Wall clock time and date at job start Tue Mar 31 2020 07:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46901 * 110.99435 * 2 1 4 4 C 1.39007 * 110.99582 * 123.94936 * 2 1 3 5 5 N 1.32423 * 119.70692 * 274.25784 * 4 2 1 6 6 C 1.31939 * 121.62295 * 180.29297 * 5 4 2 7 7 C 1.38063 * 120.85557 * 359.68690 * 6 5 4 8 8 C 1.38835 * 119.32921 * 0.02562 * 7 6 5 9 9 C 1.38349 * 118.50493 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.45156 * 179.97438 * 9 8 7 11 11 N 1.46894 * 109.47402 * 265.65503 * 10 9 8 12 12 C 1.47904 * 110.99668 * 75.17040 * 11 10 9 13 13 C 1.54000 * 107.05693 * 214.15471 * 12 11 10 14 14 C 1.54586 * 105.13976 * 1.23049 * 13 12 11 15 15 O 1.42905 * 110.72307 * 263.59720 * 14 13 12 16 16 C 1.50697 * 110.72925 * 140.31559 * 14 13 12 17 17 H 1.07993 * 120.00211 * 241.45740 * 16 14 13 18 18 C 1.37880 * 119.99902 * 61.44222 * 16 14 13 19 19 N 1.31516 * 119.99908 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00012 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47072 * 90.00655 * 20 18 16 22 22 H 1.48500 * 109.47215 * 210.00564 * 20 18 16 23 23 H 1.48507 * 109.47023 * 330.00314 * 20 18 16 24 24 C 1.48533 * 111.00209 * 317.77800 * 11 10 9 25 25 H 1.08994 * 109.47439 * 296.04636 * 1 2 3 26 26 H 1.08998 * 109.47036 * 56.05003 * 1 2 3 27 27 H 1.09004 * 109.46252 * 176.04756 * 1 2 3 28 28 H 1.09002 * 109.46784 * 178.79073 * 3 2 1 29 29 H 1.09002 * 109.46989 * 298.78246 * 3 2 1 30 30 H 1.08999 * 109.47446 * 58.78666 * 3 2 1 31 31 H 1.08004 * 119.57255 * 179.70815 * 6 5 4 32 32 H 1.08008 * 120.33716 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.74967 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47030 * 25.66266 * 10 9 8 35 35 H 1.08999 * 109.46879 * 145.65616 * 10 9 8 36 36 H 1.08998 * 109.91901 * 333.51073 * 12 11 10 37 37 H 1.09006 * 109.91877 * 94.80645 * 12 11 10 38 38 H 1.09002 * 110.30068 * 120.14372 * 13 12 11 39 39 H 1.09000 * 110.30904 * 242.20871 * 13 12 11 40 40 H 0.96700 * 113.99813 * 298.54520 * 15 14 13 41 41 H 0.97004 * 119.99612 * 179.97438 * 19 18 16 42 42 H 1.08992 * 110.66730 * 278.15672 * 24 11 10 43 43 H 1.09007 * 110.66900 * 41.28285 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9671 -0.7248 1.0766 5 7 2.1225 -0.1325 2.2507 6 6 2.5973 -0.7827 3.2960 7 6 2.9453 -2.1155 3.2027 8 6 2.7922 -2.7751 1.9907 9 6 2.2930 -2.0670 0.9121 10 6 2.1095 -2.7393 -0.4240 11 7 3.2976 -2.5077 -1.2561 12 6 4.4289 -3.3501 -0.8110 13 6 5.7159 -2.5361 -1.0403 14 6 5.2398 -1.1797 -1.6088 15 8 5.3132 -1.1757 -3.0359 16 6 6.0456 -0.0460 -1.0288 17 1 5.5572 0.7209 -0.4461 18 6 7.4066 0.0120 -1.2419 19 7 8.0015 -0.9218 -1.9518 20 14 8.4056 1.4170 -0.5225 21 1 8.8846 1.0409 0.8319 22 1 9.5708 1.6959 -1.3998 23 1 7.5556 2.6310 -0.4276 24 6 3.7665 -1.1035 -1.1354 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3632 -1.0253 -0.0708 28 1 3.0848 1.3425 0.0217 29 1 1.6636 1.8880 -0.9007 30 1 1.6284 1.9016 0.8789 31 1 2.7149 -0.2657 4.2370 32 1 3.3328 -2.6397 4.0639 33 1 3.0568 -3.8175 1.8921 34 1 1.9728 -3.8106 -0.2759 35 1 1.2317 -2.3264 -0.9210 36 1 4.3223 -3.5858 0.2478 37 1 4.4611 -4.2686 -1.3972 38 1 6.2424 -2.3875 -0.0976 39 1 6.3614 -3.0431 -1.7576 40 1 6.2068 -1.2993 -3.3841 41 1 8.9589 -0.8807 -2.1020 42 1 3.1872 -0.4473 -1.7848 43 1 3.7121 -0.7673 -0.0999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118201843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:54 Heat of formation + Delta-G solvation = 0.402084 kcal Electronic energy + Delta-G solvation = -25239.899578 eV Core-core repulsion = 21899.053804 eV Total energy + Delta-G solvation = -3340.845774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99804 -39.70752 -37.81352 -36.76421 -34.16135 -33.76851 -32.09722 -30.53134 -29.78347 -28.60953 -27.36398 -25.90709 -25.75285 -23.27304 -22.56337 -21.47718 -21.06378 -19.01862 -18.15397 -17.76716 -17.00505 -16.94986 -16.49960 -16.35351 -15.83932 -15.64312 -15.20942 -14.92817 -14.76745 -14.47909 -14.17793 -13.90325 -13.54139 -13.51919 -13.25635 -13.16200 -13.06174 -12.87980 -12.69543 -12.53450 -12.47589 -12.34041 -12.12287 -12.11613 -11.58370 -11.00400 -10.74791 -10.62830 -10.56990 -10.11209 -10.01987 -9.28044 -9.11843 -8.21297 -6.35981 0.12465 0.32491 1.34265 1.37006 1.46533 2.35736 2.72144 2.76426 3.03310 3.35090 3.57757 3.88806 3.99583 4.05162 4.10770 4.17553 4.23632 4.31831 4.39925 4.46447 4.54223 4.57134 4.61100 4.67601 4.72066 4.87279 4.89193 4.97921 5.00386 5.05387 5.15968 5.23835 5.27039 5.33859 5.53425 5.58087 5.60815 5.79501 5.82921 5.99076 6.26043 6.28063 6.38692 6.69346 6.98932 7.35221 7.52313 8.83925 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.006550 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.170618 B = 4273.805903 C = 4568.624068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.495 5.495 3 C 0.039 3.961 4 C 0.295 3.705 5 N -0.541 5.541 6 C 0.095 3.905 7 C -0.179 4.179 8 C -0.069 4.069 9 C -0.160 4.160 10 C 0.099 3.901 11 N -0.507 5.507 12 C 0.037 3.963 13 C -0.119 4.119 14 C 0.233 3.767 15 O -0.589 6.589 16 C -0.553 4.553 17 H 0.042 0.958 18 C 0.032 3.968 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.275 1.275 22 H -0.277 1.277 23 H -0.275 1.275 24 C 0.090 3.910 25 H 0.031 0.969 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.369 0.631 41 H 0.268 0.732 42 H 0.060 0.940 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 -3.783 9.100 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.217 5.217 3 C -0.108 4.108 4 C 0.066 3.934 5 N -0.253 5.253 6 C -0.062 4.062 7 C -0.198 4.198 8 C -0.096 4.096 9 C -0.165 4.165 10 C -0.029 4.029 11 N -0.229 5.229 12 C -0.091 4.091 13 C -0.158 4.158 14 C 0.193 3.807 15 O -0.396 6.396 16 C -0.591 4.591 17 H 0.060 0.940 18 C -0.169 4.169 19 N -0.549 5.549 20 Si 0.776 3.224 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.200 1.200 24 C -0.038 4.038 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.193 0.807 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.216 0.784 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.149 -3.224 8.153 15.804 hybrid contribution 1.877 0.586 1.661 2.575 sum -11.272 -2.637 9.814 15.176 Atomic orbital electron populations 1.22451 0.83665 1.03361 1.01742 1.60136 1.09948 1.15204 1.36381 1.22210 0.99423 0.87563 1.01615 1.19824 0.95007 0.91051 0.87536 1.67678 1.16288 1.41133 1.00251 1.22993 0.93806 0.92545 0.96878 1.22399 1.01933 0.96002 0.99501 1.21820 0.94593 1.01253 0.91887 1.21325 1.01848 0.94680 0.98665 1.21288 0.94850 0.99925 0.86822 1.65077 1.04421 1.05014 1.48400 1.22934 0.90643 0.96929 0.98590 1.22673 0.95803 0.97887 0.99403 1.19729 0.91659 0.91080 0.78272 1.86158 1.33819 1.96188 1.23457 1.21755 0.93420 1.10333 1.33639 0.94009 1.25621 0.98449 0.97935 0.94856 1.69821 1.10994 1.34226 1.39815 0.85686 0.78340 0.79924 0.78458 1.20119 1.20182 1.20020 1.22942 0.93506 0.89187 0.98131 0.95056 0.88918 0.90401 0.94134 0.89656 0.93839 0.80695 0.81684 0.82745 0.88692 0.89230 0.93073 0.90445 0.94621 0.93593 0.78351 0.92257 0.92164 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.28 127.69 1.19 1.98 16 2 N -0.50 -15.36 2.45 -751.77 -1.84 -17.20 16 3 C 0.04 1.27 8.49 127.69 1.08 2.35 16 4 C 0.30 9.56 3.73 133.05 0.50 10.06 16 5 N -0.54 -17.29 9.28 -193.26 -1.79 -19.09 16 6 C 0.10 2.50 11.17 84.64 0.95 3.44 16 7 C -0.18 -4.12 10.10 22.37 0.23 -3.90 16 8 C -0.07 -1.77 8.60 22.44 0.19 -1.57 16 9 C -0.16 -4.83 3.96 -19.63 -0.08 -4.91 16 10 C 0.10 2.99 5.48 85.56 0.47 3.46 16 11 N -0.51 -19.66 5.54 -887.57 -4.91 -24.58 16 12 C 0.04 1.41 6.44 86.45 0.56 1.96 16 13 C -0.12 -5.71 5.26 31.47 0.17 -5.54 16 14 C 0.23 12.12 0.95 -10.34 -0.01 12.11 16 15 O -0.59 -32.72 13.10 -148.98 -1.95 -34.67 16 16 C -0.55 -31.15 8.14 25.60 0.21 -30.94 16 17 H 0.04 2.41 7.78 -2.91 -0.02 2.39 16 18 C 0.03 1.75 5.28 84.66 0.45 2.20 16 19 N -0.91 -50.19 11.02 21.45 0.24 -49.95 16 20 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 C 0.09 4.07 3.63 86.65 0.31 4.38 16 25 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.66 7.57 -2.39 -0.02 1.65 16 28 H 0.04 1.58 7.33 -2.39 -0.02 1.56 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.32 7.78 -2.39 -0.02 1.31 16 31 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 32 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.15 3.18 7.47 -2.91 -0.02 3.16 16 34 H 0.09 2.35 7.94 -2.39 -0.02 2.33 16 35 H 0.09 2.63 6.84 -2.39 -0.02 2.61 16 36 H 0.05 1.72 5.63 -2.39 -0.01 1.71 16 37 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.03 1.81 7.84 -2.39 -0.02 1.79 16 39 H 0.05 2.33 7.99 -2.39 -0.02 2.31 16 40 H 0.37 20.71 7.48 -74.06 -0.55 20.16 16 41 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.06 2.90 7.50 -2.39 -0.02 2.88 16 43 H 0.05 2.19 3.89 -2.38 -0.01 2.18 16 Total: -1.00 -65.32 332.80 -1.58 -66.90 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.46 Total: 37.72 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 6.21 Total: -4.91 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -8.32 Total: -110.82 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.95 Total: -34.67 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.32 -1.58 -66.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118201843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.301 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds