Wall clock time and date at job start Tue Mar 31 2020 07:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36884 * 126.40307 * 2 1 4 4 C 1.34662 * 106.82136 * 180.25225 * 3 2 1 5 5 N 1.34131 * 108.01965 * 359.74695 * 4 3 2 6 6 C 1.30496 * 109.25655 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.65172 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47491 * 90.01812 * 7 6 5 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 11 9 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46927 * 59.99717 * 17 15 13 19 19 H 1.48496 * 109.47287 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47040 * 299.99940 * 17 15 13 21 21 C 1.46506 * 120.00264 * 0.28128 * 11 9 8 22 22 C 1.52998 * 109.47320 * 89.99349 * 21 11 9 23 23 C 1.52997 * 117.50231 * 243.62602 * 22 21 11 24 24 C 1.52998 * 117.50058 * 174.99994 * 22 21 11 25 25 H 1.08996 * 109.47105 * 270.18881 * 1 2 3 26 26 H 1.09006 * 109.46986 * 30.18430 * 1 2 3 27 27 H 1.08999 * 109.47076 * 150.18318 * 1 2 3 28 28 H 1.08001 * 126.58857 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.99342 * 179.71763 * 4 3 2 30 30 H 1.09004 * 109.46801 * 330.01851 * 7 6 5 31 31 H 1.09000 * 109.47461 * 210.02383 * 7 6 5 32 32 H 1.09004 * 109.47066 * 60.00201 * 8 7 6 33 33 H 1.08994 * 109.47405 * 300.00031 * 8 7 6 34 34 H 1.09001 * 109.47567 * 210.00057 * 12 11 9 35 35 H 1.09005 * 109.47076 * 330.00563 * 12 11 9 36 36 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.46996 * 209.99677 * 21 11 9 38 38 H 1.09001 * 109.46578 * 329.99540 * 21 11 9 39 39 H 1.09001 * 115.54721 * 29.33740 * 22 21 11 40 40 H 1.09000 * 117.49450 * 0.02562 * 23 22 21 41 41 H 1.08994 * 117.49954 * 145.01950 * 23 22 21 42 42 H 1.08996 * 117.50282 * 214.98430 * 24 22 21 43 43 H 1.09000 * 117.49560 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6504 -0.0057 5 7 3.5095 -0.6904 -0.0034 6 6 2.2663 -1.0870 0.0040 7 6 1.8017 -2.5206 0.0093 8 6 1.6517 -3.0029 1.4535 9 6 1.1865 -4.4363 1.4587 10 8 0.9944 -5.0153 0.4105 11 7 0.9899 -5.0767 2.6282 12 6 0.5435 -6.4720 2.6333 13 6 1.7436 -7.3834 2.6255 14 1 2.7393 -6.9651 2.6179 15 6 1.5705 -8.7513 2.6279 16 7 0.3580 -9.2607 2.6366 17 14 3.0582 -9.8810 2.6190 18 1 3.8839 -9.6216 3.8257 19 1 2.6057 -11.2953 2.6240 20 1 3.8675 -9.6240 1.4008 21 6 1.2225 -4.3775 3.8944 22 6 -0.0704 -3.6944 4.3448 23 6 -0.0694 -2.1669 4.4313 24 6 -0.0666 -3.0056 5.7110 25 1 -0.3633 0.0034 1.0276 26 1 -0.3633 0.8884 -0.5167 27 1 -0.3633 -0.8916 -0.5110 28 1 1.9614 2.1345 -0.0004 29 1 4.4369 1.2610 -0.0115 30 1 2.5338 -3.1416 -0.5070 31 1 0.8406 -2.5930 -0.4996 32 1 0.9197 -2.3818 1.9698 33 1 2.6129 -2.9306 1.9624 34 1 -0.0500 -6.6604 3.5279 35 1 -0.0632 -6.6626 1.7479 36 1 0.2363 -10.2229 2.6387 37 1 1.5379 -5.0942 4.6526 38 1 2.0011 -3.6271 3.7574 39 1 -0.9935 -4.1804 4.0288 40 1 0.8523 -1.6485 4.1668 41 1 -0.9919 -1.6476 4.1719 42 1 -0.9872 -3.0379 6.2935 43 1 0.8571 -3.0386 6.2886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123556224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:47 Heat of formation + Delta-G solvation = 24.932582 kcal Electronic energy + Delta-G solvation = -23418.163885 eV Core-core repulsion = 20078.381834 eV Total energy + Delta-G solvation = -3339.782052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.00057 -40.83214 -38.39304 -36.21102 -34.97921 -34.70822 -34.41971 -30.50854 -29.36200 -27.89746 -27.58189 -26.05039 -24.06591 -23.19064 -22.25084 -21.83334 -20.63303 -19.89761 -18.61124 -18.32351 -17.56718 -17.21856 -16.70614 -16.59493 -16.04572 -15.92856 -15.53995 -14.93617 -14.73365 -14.46587 -14.34450 -13.94534 -13.85079 -13.78387 -13.56124 -13.44759 -13.20624 -12.93265 -12.84615 -12.55708 -12.49822 -12.30900 -12.20497 -12.15121 -11.73373 -11.25458 -10.93104 -10.89344 -10.63432 -10.55981 -10.50832 -9.44590 -9.27482 -8.22015 -6.36434 1.11354 1.36597 1.40771 1.47932 1.81398 1.93766 2.14955 2.32075 2.45238 2.95406 3.07533 3.37843 3.74778 3.90063 3.92715 4.01517 4.03055 4.04500 4.17591 4.24484 4.30349 4.43488 4.51383 4.62645 4.69172 4.71311 4.75041 4.82451 4.84118 4.95557 5.01958 5.06302 5.06928 5.23811 5.31409 5.33523 5.40690 5.56930 5.84757 5.89899 6.07345 6.27092 6.69723 6.78993 7.21222 7.28499 7.47300 8.84859 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.004231 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.683421 B = 6616.477113 C = 7605.583475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.454 5.454 3 C -0.043 4.043 4 C -0.060 4.060 5 N -0.531 5.531 6 C 0.194 3.806 7 C -0.011 4.011 8 C -0.110 4.110 9 C 0.501 3.499 10 O -0.594 6.594 11 N -0.598 5.598 12 C 0.264 3.736 13 C -0.545 4.545 14 H 0.051 0.949 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.964 3.036 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.141 3.859 22 C -0.190 4.190 23 C -0.163 4.163 24 C -0.163 4.163 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.214 0.786 29 H 0.184 0.816 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.021 0.979 35 H -0.001 1.001 36 H 0.267 0.733 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 24.279 2.143 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.136 5.136 3 C -0.176 4.176 4 C -0.208 4.208 5 N -0.251 5.251 6 C -0.068 4.068 7 C -0.051 4.051 8 C -0.151 4.151 9 C 0.291 3.709 10 O -0.475 6.475 11 N -0.328 5.328 12 C 0.142 3.858 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.789 3.211 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.204 1.204 21 C 0.018 3.982 22 C -0.209 4.209 23 C -0.200 4.200 24 C -0.201 4.201 25 H 0.113 0.887 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.230 0.770 29 H 0.201 0.799 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.039 0.961 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.392 23.291 1.618 23.388 hybrid contribution -0.121 -0.756 -0.164 0.783 sum -1.514 22.535 1.454 22.632 Atomic orbital electron populations 1.22408 0.74454 1.06039 1.05296 1.45533 1.08940 1.05944 1.53155 1.23274 0.90533 0.93725 1.10113 1.22752 0.98306 0.90479 1.09262 1.70200 1.19903 1.13930 1.21038 1.22963 0.86013 0.91001 1.06853 1.19526 1.02399 0.86595 0.96540 1.21520 1.03877 0.91367 0.98296 1.21138 0.77175 0.89538 0.83084 1.90642 1.54037 1.69946 1.32884 1.48150 1.65385 1.13030 1.06190 1.18697 0.94275 0.77182 0.95603 1.21694 0.93345 0.91995 1.51298 0.93041 1.25815 0.99039 0.99625 0.94411 1.70036 1.22708 1.12961 1.50994 0.85518 0.79125 0.77542 0.78951 1.18565 1.20190 1.20411 1.21211 0.95976 0.96024 0.84943 1.22637 0.98774 0.96159 1.03378 1.23138 1.04061 0.91412 1.01363 1.23012 1.04188 1.02784 0.90102 0.88718 0.86861 0.89573 0.76971 0.79875 0.90769 0.89321 0.86638 0.88351 0.96059 0.98250 0.92396 0.90987 0.88865 0.89633 0.87792 0.87647 0.87927 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.97 127.77 1.40 2.03 16 2 N -0.45 -8.54 3.15 -537.62 -1.69 -10.24 16 3 C -0.04 -0.71 11.58 83.08 0.96 0.25 16 4 C -0.06 -1.36 11.87 83.52 0.99 -0.37 16 5 N -0.53 -15.99 11.25 -188.14 -2.12 -18.11 16 6 C 0.19 5.16 7.16 138.13 0.99 6.15 16 7 C -0.01 -0.32 4.81 29.85 0.14 -0.18 16 8 C -0.11 -3.23 4.23 29.85 0.13 -3.10 16 9 C 0.50 20.95 7.67 87.66 0.67 21.62 16 10 O -0.59 -30.66 15.56 -3.04 -0.05 -30.71 16 11 N -0.60 -25.61 2.46 -826.15 -2.03 -27.64 16 12 C 0.26 14.40 5.16 85.63 0.44 14.85 16 13 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 14 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 15 C 0.01 0.60 5.46 84.66 0.46 1.06 16 16 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 17 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 C 0.14 4.52 5.50 86.38 0.47 4.99 16 22 C -0.19 -4.94 5.97 -10.80 -0.06 -5.01 16 23 C -0.16 -2.90 9.19 30.59 0.28 -2.62 16 24 C -0.16 -3.15 10.25 30.59 0.31 -2.84 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.09 1.03 7.04 -2.39 -0.02 1.01 16 28 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 29 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.07 2.58 8.10 -2.38 -0.02 2.56 16 31 H 0.09 2.45 7.02 -2.39 -0.02 2.43 16 32 H 0.12 2.67 6.88 -2.38 -0.02 2.66 16 33 H 0.10 2.82 7.40 -2.39 -0.02 2.80 16 34 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 35 H 0.00 -0.04 7.42 -2.38 -0.02 -0.06 16 36 H 0.27 15.33 8.31 -92.72 -0.77 14.56 16 37 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 38 H 0.09 2.47 6.17 -2.39 -0.01 2.46 16 39 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16 41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -80.11 360.90 4.85 -75.27 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.99 Total: 14.95 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 7.44 Total: 5.07 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -5.56 Total: -112.37 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -80.11 4.85 -75.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123556224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.200 kcal (2) G-P(sol) polarization free energy of solvation -80.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds