Wall clock time and date at job start Tue Mar 31 2020 07:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00671 * 2 1 4 4 C 1.39007 * 111.00036 * 123.95615 * 2 1 3 5 5 N 1.32427 * 119.70240 * 296.44964 * 4 2 1 6 6 C 1.31941 * 121.62575 * 179.97438 * 5 4 2 7 7 C 1.38065 * 120.85334 * 0.04570 * 6 5 4 8 8 C 1.38843 * 119.32736 * 359.97438 * 7 6 5 9 9 C 1.38341 * 118.50555 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.45016 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47043 * 254.73093 * 10 9 8 12 12 C 1.47439 * 111.00038 * 69.87461 * 11 10 9 13 13 C 1.54322 * 107.23353 * 123.25881 * 12 11 10 14 14 C 1.55142 * 103.01805 * 22.28122 * 13 12 11 15 15 O 1.42898 * 110.98734 * 82.47758 * 14 13 12 16 16 C 1.50693 * 110.99052 * 206.25377 * 14 13 12 17 17 H 1.08009 * 120.00009 * 118.54335 * 16 14 13 18 18 C 1.37877 * 120.00163 * 298.55075 * 16 14 13 19 19 N 1.31513 * 120.00068 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99943 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47352 * 59.99771 * 20 18 16 22 22 H 1.48501 * 109.47346 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47287 * 299.99823 * 20 18 16 24 24 C 1.47851 * 110.99822 * 190.72025 * 11 10 9 25 25 H 1.09002 * 109.46925 * 296.05061 * 1 2 3 26 26 H 1.09003 * 109.46691 * 56.04112 * 1 2 3 27 27 H 1.08995 * 109.47265 * 176.04370 * 1 2 3 28 28 H 1.08993 * 109.47926 * 185.81740 * 3 2 1 29 29 H 1.09000 * 109.46700 * 305.82278 * 3 2 1 30 30 H 1.09007 * 109.47027 * 65.81406 * 3 2 1 31 31 H 1.07995 * 119.57665 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.34213 * 180.25304 * 7 6 5 33 33 H 1.08000 * 120.74991 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47279 * 14.73426 * 10 9 8 35 35 H 1.09001 * 109.46948 * 134.72952 * 10 9 8 36 36 H 1.09004 * 109.88921 * 242.66231 * 12 11 10 37 37 H 1.09000 * 109.88666 * 3.84980 * 12 11 10 38 38 H 1.08993 * 110.70330 * 140.66400 * 13 12 11 39 39 H 1.09001 * 110.70419 * 263.72461 * 13 12 11 40 40 H 0.96703 * 114.00207 * 61.45802 * 15 14 13 41 41 H 0.97001 * 119.99946 * 179.97438 * 19 18 16 42 42 H 1.08992 * 110.37084 * 332.46211 * 24 11 10 43 43 H 1.08995 * 110.37217 * 94.80506 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9671 -0.7249 1.0764 5 7 1.7240 -0.3153 2.3121 6 6 2.1777 -0.9743 3.3612 7 6 2.9286 -2.1224 3.2058 8 6 3.2064 -2.5854 1.9266 9 6 2.7172 -1.8733 0.8461 10 6 2.9929 -2.3360 -0.5614 11 7 4.0103 -1.4694 -1.1712 12 6 5.3303 -1.6873 -0.5515 13 6 6.3078 -2.0732 -1.6816 14 6 5.6209 -1.4995 -2.9489 15 8 5.9078 -0.1079 -3.1010 16 6 6.0280 -2.2692 -4.1788 17 1 5.2828 -2.7927 -4.7595 18 6 7.3517 -2.3054 -4.5627 19 7 8.2591 -1.6678 -3.8558 20 14 7.8564 -3.2602 -6.0869 21 1 7.1540 -2.7071 -7.2727 22 1 9.3240 -3.1430 -6.2811 23 1 7.4926 -4.6901 -5.9184 24 6 4.1236 -1.7258 -2.6229 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0802 1.3442 -0.1042 29 1 1.5643 1.9261 -0.8333 30 1 1.7327 1.8615 0.9375 31 1 1.9592 -0.6108 4.3544 32 1 3.2924 -2.6576 4.0705 33 1 3.7919 -3.4807 1.7785 34 1 3.3555 -3.3637 -0.5416 35 1 2.0747 -2.2859 -1.1467 36 1 5.6677 -0.7715 -0.0660 37 1 5.2687 -2.4952 0.1776 38 1 7.2804 -1.6066 -1.5257 39 1 6.4081 -3.1563 -1.7512 40 1 6.8479 0.0902 -3.2108 41 1 9.1904 -1.6935 -4.1257 42 1 3.8367 -2.7524 -2.8503 43 1 3.5034 -1.0249 -3.1815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118201842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:50 Heat of formation + Delta-G solvation = 12.017530 kcal Electronic energy + Delta-G solvation = -24244.050740 eV Core-core repulsion = 20903.708649 eV Total energy + Delta-G solvation = -3340.342090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54022 -38.20245 -36.64694 -34.93274 -32.61512 -32.08961 -30.89871 -29.04441 -28.00300 -27.40986 -25.75841 -24.85198 -24.03817 -21.98066 -21.40542 -19.79176 -19.47132 -17.07644 -16.95203 -16.65407 -15.36589 -15.26316 -14.96648 -14.84756 -14.47435 -14.23570 -13.86847 -13.82863 -13.18771 -13.08419 -12.72358 -12.50071 -12.22231 -12.07568 -11.98735 -11.71151 -11.49772 -11.34995 -11.21680 -11.10338 -10.84652 -10.63207 -10.42282 -10.25428 -9.80438 -9.68575 -9.58446 -9.14430 -8.70475 -8.54680 -8.37116 -8.02243 -7.45722 -6.17732 -4.25845 1.14887 1.33255 3.25013 3.30018 3.33010 3.76625 3.86313 4.31888 4.53494 4.78257 4.93630 5.07269 5.10175 5.16687 5.22857 5.42307 5.51500 5.55979 5.70343 5.72946 5.79490 5.84946 5.89327 6.01988 6.06752 6.15263 6.18996 6.21093 6.25192 6.39665 6.53828 6.57193 6.75992 6.94902 7.01672 7.14296 7.46316 7.46892 7.53805 7.73633 7.84499 7.89982 8.01110 8.22545 8.76421 9.42838 9.57313 10.89005 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.004229 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.851595 B = 6619.887484 C = 7042.756817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.477 5.477 3 C 0.038 3.962 4 C 0.312 3.688 5 N -0.517 5.517 6 C 0.099 3.901 7 C -0.179 4.179 8 C -0.072 4.072 9 C -0.087 4.087 10 C 0.104 3.896 11 N -0.507 5.507 12 C 0.044 3.956 13 C -0.144 4.144 14 C 0.253 3.747 15 O -0.578 6.578 16 C -0.536 4.536 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.064 3.936 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.375 0.625 41 H 0.266 0.734 42 H 0.044 0.956 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -0.432 11.860 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.199 5.199 3 C -0.109 4.109 4 C 0.083 3.917 5 N -0.229 5.229 6 C -0.059 4.059 7 C -0.199 4.199 8 C -0.099 4.099 9 C -0.091 4.091 10 C -0.024 4.024 11 N -0.231 5.231 12 C -0.083 4.083 13 C -0.183 4.183 14 C 0.213 3.787 15 O -0.385 6.385 16 C -0.574 4.574 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.063 4.063 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.224 0.776 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.642 0.712 11.679 16.506 hybrid contribution 1.561 -1.875 -0.233 2.451 sum -10.081 -1.163 11.446 15.297 Atomic orbital electron populations 1.22383 0.86341 1.02052 1.01052 1.60079 1.07874 1.15406 1.36524 1.22307 1.01887 0.86451 1.00208 1.19657 0.93433 0.91757 0.86859 1.67697 1.22266 1.33034 0.99880 1.22404 0.94465 0.92051 0.96992 1.22037 1.01301 0.98672 0.97884 1.21533 0.97023 0.99389 0.91960 1.20611 0.96914 0.94836 0.96694 1.20935 0.97583 0.93382 0.90526 1.63563 1.04752 1.50899 1.03862 1.22843 0.89908 0.98602 0.96989 1.23247 0.98984 1.00226 0.95821 1.19507 0.88124 0.79967 0.91139 1.86153 1.30713 1.25916 1.95742 1.21531 0.93217 1.31788 1.10903 0.92208 1.24986 0.96388 0.94906 0.96730 1.69734 1.01962 1.42794 1.38962 0.86565 0.77332 0.80294 0.83249 1.20044 1.21204 1.20242 1.22950 0.98723 0.98392 0.86271 0.94676 0.90833 0.91896 0.90389 0.91137 0.94999 0.83345 0.85062 0.84914 0.94911 0.89684 0.92270 0.94974 0.90660 0.92811 0.77591 0.92400 0.93813 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.46 60.06 0.57 0.92 16 2 N -0.48 -7.10 4.25 -188.98 -0.80 -7.90 16 3 C 0.04 0.56 9.48 60.06 0.57 1.13 16 4 C 0.31 4.78 5.33 -155.01 -0.83 3.95 16 5 N -0.52 -7.54 9.50 -12.44 -0.12 -7.66 16 6 C 0.10 1.19 11.17 -17.57 -0.20 0.99 16 7 C -0.18 -1.99 10.10 -39.42 -0.40 -2.39 16 8 C -0.07 -0.93 9.11 -39.32 -0.36 -1.29 16 9 C -0.09 -1.30 4.90 -104.27 -0.51 -1.81 16 10 C 0.10 1.70 4.27 -4.98 -0.02 1.68 16 11 N -0.51 -9.81 5.15 -232.69 -1.20 -11.01 16 12 C 0.04 0.88 6.41 -2.84 -0.02 0.86 16 13 C -0.14 -3.31 5.37 -24.91 -0.13 -3.45 16 14 C 0.25 6.27 0.87 -89.64 -0.08 6.19 16 15 O -0.58 -15.20 13.16 -35.23 -0.46 -15.66 16 16 C -0.54 -14.34 8.27 -34.44 -0.28 -14.63 16 17 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 18 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 19 N -0.90 -23.93 10.75 55.43 0.60 -23.34 16 20 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.06 1.38 5.86 -2.29 -0.01 1.37 16 25 H 0.03 0.43 7.91 -51.93 -0.41 0.02 16 26 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 30 H 0.03 0.45 7.79 -51.93 -0.40 0.04 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.50 8.03 -52.49 -0.42 1.07 16 34 H 0.03 0.52 7.81 -51.93 -0.41 0.11 16 35 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.03 0.57 6.70 -51.93 -0.35 0.23 16 38 H 0.07 1.86 7.54 -51.93 -0.39 1.47 16 39 H 0.05 1.27 8.04 -51.93 -0.42 0.85 16 40 H 0.38 9.96 7.56 45.56 0.34 10.30 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.04 0.92 7.70 -51.93 -0.40 0.52 16 43 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -28.71 347.51 -9.75 -38.46 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.19 Total: 10.90 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.80 Total: -4.65 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -1.52 Total: -49.90 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.46 Total: -15.66 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.71 -9.75 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118201842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.476 kcal (2) G-P(sol) polarization free energy of solvation -28.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds