Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 C 1.50699 * 109.47135 * 179.97438 * 4 3 2 6 6 O 1.21291 * 120.00045 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00108 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99951 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46669 * 180.02562 * 8 7 5 10 10 N 1.46504 * 109.47058 * 179.97438 * 9 8 7 11 11 C 1.36934 * 120.00288 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99707 * 359.97438 * 11 10 9 13 13 C 1.38811 * 120.00063 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99932 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00041 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46931 * 90.00152 * 15 13 11 17 17 H 1.48503 * 109.47371 * 209.99878 * 15 13 11 18 18 H 1.48499 * 109.47217 * 330.00018 * 15 13 11 19 19 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 20 20 C 1.38914 * 120.07317 * 359.97438 * 19 2 1 21 21 C 1.38100 * 119.92419 * 179.97438 * 20 19 2 22 22 C 1.38288 * 120.07489 * 359.97438 * 21 20 19 23 23 C 1.38283 * 120.14964 * 0.27921 * 22 21 20 24 24 C 1.38104 * 120.07445 * 359.44998 * 23 22 21 25 25 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 26 26 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 27 27 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 28 28 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 29 29 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 30 30 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 31 31 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 32 32 H 0.97002 * 119.99863 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.47051 * 299.99648 * 8 7 5 34 34 H 1.08995 * 109.47227 * 59.99781 * 8 7 5 35 35 H 1.09001 * 109.47475 * 299.99738 * 9 8 7 36 36 H 1.09000 * 109.47524 * 60.00361 * 9 8 7 37 37 H 0.97000 * 119.99549 * 0.02562 * 10 9 8 38 38 H 0.97004 * 119.99472 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.03435 * 359.97438 * 20 19 2 40 40 H 1.08000 * 119.95830 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.92149 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.96059 * 179.69879 * 23 22 21 43 43 H 1.07999 * 120.04050 * 180.27354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2054 3.0160 -1.4424 6 8 3.5086 3.5411 -0.3920 7 7 3.5418 3.5999 -2.6096 8 6 4.2742 4.8687 -2.6095 9 6 4.5280 5.3111 -4.0520 10 7 5.2599 6.5802 -4.0520 11 6 5.6006 7.1741 -5.2378 12 1 5.3302 6.7067 -6.1731 13 6 6.2946 8.3763 -5.2378 14 7 6.6254 8.9451 -4.0979 15 14 6.7601 9.1861 -6.8555 16 1 5.6709 10.1007 -7.2827 17 1 8.0152 9.9599 -6.6786 18 1 6.9643 8.1417 -7.8912 19 6 2.1634 -1.2096 -0.0005 20 6 1.4704 -2.4135 -0.0005 21 6 2.1641 -3.6077 -0.0016 22 6 3.5470 -3.6058 -0.0032 23 6 4.2399 -2.4092 0.0021 24 6 3.5525 -1.2114 -0.0025 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0416 0.9509 -1.9563 31 1 1.5001 1.8408 -1.9562 32 1 3.2990 3.1801 -3.4497 33 1 3.6853 5.6281 -2.0952 34 1 5.2268 4.7383 -2.0961 35 1 5.1167 4.5518 -4.5667 36 1 3.5751 5.4417 -4.5650 37 1 5.5030 6.9997 -3.2119 38 1 7.1100 9.7854 -4.0979 39 1 0.3904 -2.4156 0.0003 40 1 1.6259 -4.5440 -0.0020 41 1 4.0869 -4.5412 -0.0036 42 1 5.3199 -2.4113 0.0057 43 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135448284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = 6.792663 kcal Electronic energy + Delta-G solvation = -21862.272983 eV Core-core repulsion = 18521.704326 eV Total energy + Delta-G solvation = -3340.568658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.08781 -39.39493 -36.68652 -35.69208 -33.85886 -32.28933 -31.27200 -30.90167 -29.79792 -27.96395 -26.42984 -24.26749 -23.27679 -22.31459 -21.49768 -20.86889 -20.15395 -18.01616 -17.40037 -17.04408 -15.95283 -15.72635 -15.65716 -15.56588 -14.76708 -14.75098 -14.52558 -14.21556 -13.93820 -13.68341 -13.38106 -13.20531 -12.91450 -12.84325 -12.80131 -12.44921 -12.30222 -11.61001 -11.49766 -11.33779 -11.13140 -10.96466 -10.84509 -10.82333 -10.19170 -10.13849 -9.89785 -9.70499 -9.11746 -9.01362 -8.85743 -7.54975 -7.01653 -5.81483 -3.12369 1.24538 1.41093 2.66755 2.71955 3.35087 3.41003 3.46451 3.48087 3.71140 4.55075 4.58081 4.60710 4.66893 4.79563 4.84949 4.92521 5.01393 5.16828 5.24773 5.27822 5.32706 5.39743 5.43203 5.48145 5.51824 5.58756 5.75098 5.75377 5.83164 5.93784 6.07255 6.12553 6.30376 6.45533 6.45886 6.65539 6.67671 6.71212 6.98507 7.25516 7.56704 7.63969 8.26669 8.36164 9.47338 10.01924 10.36662 11.41042 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.002170 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.077354 B =12899.263189 C =13264.850652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.633 5.633 3 C 0.139 3.861 4 C -0.161 4.161 5 C 0.513 3.487 6 O -0.544 6.544 7 N -0.723 5.723 8 C 0.110 3.890 9 C 0.145 3.855 10 N -0.730 5.730 11 C -0.245 4.245 12 H 0.072 0.928 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.911 3.089 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.216 3.784 20 C -0.200 4.200 21 C -0.075 4.075 22 C -0.182 4.182 23 C -0.072 4.072 24 C -0.197 4.197 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.400 0.600 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 -25.060 8.248 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.343 5.343 3 C 0.016 3.984 4 C -0.202 4.202 5 C 0.298 3.702 6 O -0.422 6.422 7 N -0.374 5.374 8 C -0.014 4.014 9 C 0.016 3.984 10 N -0.375 5.375 11 C -0.376 4.376 12 H 0.090 0.910 13 C -0.209 4.209 14 N -0.578 5.578 15 Si 0.741 3.259 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 C 0.114 3.886 20 C -0.222 4.222 21 C -0.094 4.094 22 C -0.202 4.202 23 C -0.091 4.091 24 C -0.219 4.219 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.234 0.766 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.599 -24.452 8.841 28.893 hybrid contribution 0.223 0.507 -1.148 1.275 sum -12.376 -23.945 7.692 28.030 Atomic orbital electron populations 1.21648 0.79592 1.02626 1.01265 1.46514 1.04888 1.02901 1.79989 1.21145 0.98302 0.84461 0.94538 1.22117 1.01792 0.95609 1.00709 1.20469 0.79619 0.86241 0.83891 1.90728 1.54928 1.65334 1.31198 1.45976 1.58179 1.24806 1.08442 1.21584 0.96431 0.84107 0.99236 1.20757 0.95593 0.89990 0.92022 1.42194 1.67019 1.21438 1.06836 1.19189 1.29888 1.02637 0.85839 0.91032 1.24793 1.01068 0.97986 0.97041 1.69671 1.44633 1.19521 1.24019 0.86140 0.77702 0.79265 0.82746 1.21618 1.21666 1.20699 1.17874 0.91272 0.85695 0.93737 1.20673 0.99541 0.91171 1.10853 1.20876 0.94258 0.97114 0.97114 1.20911 0.94286 0.97830 1.07200 1.20931 0.99576 0.91976 0.96581 1.20791 0.92235 0.98918 1.09959 0.93289 0.91405 0.91363 0.89772 0.89625 0.88617 0.88813 0.76632 0.91289 0.91262 0.95808 0.95842 0.77999 0.93343 0.86177 0.86414 0.86631 0.86208 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.19 59.85 0.61 1.19 16 2 N -0.63 -5.50 3.01 -179.62 -0.54 -6.04 16 3 C 0.14 1.33 4.45 -4.04 -0.02 1.31 16 4 C -0.16 -1.47 6.02 -27.88 -0.17 -1.64 16 5 C 0.51 6.75 7.83 -10.99 -0.09 6.66 16 6 O -0.54 -9.35 15.98 5.55 0.09 -9.26 16 7 N -0.72 -9.46 5.56 -60.30 -0.33 -9.79 16 8 C 0.11 1.87 5.79 -4.04 -0.02 1.84 16 9 C 0.14 2.81 6.37 -4.04 -0.03 2.79 16 10 N -0.73 -18.54 5.60 -59.91 -0.34 -18.88 16 11 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 12 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 14 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 15 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.22 2.09 6.55 -83.79 -0.55 1.54 16 20 C -0.20 -1.74 9.21 -39.38 -0.36 -2.10 16 21 C -0.07 -0.62 10.04 -39.61 -0.40 -1.01 16 22 C -0.18 -1.56 10.04 -39.55 -0.40 -1.95 16 23 C -0.07 -0.66 10.04 -39.61 -0.40 -1.06 16 24 C -0.20 -1.96 9.21 -39.38 -0.36 -2.32 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 27 H 0.07 0.37 6.20 -51.93 -0.32 0.04 16 28 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 29 H 0.09 0.91 6.16 -51.92 -0.32 0.59 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.40 4.10 8.47 -40.82 -0.35 3.75 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.39 7.67 -40.82 -0.31 10.07 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.12 0.84 6.14 -52.49 -0.32 0.52 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 1.22 6.14 -52.49 -0.32 0.89 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -33.34 359.50 -8.98 -42.33 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.56 Total: 8.70 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.42 Total: -2.19 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.49 Total: -62.25 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.34 -8.98 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135448284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.119 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds