Wall clock time and date at job start Tue Mar 31 2020 07:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46901 * 110.99435 * 2 1 4 4 C 1.39007 * 110.99582 * 123.94936 * 2 1 3 5 5 N 1.32423 * 119.70692 * 274.25784 * 4 2 1 6 6 C 1.31939 * 121.62295 * 180.29297 * 5 4 2 7 7 C 1.38063 * 120.85557 * 359.68690 * 6 5 4 8 8 C 1.38835 * 119.32921 * 0.02562 * 7 6 5 9 9 C 1.38349 * 118.50493 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.45156 * 179.97438 * 9 8 7 11 11 N 1.46894 * 109.47402 * 265.65503 * 10 9 8 12 12 C 1.47904 * 110.99668 * 75.17040 * 11 10 9 13 13 C 1.54000 * 107.05693 * 214.15471 * 12 11 10 14 14 C 1.54586 * 105.13976 * 1.23049 * 13 12 11 15 15 O 1.42905 * 110.72307 * 263.59720 * 14 13 12 16 16 C 1.50697 * 110.72925 * 140.31559 * 14 13 12 17 17 H 1.07993 * 120.00211 * 241.45740 * 16 14 13 18 18 C 1.37880 * 119.99902 * 61.44222 * 16 14 13 19 19 N 1.31516 * 119.99908 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00012 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47072 * 90.00655 * 20 18 16 22 22 H 1.48500 * 109.47215 * 210.00564 * 20 18 16 23 23 H 1.48507 * 109.47023 * 330.00314 * 20 18 16 24 24 C 1.48533 * 111.00209 * 317.77800 * 11 10 9 25 25 H 1.08994 * 109.47439 * 296.04636 * 1 2 3 26 26 H 1.08998 * 109.47036 * 56.05003 * 1 2 3 27 27 H 1.09004 * 109.46252 * 176.04756 * 1 2 3 28 28 H 1.09002 * 109.46784 * 178.79073 * 3 2 1 29 29 H 1.09002 * 109.46989 * 298.78246 * 3 2 1 30 30 H 1.08999 * 109.47446 * 58.78666 * 3 2 1 31 31 H 1.08004 * 119.57255 * 179.70815 * 6 5 4 32 32 H 1.08008 * 120.33716 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.74967 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47030 * 25.66266 * 10 9 8 35 35 H 1.08999 * 109.46879 * 145.65616 * 10 9 8 36 36 H 1.08998 * 109.91901 * 333.51073 * 12 11 10 37 37 H 1.09006 * 109.91877 * 94.80645 * 12 11 10 38 38 H 1.09002 * 110.30068 * 120.14372 * 13 12 11 39 39 H 1.09000 * 110.30904 * 242.20871 * 13 12 11 40 40 H 0.96700 * 113.99813 * 298.54520 * 15 14 13 41 41 H 0.97004 * 119.99612 * 179.97438 * 19 18 16 42 42 H 1.08992 * 110.66730 * 278.15672 * 24 11 10 43 43 H 1.09007 * 110.66900 * 41.28285 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9671 -0.7248 1.0766 5 7 2.1225 -0.1325 2.2507 6 6 2.5973 -0.7827 3.2960 7 6 2.9453 -2.1155 3.2027 8 6 2.7922 -2.7751 1.9907 9 6 2.2930 -2.0670 0.9121 10 6 2.1095 -2.7393 -0.4240 11 7 3.2976 -2.5077 -1.2561 12 6 4.4289 -3.3501 -0.8110 13 6 5.7159 -2.5361 -1.0403 14 6 5.2398 -1.1797 -1.6088 15 8 5.3132 -1.1757 -3.0359 16 6 6.0456 -0.0460 -1.0288 17 1 5.5572 0.7209 -0.4461 18 6 7.4066 0.0120 -1.2419 19 7 8.0015 -0.9218 -1.9518 20 14 8.4056 1.4170 -0.5225 21 1 8.8846 1.0409 0.8319 22 1 9.5708 1.6959 -1.3998 23 1 7.5556 2.6310 -0.4276 24 6 3.7665 -1.1035 -1.1354 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3632 -1.0253 -0.0708 28 1 3.0848 1.3425 0.0217 29 1 1.6636 1.8880 -0.9007 30 1 1.6284 1.9016 0.8789 31 1 2.7149 -0.2657 4.2370 32 1 3.3328 -2.6397 4.0639 33 1 3.0568 -3.8175 1.8921 34 1 1.9728 -3.8106 -0.2759 35 1 1.2317 -2.3264 -0.9210 36 1 4.3223 -3.5858 0.2478 37 1 4.4611 -4.2686 -1.3972 38 1 6.2424 -2.3875 -0.0976 39 1 6.3614 -3.0431 -1.7576 40 1 6.2068 -1.2993 -3.3841 41 1 8.9589 -0.8807 -2.1020 42 1 3.1872 -0.4473 -1.7848 43 1 3.7121 -0.7673 -0.0999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118201843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:55 Heat of formation + Delta-G solvation = 22.172852 kcal Electronic energy + Delta-G solvation = -25238.955527 eV Core-core repulsion = 21899.053804 eV Total energy + Delta-G solvation = -3339.901722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80861 -38.04060 -36.70131 -34.97837 -32.38877 -32.03303 -30.84979 -29.01367 -28.05427 -27.39878 -25.73561 -24.74156 -24.10208 -21.93800 -21.39264 -19.82761 -19.27878 -17.05135 -16.97456 -16.56905 -15.54902 -15.36070 -14.88902 -14.75481 -14.34580 -14.22097 -13.84991 -13.57884 -13.23012 -13.11768 -12.88717 -12.37911 -12.19726 -11.97550 -11.90838 -11.74329 -11.48755 -11.27701 -11.15422 -10.90307 -10.76081 -10.54461 -10.37935 -10.27060 -9.74864 -9.56524 -9.49501 -9.04832 -8.88075 -8.51684 -8.12731 -7.99833 -7.57358 -6.13946 -4.21151 1.22498 1.42513 3.24245 3.31615 3.35863 3.80635 3.88788 4.34581 4.59388 4.91372 4.93856 5.11803 5.15197 5.17837 5.24509 5.44610 5.45279 5.59548 5.71913 5.78433 5.82367 5.85581 5.87922 6.03558 6.13196 6.19302 6.22934 6.27402 6.34791 6.43833 6.63482 6.66769 6.80779 6.93312 7.08266 7.20574 7.41954 7.51645 7.60752 7.68706 7.84284 7.91106 8.09857 8.30117 8.81110 9.47305 9.65852 10.92941 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.006550 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.170618 B = 4273.805903 C = 4568.624068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.482 5.482 3 C 0.029 3.971 4 C 0.313 3.687 5 N -0.516 5.516 6 C 0.107 3.893 7 C -0.183 4.183 8 C -0.064 4.064 9 C -0.141 4.141 10 C 0.096 3.904 11 N -0.498 5.498 12 C 0.028 3.972 13 C -0.128 4.128 14 C 0.251 3.749 15 O -0.579 6.579 16 C -0.530 4.530 17 H 0.056 0.944 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.066 3.934 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.374 0.626 41 H 0.265 0.735 42 H 0.078 0.922 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 -2.877 7.687 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.203 5.203 3 C -0.118 4.118 4 C 0.083 3.917 5 N -0.228 5.228 6 C -0.051 4.051 7 C -0.203 4.203 8 C -0.090 4.090 9 C -0.146 4.146 10 C -0.033 4.033 11 N -0.219 5.219 12 C -0.100 4.100 13 C -0.167 4.167 14 C 0.211 3.789 15 O -0.387 6.387 16 C -0.569 4.569 17 H 0.074 0.926 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.061 4.061 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.223 0.777 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.471 -2.307 6.737 14.361 hybrid contribution 1.690 0.303 2.051 2.675 sum -10.781 -2.004 8.789 14.053 Atomic orbital electron populations 1.22399 0.85564 1.02467 1.01142 1.60120 1.08217 1.15784 1.36186 1.22373 1.01862 0.86725 1.00834 1.19618 0.94337 0.90543 0.87214 1.67672 1.15229 1.40261 0.99639 1.22411 0.94592 0.91653 0.96479 1.22018 1.03217 0.96361 0.98753 1.21461 0.95428 1.00181 0.91978 1.21303 1.00470 0.94639 0.98214 1.21256 0.96761 0.98219 0.87067 1.65158 1.03434 1.06766 1.46533 1.23015 0.92828 0.97294 0.96856 1.22896 0.94251 0.98213 1.01305 1.19440 0.89594 0.90679 0.79192 1.86163 1.34241 1.96073 1.22217 1.21568 0.92581 1.09694 1.33029 0.92570 1.24979 0.97700 0.95854 0.94579 1.69744 1.10716 1.33341 1.39636 0.86567 0.79696 0.82709 0.78878 1.20740 1.21028 1.19782 1.23324 0.95922 0.87776 0.99033 0.94978 0.90407 0.91319 0.90401 0.90980 0.94135 0.83246 0.85085 0.84960 0.91343 0.89543 0.95297 0.92011 0.92579 0.91719 0.77700 0.92512 0.90382 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.28 60.07 0.56 0.94 16 2 N -0.48 -7.54 2.45 -188.97 -0.46 -8.00 16 3 C 0.03 0.46 8.49 60.07 0.51 0.97 16 4 C 0.31 5.18 3.73 -155.01 -0.58 4.60 16 5 N -0.52 -8.45 9.28 -12.44 -0.12 -8.57 16 6 C 0.11 1.50 11.17 -17.57 -0.20 1.30 16 7 C -0.18 -2.39 10.10 -39.42 -0.40 -2.79 16 8 C -0.06 -0.91 8.60 -39.32 -0.34 -1.25 16 9 C -0.14 -2.25 3.96 -104.26 -0.41 -2.66 16 10 C 0.10 1.55 5.48 -4.98 -0.03 1.52 16 11 N -0.50 -9.94 5.54 -231.89 -1.28 -11.22 16 12 C 0.03 0.56 6.44 -2.75 -0.02 0.54 16 13 C -0.13 -3.05 5.26 -25.38 -0.13 -3.19 16 14 C 0.25 6.43 0.95 -89.92 -0.09 6.35 16 15 O -0.58 -15.72 13.10 -35.23 -0.46 -16.18 16 16 C -0.53 -14.58 8.14 -34.44 -0.28 -14.86 16 17 H 0.06 1.56 7.78 -52.49 -0.41 1.16 16 18 C 0.07 1.92 5.28 -17.82 -0.09 1.83 16 19 N -0.89 -24.44 11.02 55.43 0.61 -23.83 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.07 1.49 3.63 -1.90 -0.01 1.48 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.78 7.57 -51.93 -0.39 0.39 16 28 H 0.08 1.46 7.33 -51.93 -0.38 1.07 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.61 7.78 -51.93 -0.40 0.20 16 31 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.13 1.63 7.47 -52.49 -0.39 1.23 16 34 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 35 H 0.09 1.35 6.84 -51.93 -0.36 0.99 16 36 H 0.03 0.52 5.63 -51.93 -0.29 0.23 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.41 7.84 -51.93 -0.41 1.01 16 39 H 0.06 1.62 7.99 -51.93 -0.41 1.20 16 40 H 0.37 10.21 7.48 45.56 0.34 10.55 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.08 1.84 7.50 -51.93 -0.39 1.45 16 43 H 0.05 1.14 3.89 -51.93 -0.20 0.94 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -30.01 332.80 -9.00 -39.01 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.78 Total: 12.81 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.50 Total: -5.22 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -1.25 Total: -51.63 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.46 Total: -16.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.01 -9.00 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118201843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.187 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds