Wall clock time and date at job start Tue Mar 31 2020 07:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00671 * 2 1 4 4 C 1.39007 * 111.00036 * 123.95615 * 2 1 3 5 5 N 1.32427 * 119.70240 * 296.44964 * 4 2 1 6 6 C 1.31941 * 121.62575 * 179.97438 * 5 4 2 7 7 C 1.38065 * 120.85334 * 0.04570 * 6 5 4 8 8 C 1.38843 * 119.32736 * 359.97438 * 7 6 5 9 9 C 1.38341 * 118.50555 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.45016 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47043 * 254.73093 * 10 9 8 12 12 C 1.47439 * 111.00038 * 69.87461 * 11 10 9 13 13 C 1.54322 * 107.23353 * 123.25881 * 12 11 10 14 14 C 1.55142 * 103.01805 * 22.28122 * 13 12 11 15 15 O 1.42898 * 110.98734 * 82.47758 * 14 13 12 16 16 C 1.50693 * 110.99052 * 206.25377 * 14 13 12 17 17 H 1.08009 * 120.00009 * 118.54335 * 16 14 13 18 18 C 1.37877 * 120.00163 * 298.55075 * 16 14 13 19 19 N 1.31513 * 120.00068 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99943 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47352 * 59.99771 * 20 18 16 22 22 H 1.48501 * 109.47346 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47287 * 299.99823 * 20 18 16 24 24 C 1.47851 * 110.99822 * 190.72025 * 11 10 9 25 25 H 1.09002 * 109.46925 * 296.05061 * 1 2 3 26 26 H 1.09003 * 109.46691 * 56.04112 * 1 2 3 27 27 H 1.08995 * 109.47265 * 176.04370 * 1 2 3 28 28 H 1.08993 * 109.47926 * 185.81740 * 3 2 1 29 29 H 1.09000 * 109.46700 * 305.82278 * 3 2 1 30 30 H 1.09007 * 109.47027 * 65.81406 * 3 2 1 31 31 H 1.07995 * 119.57665 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.34213 * 180.25304 * 7 6 5 33 33 H 1.08000 * 120.74991 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47279 * 14.73426 * 10 9 8 35 35 H 1.09001 * 109.46948 * 134.72952 * 10 9 8 36 36 H 1.09004 * 109.88921 * 242.66231 * 12 11 10 37 37 H 1.09000 * 109.88666 * 3.84980 * 12 11 10 38 38 H 1.08993 * 110.70330 * 140.66400 * 13 12 11 39 39 H 1.09001 * 110.70419 * 263.72461 * 13 12 11 40 40 H 0.96703 * 114.00207 * 61.45802 * 15 14 13 41 41 H 0.97001 * 119.99946 * 179.97438 * 19 18 16 42 42 H 1.08992 * 110.37084 * 332.46211 * 24 11 10 43 43 H 1.08995 * 110.37217 * 94.80506 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9671 -0.7249 1.0764 5 7 1.7240 -0.3153 2.3121 6 6 2.1777 -0.9743 3.3612 7 6 2.9286 -2.1224 3.2058 8 6 3.2064 -2.5854 1.9266 9 6 2.7172 -1.8733 0.8461 10 6 2.9929 -2.3360 -0.5614 11 7 4.0103 -1.4694 -1.1712 12 6 5.3303 -1.6873 -0.5515 13 6 6.3078 -2.0732 -1.6816 14 6 5.6209 -1.4995 -2.9489 15 8 5.9078 -0.1079 -3.1010 16 6 6.0280 -2.2692 -4.1788 17 1 5.2828 -2.7927 -4.7595 18 6 7.3517 -2.3054 -4.5627 19 7 8.2591 -1.6678 -3.8558 20 14 7.8564 -3.2602 -6.0869 21 1 7.1540 -2.7071 -7.2727 22 1 9.3240 -3.1430 -6.2811 23 1 7.4926 -4.6901 -5.9184 24 6 4.1236 -1.7258 -2.6229 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0802 1.3442 -0.1042 29 1 1.5643 1.9261 -0.8333 30 1 1.7327 1.8615 0.9375 31 1 1.9592 -0.6108 4.3544 32 1 3.2924 -2.6576 4.0705 33 1 3.7919 -3.4807 1.7785 34 1 3.3555 -3.3637 -0.5416 35 1 2.0747 -2.2859 -1.1467 36 1 5.6677 -0.7715 -0.0660 37 1 5.2687 -2.4952 0.1776 38 1 7.2804 -1.6066 -1.5257 39 1 6.4081 -3.1563 -1.7512 40 1 6.8479 0.0902 -3.2108 41 1 9.1904 -1.6935 -4.1257 42 1 3.8367 -2.7524 -2.8503 43 1 3.5034 -1.0249 -3.1815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118201842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:50 Heat of formation + Delta-G solvation = -8.247225 kcal Electronic energy + Delta-G solvation = -24244.929485 eV Core-core repulsion = 20903.708649 eV Total energy + Delta-G solvation = -3341.220836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58588 -39.89735 -37.67341 -36.67243 -34.15574 -33.89619 -32.02987 -30.54339 -29.81946 -28.46462 -27.29237 -25.92456 -25.69642 -23.15933 -22.50888 -21.38438 -21.30049 -18.98111 -18.04389 -17.73560 -16.87916 -16.79342 -16.42465 -16.35908 -15.89975 -15.70158 -15.33293 -14.89281 -14.41532 -14.34828 -14.09905 -13.93700 -13.78579 -13.46724 -13.17058 -13.10699 -13.05426 -12.87516 -12.81448 -12.60740 -12.56875 -12.26519 -12.20585 -12.05220 -11.63541 -11.06156 -10.69639 -10.60813 -10.56146 -10.04405 -9.70506 -9.43950 -9.00981 -8.18824 -6.34734 0.16195 0.34319 1.42328 1.43869 1.51153 2.39822 2.74905 2.85404 3.05824 3.35709 3.57666 3.93670 3.96335 4.09908 4.11168 4.17044 4.25599 4.33229 4.47274 4.47858 4.50747 4.58519 4.64839 4.69686 4.72301 4.80495 4.93789 4.95689 4.96921 5.05647 5.12653 5.22800 5.30264 5.33995 5.51447 5.57955 5.62546 5.83391 5.96374 6.03606 6.28910 6.36785 6.44752 6.71307 7.01782 7.36985 7.49226 8.86047 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.004229 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.851595 B = 6619.887484 C = 7042.756817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.492 5.492 3 C 0.048 3.952 4 C 0.294 3.706 5 N -0.536 5.536 6 C 0.095 3.905 7 C -0.168 4.168 8 C -0.076 4.076 9 C -0.109 4.109 10 C 0.110 3.890 11 N -0.510 5.510 12 C 0.058 3.942 13 C -0.133 4.133 14 C 0.236 3.764 15 O -0.588 6.588 16 C -0.562 4.562 17 H 0.054 0.946 18 C 0.032 3.968 19 N -0.911 5.911 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.074 3.926 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.149 0.851 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.370 0.630 41 H 0.268 0.732 42 H 0.049 0.951 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.263 -1.571 13.243 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.215 5.215 3 C -0.099 4.099 4 C 0.066 3.934 5 N -0.249 5.249 6 C -0.063 4.063 7 C -0.187 4.187 8 C -0.102 4.102 9 C -0.113 4.113 10 C -0.018 4.018 11 N -0.233 5.233 12 C -0.069 4.069 13 C -0.173 4.173 14 C 0.196 3.804 15 O -0.395 6.395 16 C -0.600 4.600 17 H 0.073 0.927 18 C -0.169 4.169 19 N -0.551 5.551 20 Si 0.783 3.217 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.053 4.053 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.197 0.803 32 H 0.186 0.814 33 H 0.167 0.833 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.218 0.782 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.255 -0.430 13.070 17.922 hybrid contribution 1.725 -1.514 -0.574 2.366 sum -10.529 -1.944 12.496 16.456 Atomic orbital electron populations 1.22381 0.84984 1.02468 1.01476 1.60066 1.09190 1.15180 1.37078 1.22165 1.00103 0.86948 1.00720 1.19761 0.94154 0.92153 0.87318 1.67718 1.23146 1.33881 1.00146 1.23035 0.93604 0.92043 0.97606 1.22410 0.99881 0.98096 0.98362 1.21814 0.96670 0.99635 0.92110 1.20547 0.98513 0.95833 0.96358 1.20896 0.96342 0.93167 0.91425 1.63482 1.05062 1.52276 1.02505 1.22663 0.89259 0.98868 0.96158 1.23039 0.98568 0.99188 0.96464 1.19762 0.90218 0.79002 0.91386 1.86150 1.30251 1.27204 1.95854 1.21815 0.93637 1.32545 1.12004 0.92733 1.25668 0.96314 0.95650 0.99232 1.69828 1.02095 1.43218 1.39925 0.85628 0.77007 0.79194 0.79863 1.20046 1.20699 1.19609 1.22753 0.96437 0.98281 0.87873 0.94863 0.89589 0.91592 0.93189 0.89995 0.94892 0.80328 0.81437 0.83283 0.94029 0.89858 0.93276 0.92466 0.92846 0.93632 0.78244 0.92305 0.93270 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.46 127.69 1.21 2.01 16 2 N -0.49 -14.45 4.25 -751.81 -3.20 -17.65 16 3 C 0.05 1.39 9.48 127.69 1.21 2.60 16 4 C 0.29 8.72 5.33 133.04 0.71 9.43 16 5 N -0.54 -14.77 9.50 -193.27 -1.84 -16.61 16 6 C 0.10 2.00 11.17 84.64 0.95 2.95 16 7 C -0.17 -3.12 10.10 22.37 0.23 -2.90 16 8 C -0.08 -1.73 9.11 22.44 0.20 -1.52 16 9 C -0.11 -3.10 4.90 -19.63 -0.10 -3.20 16 10 C 0.11 3.46 4.27 85.56 0.37 3.83 16 11 N -0.51 -19.56 5.15 -890.10 -4.58 -24.14 16 12 C 0.06 2.29 6.41 86.65 0.56 2.85 16 13 C -0.13 -6.22 5.37 31.78 0.17 -6.04 16 14 C 0.24 11.90 0.87 -10.16 -0.01 11.89 16 15 O -0.59 -31.73 13.16 -148.98 -1.96 -33.69 16 16 C -0.56 -30.39 8.27 25.60 0.21 -30.18 16 17 H 0.05 2.92 7.79 -2.91 -0.02 2.90 16 18 C 0.03 1.70 5.29 84.65 0.45 2.15 16 19 N -0.91 -49.19 10.75 21.45 0.23 -48.96 16 20 Si 0.96 42.21 29.54 68.60 2.03 44.23 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.07 3.24 5.86 86.77 0.51 3.75 16 25 H 0.03 0.78 7.91 -2.39 -0.02 0.77 16 26 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.03 0.92 7.79 -2.38 -0.02 0.90 16 31 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.15 2.85 8.03 -2.91 -0.02 2.82 16 34 H 0.04 1.23 7.81 -2.39 -0.02 1.22 16 35 H 0.08 2.62 7.91 -2.39 -0.02 2.61 16 36 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.06 1.94 6.70 -2.39 -0.02 1.93 16 38 H 0.05 2.69 7.54 -2.39 -0.02 2.67 16 39 H 0.04 2.15 8.04 -2.39 -0.02 2.13 16 40 H 0.37 20.28 7.56 -74.06 -0.56 19.72 16 41 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.05 2.07 7.70 -2.39 -0.02 2.05 16 43 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -61.80 347.51 -2.22 -64.02 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.43 Total: 35.18 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 6.66 Total: -2.40 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -9.38 Total: -107.35 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.96 Total: -33.69 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -61.80 -2.22 -64.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118201842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.775 kcal (2) G-P(sol) polarization free energy of solvation -61.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds