Wall clock time and date at job start Tue Mar 31 2020 07:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36884 * 126.40307 * 2 1 4 4 C 1.34662 * 106.82136 * 180.25225 * 3 2 1 5 5 N 1.34131 * 108.01965 * 359.74695 * 4 3 2 6 6 C 1.30496 * 109.25655 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.65172 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47491 * 90.01812 * 7 6 5 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 11 9 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46927 * 59.99717 * 17 15 13 19 19 H 1.48496 * 109.47287 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47040 * 299.99940 * 17 15 13 21 21 C 1.46506 * 120.00264 * 0.28128 * 11 9 8 22 22 C 1.52998 * 109.47320 * 89.99349 * 21 11 9 23 23 C 1.52997 * 117.50231 * 243.62602 * 22 21 11 24 24 C 1.52998 * 117.50058 * 174.99994 * 22 21 11 25 25 H 1.08996 * 109.47105 * 270.18881 * 1 2 3 26 26 H 1.09006 * 109.46986 * 30.18430 * 1 2 3 27 27 H 1.08999 * 109.47076 * 150.18318 * 1 2 3 28 28 H 1.08001 * 126.58857 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.99342 * 179.71763 * 4 3 2 30 30 H 1.09004 * 109.46801 * 330.01851 * 7 6 5 31 31 H 1.09000 * 109.47461 * 210.02383 * 7 6 5 32 32 H 1.09004 * 109.47066 * 60.00201 * 8 7 6 33 33 H 1.08994 * 109.47405 * 300.00031 * 8 7 6 34 34 H 1.09001 * 109.47567 * 210.00057 * 12 11 9 35 35 H 1.09005 * 109.47076 * 330.00563 * 12 11 9 36 36 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.46996 * 209.99677 * 21 11 9 38 38 H 1.09001 * 109.46578 * 329.99540 * 21 11 9 39 39 H 1.09001 * 115.54721 * 29.33740 * 22 21 11 40 40 H 1.09000 * 117.49450 * 0.02562 * 23 22 21 41 41 H 1.08994 * 117.49954 * 145.01950 * 23 22 21 42 42 H 1.08996 * 117.50282 * 214.98430 * 24 22 21 43 43 H 1.09000 * 117.49560 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6504 -0.0057 5 7 3.5095 -0.6904 -0.0034 6 6 2.2663 -1.0870 0.0040 7 6 1.8017 -2.5206 0.0093 8 6 1.6517 -3.0029 1.4535 9 6 1.1865 -4.4363 1.4587 10 8 0.9944 -5.0153 0.4105 11 7 0.9899 -5.0767 2.6282 12 6 0.5435 -6.4720 2.6333 13 6 1.7436 -7.3834 2.6255 14 1 2.7393 -6.9651 2.6179 15 6 1.5705 -8.7513 2.6279 16 7 0.3580 -9.2607 2.6366 17 14 3.0582 -9.8810 2.6190 18 1 3.8839 -9.6216 3.8257 19 1 2.6057 -11.2953 2.6240 20 1 3.8675 -9.6240 1.4008 21 6 1.2225 -4.3775 3.8944 22 6 -0.0704 -3.6944 4.3448 23 6 -0.0694 -2.1669 4.4313 24 6 -0.0666 -3.0056 5.7110 25 1 -0.3633 0.0034 1.0276 26 1 -0.3633 0.8884 -0.5167 27 1 -0.3633 -0.8916 -0.5110 28 1 1.9614 2.1345 -0.0004 29 1 4.4369 1.2610 -0.0115 30 1 2.5338 -3.1416 -0.5070 31 1 0.8406 -2.5930 -0.4996 32 1 0.9197 -2.3818 1.9698 33 1 2.6129 -2.9306 1.9624 34 1 -0.0500 -6.6604 3.5279 35 1 -0.0632 -6.6626 1.7479 36 1 0.2363 -10.2229 2.6387 37 1 1.5379 -5.0942 4.6526 38 1 2.0011 -3.6271 3.7574 39 1 -0.9935 -4.1804 4.0288 40 1 0.8523 -1.6485 4.1668 41 1 -0.9919 -1.6476 4.1719 42 1 -0.9872 -3.0379 6.2935 43 1 0.8571 -3.0386 6.2886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123556224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:47 Heat of formation + Delta-G solvation = 45.570244 kcal Electronic energy + Delta-G solvation = -23417.268969 eV Core-core repulsion = 20078.381834 eV Total energy + Delta-G solvation = -3338.887135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12191 -39.24665 -37.21934 -34.53630 -34.10327 -33.41033 -32.46233 -29.18510 -27.78103 -27.12594 -26.20060 -24.50883 -22.34163 -22.27787 -21.41800 -20.68248 -19.67486 -18.35100 -17.25398 -16.47717 -16.40883 -15.82901 -15.36316 -15.25463 -14.83307 -14.55473 -14.21510 -13.94550 -13.68104 -13.22600 -13.07118 -12.85112 -12.83274 -12.45113 -12.28817 -11.98747 -11.73043 -11.48657 -11.39912 -11.17388 -10.97280 -10.85495 -10.57458 -10.34402 -10.08267 -9.96678 -9.84357 -9.66796 -9.61167 -8.92624 -8.40992 -8.38117 -7.67181 -6.02138 -4.06577 1.96909 2.69850 3.12039 3.34728 3.38752 3.39575 3.45671 3.77993 3.99330 4.43569 4.50325 4.54220 4.71822 4.86706 4.88548 4.99999 5.04255 5.12599 5.19349 5.24250 5.31919 5.35094 5.46452 5.49067 5.60039 5.64060 5.73121 5.84617 5.93933 6.04643 6.08821 6.14604 6.21305 6.26100 6.44379 6.71366 7.07424 7.10967 7.45271 7.55920 7.94427 8.10977 8.25828 8.42661 8.92067 9.10222 9.58601 11.05955 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.004231 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.683421 B = 6616.477113 C = 7605.583475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.459 5.459 3 C -0.067 4.067 4 C -0.029 4.029 5 N -0.490 5.490 6 C 0.218 3.782 7 C -0.020 4.020 8 C -0.134 4.134 9 C 0.509 3.491 10 O -0.542 6.542 11 N -0.594 5.594 12 C 0.246 3.754 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.141 3.859 22 C -0.163 4.163 23 C -0.187 4.187 24 C -0.176 4.176 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 21.266 0.994 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.142 5.142 3 C -0.200 4.200 4 C -0.178 4.178 5 N -0.208 5.208 6 C -0.045 4.045 7 C -0.059 4.059 8 C -0.175 4.175 9 C 0.296 3.704 10 O -0.420 6.420 11 N -0.324 5.324 12 C 0.127 3.873 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.017 3.983 22 C -0.182 4.182 23 C -0.224 4.224 24 C -0.213 4.213 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.189 0.811 29 H 0.185 0.815 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.646 20.243 0.428 20.314 hybrid contribution 0.012 0.105 0.202 0.228 sum -1.634 20.348 0.630 20.424 Atomic orbital electron populations 1.22081 0.76750 1.04754 1.03809 1.45338 1.07562 1.06670 1.54605 1.22637 0.91467 0.92423 1.13474 1.22298 0.96327 0.91341 1.07789 1.70301 1.18594 1.11827 1.20112 1.23427 0.85650 0.90988 1.04417 1.19763 1.02993 0.85844 0.97325 1.21666 1.03264 0.95257 0.97293 1.20204 0.78366 0.87644 0.84209 1.90675 1.51888 1.68307 1.31099 1.48172 1.65742 1.14595 1.03939 1.19275 0.95538 0.74125 0.98327 1.21409 0.93033 0.91020 1.51047 0.92469 1.24922 0.96007 0.98029 0.95056 1.69921 1.20635 1.12438 1.50495 0.86572 0.82806 0.79449 0.78692 1.20254 1.21222 1.20122 1.21023 0.93632 0.96093 0.87571 1.22941 1.01327 0.93878 1.00101 1.23029 1.02633 0.93975 1.02730 1.22894 1.03124 1.04572 0.90736 0.90356 0.89738 0.89101 0.81141 0.81523 0.87852 0.89765 0.89656 0.88934 0.95024 0.93885 0.92709 0.89451 0.91390 0.87373 0.89043 0.89346 0.88982 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.97 59.85 0.66 1.15 16 2 N -0.46 -4.99 3.15 -121.28 -0.38 -5.38 16 3 C -0.07 -0.68 11.58 -16.56 -0.19 -0.87 16 4 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 5 N -0.49 -7.55 11.25 -10.82 -0.12 -7.67 16 6 C 0.22 3.01 7.16 -155.42 -1.11 1.90 16 7 C -0.02 -0.29 4.81 -27.89 -0.13 -0.42 16 8 C -0.13 -2.00 4.23 -27.88 -0.12 -2.12 16 9 C 0.51 10.28 7.67 -10.98 -0.08 10.20 16 10 O -0.54 -13.22 15.56 5.55 0.09 -13.13 16 11 N -0.59 -12.26 2.46 -175.06 -0.43 -12.69 16 12 C 0.25 6.35 5.16 -5.20 -0.03 6.33 16 13 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 14 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.14 2.27 5.50 -4.04 -0.02 2.25 16 22 C -0.16 -2.20 5.97 -90.62 -0.54 -2.74 16 23 C -0.19 -1.99 9.19 -26.73 -0.25 -2.24 16 24 C -0.18 -1.93 10.25 -26.73 -0.27 -2.21 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.64 7.04 -51.93 -0.37 0.28 16 28 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 31 H 0.08 1.14 7.02 -51.93 -0.36 0.78 16 32 H 0.09 1.09 6.88 -51.93 -0.36 0.73 16 33 H 0.09 1.38 7.40 -51.93 -0.38 0.99 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.09 1.48 8.07 -51.93 -0.42 1.07 16 38 H 0.07 0.96 6.17 -51.93 -0.32 0.64 16 39 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -34.70 360.90 -9.19 -43.89 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.77 Total: 1.31 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.73 Total: -2.90 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.20 Total: -51.59 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.70 -9.19 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123556224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.458 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds