10 8 43 43 H 1.09000 * 109.59020 * 6.44179 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0057 5 6 3.5346 -0.7321 0.0001 6 6 4.7496 -1.6237 0.0006 7 6 4.6709 -2.5924 1.1822 8 6 5.8862 -3.4835 1.1832 9 8 6.7318 -3.3567 0.3231 10 7 6.0328 -4.4222 2.1391 11 6 5.0195 -4.5845 3.1905 12 6 5.7022 -4.5113 4.5551 13 6 6.8366 -5.5372 4.6112 14 6 7.4913 -5.4876 5.9676 15 1 8.5175 -5.1639 6.0604 16 6 6.7803 -5.8554 7.0902 17 7 5.6018 -6.4255 6.9646 18 14 7.4910 -5.5441 8.7895 19 1 6.9706 -4.2565 9.3153 20 1 7.0951 -6.6474 9.7012 21 1 8.9721 -5.4810 8.7026 22 6 7.8730 -5.2135 3.5326 23 6 7.2119 -5.2987 2.1529 24 7 2.2891 -1.1328 0.0000 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 1.9281 2.1193 -0.0004 29 1 4.4210 1.2962 0.0113 30 1 5.6482 -1.0132 0.0905 31 1 4.7860 -2.1888 -0.9307 32 1 4.6345 -2.0273 2.1136 33 1 3.7723 -3.2028 1.0923 34 1 4.2793 -3.7884 3.1107 35 1 4.5310 -5.5528 3.0809 36 1 4.9763 -4.7286 5.3386 37 1 6.1088 -3.5109 4.7031 38 1 6.4328 -6.5349 4.4391 39 1 5.1014 -6.6839 7.7543 40 1 8.6921 -5.9306 3.5884 41 1 8.2597 -4.2065 3.6895 42 1 6.9055 -6.3264 1.9570 43 1 7.9167 -4.9753 1.3869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117718803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:03 Heat of formation + Delta-G solvation = 7.880878 kcal Electronic energy + Delta-G solvation = -22930.547148 eV Core-core repulsion = 19590.025679 eV Total energy + Delta-G solvation = -3340.521469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08079 -41.09833 -38.47974 -35.53982 -35.29564 -33.36027 -32.58767 -31.70221 -30.86787 -28.47419 -27.53719 -25.49882 -24.35606 -23.70585 -22.02604 -21.45689 -20.45310 -19.67992 -18.60444 -18.07188 -17.52631 -16.86656 -16.71550 -16.44309 -16.23181 -15.20982 -15.03312 -14.90590 -14.75226 -14.58010 -14.32495 -14.27842 -13.84752 -13.52057 -13.37917 -13.27576 -13.19970 -12.96250 -12.79919 -12.69774 -12.48206 -12.22140 -12.16187 -11.96589 -11.48488 -11.45056 -11.03688 -10.89868 -10.67349 -10.40269 -10.15176 -9.54025 -9.44683 -8.11882 -6.19635 0.98727 1.40726 1.43300 1.52288 1.64282 1.72898 1.82050 2.15001 2.44500 3.17901 3.46834 3.70219 3.93107 4.06309 4.15688 4.20427 4.26126 4.30438 4.40450 4.46802 4.47622 4.57163 4.61355 4.69654 4.73146 4.74676 4.87455 4.89544 4.97133 5.01250 5.09899 5.19743 5.21090 5.25266 5.37466 5.53484 5.66659 5.72743 5.97520 6.03353 6.22673 6.38437 6.51743 6.80013 6.90427 7.18600 7.46805 8.95757 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.003235 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.232473 B = 8652.051144 C = 9495.807621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.063 3.937 4 C -0.291 4.291 5 C 0.062 3.938 6 C -0.014 4.014 7 C -0.120 4.120 8 C 0.513 3.487 9 O -0.584 6.584 10 N -0.605 5.605 11 C 0.115 3.885 12 C -0.109 4.109 13 C 0.044 3.956 14 C -0.535 4.535 15 H 0.047 0.953 16 C 0.020 3.980 17 N -0.913 5.913 18 Si 0.945 3.055 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.113 4.113 23 C 0.116 3.884 24 N -0.333 5.333 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.085 0.915 28 H 0.215 0.785 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.007 0.993 39 H 0.261 0.739 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.019 14.756 -13.152 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.084 4.084 4 C -0.320 4.320 5 C -0.103 4.103 6 C -0.053 4.053 7 C -0.161 4.161 8 C 0.303 3.697 9 O -0.466 6.466 10 N -0.337 5.337 11 C -0.007 4.007 12 C -0.148 4.148 13 C 0.026 3.974 14 C -0.573 4.573 15 H 0.065 0.935 16 C -0.179 4.179 17 N -0.552 5.552 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.151 4.151 23 C -0.006 4.006 24 N -0.157 5.157 25 H 0.101 0.899 26 H 0.137 0.863 27 H 0.103 0.897 28 H 0.232 0.768 29 H 0.178 0.822 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.704 13.736 -13.487 22.529 hybrid contribution 0.887 0.415 1.323 1.646 sum -10.816 14.151 -12.165 21.569 Atomic orbital electron populations 1.22175 0.72159 1.05884 1.04457 1.48894 1.07928 1.03498 1.56306 1.23169 0.90483 0.94804 0.99930 1.21754 0.98626 0.93845 1.17774 1.22385 0.93011 0.95014 0.99871 1.19632 0.92695 0.95027 0.97972 1.21548 0.95892 0.97403 1.01214 1.21068 0.88199 0.80248 0.80191 1.90620 1.45653 1.71379 1.38922 1.48268 1.23041 1.34807 1.27547 1.21780 0.89932 1.02368 0.86645 1.21648 0.99389 0.98706 0.95036 1.18611 0.92321 0.94049 0.92460 1.21512 0.98382 1.44335 0.93089 0.93452 1.25626 0.95601 0.94426 1.02291 1.70047 1.14271 1.40668 1.30217 0.85743 0.78802 0.77825 0.80489 1.20171 1.21013 1.19665 1.21855 0.98752 1.00439 0.94052 1.21594 0.87489 0.93640 0.97909 1.77239 1.01974 1.09784 1.26731 0.89877 0.86272 0.89666 0.76840 0.82226 0.89134 0.90501 0.88075 0.87930 0.88402 0.91631 0.92129 0.94518 0.97498 0.92957 0.91890 0.93744 0.91451 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.47 127.77 1.47 2.34 16 2 N -0.38 -7.18 4.01 -369.57 -1.48 -8.66 16 3 C 0.06 0.96 11.49 83.54 0.96 1.92 16 4 C -0.29 -5.84 10.72 21.99 0.24 -5.61 16 5 C 0.06 1.56 6.49 43.10 0.28 1.84 16 6 C -0.01 -0.35 5.08 29.85 0.15 -0.20 16 7 C -0.12 -3.26 4.01 29.85 0.12 -3.14 16 8 C 0.51 17.41 7.70 87.66 0.67 18.09 16 9 O -0.58 -22.82 15.39 -3.03 -0.05 -22.86 16 10 N -0.60 -21.46 2.98 -819.67 -2.44 -23.90 16 11 C 0.11 4.03 6.31 86.22 0.54 4.57 16 12 C -0.11 -4.78 5.19 30.53 0.16 -4.62 16 13 C 0.04 2.14 1.93 -11.51 -0.02 2.12 16 14 C -0.54 -29.06 8.48 25.60 0.22 -28.84 16 15 H 0.05 2.58 7.77 -2.91 -0.02 2.55 16 16 C 0.02 1.08 5.19 84.66 0.44 1.52 16 17 N -0.91 -51.33 12.16 21.45 0.26 -51.07 16 18 Si 0.95 43.06 29.55 68.60 2.03 45.09 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.11 -4.69 5.30 30.69 0.16 -4.53 16 23 C 0.12 4.27 6.44 86.37 0.56 4.83 16 24 N -0.33 -8.69 12.54 -47.38 -0.59 -9.29 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 27 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.22 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.09 2.26 8.08 -2.38 -0.02 2.25 16 31 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 32 H 0.10 2.61 7.68 -2.39 -0.02 2.59 16 33 H 0.10 2.68 7.95 -2.38 -0.02 2.66 16 34 H 0.10 2.87 5.93 -2.39 -0.01 2.85 16 35 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.06 2.96 6.87 -2.39 -0.02 2.94 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.01 0.37 8.09 -2.39 -0.02 0.35 16 39 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 40 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.08 3.00 7.00 -2.39 -0.02 2.98 16 Total: -1.00 -69.53 350.80 4.65 -64.88 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.98 Total: 15.53 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.94 Total: -9.72 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -4.26 Total: -92.92 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.53 4.65 -64.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117718803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.764 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds