Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 C 1.50699 * 109.47135 * 179.97438 * 4 3 2 6 6 O 1.21291 * 120.00045 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00108 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99951 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46669 * 180.02562 * 8 7 5 10 10 N 1.46504 * 109.47058 * 179.97438 * 9 8 7 11 11 C 1.36934 * 120.00288 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99707 * 359.97438 * 11 10 9 13 13 C 1.38811 * 120.00063 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99932 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00041 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46931 * 90.00152 * 15 13 11 17 17 H 1.48503 * 109.47371 * 209.99878 * 15 13 11 18 18 H 1.48499 * 109.47217 * 330.00018 * 15 13 11 19 19 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 20 20 C 1.38914 * 120.07317 * 359.97438 * 19 2 1 21 21 C 1.38100 * 119.92419 * 179.97438 * 20 19 2 22 22 C 1.38288 * 120.07489 * 359.97438 * 21 20 19 23 23 C 1.38283 * 120.14964 * 0.27921 * 22 21 20 24 24 C 1.38104 * 120.07445 * 359.44998 * 23 22 21 25 25 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 26 26 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 27 27 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 28 28 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 29 29 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 30 30 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 31 31 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 32 32 H 0.97002 * 119.99863 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.47051 * 299.99648 * 8 7 5 34 34 H 1.08995 * 109.47227 * 59.99781 * 8 7 5 35 35 H 1.09001 * 109.47475 * 299.99738 * 9 8 7 36 36 H 1.09000 * 109.47524 * 60.00361 * 9 8 7 37 37 H 0.97000 * 119.99549 * 0.02562 * 10 9 8 38 38 H 0.97004 * 119.99472 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.03435 * 359.97438 * 20 19 2 40 40 H 1.08000 * 119.95830 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.92149 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.96059 * 179.69879 * 23 22 21 43 43 H 1.07999 * 120.04050 * 180.27354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2054 3.0160 -1.4424 6 8 3.5086 3.5411 -0.3920 7 7 3.5418 3.5999 -2.6096 8 6 4.2742 4.8687 -2.6095 9 6 4.5280 5.3111 -4.0520 10 7 5.2599 6.5802 -4.0520 11 6 5.6006 7.1741 -5.2378 12 1 5.3302 6.7067 -6.1731 13 6 6.2946 8.3763 -5.2378 14 7 6.6254 8.9451 -4.0979 15 14 6.7601 9.1861 -6.8555 16 1 5.6709 10.1007 -7.2827 17 1 8.0152 9.9599 -6.6786 18 1 6.9643 8.1417 -7.8912 19 6 2.1634 -1.2096 -0.0005 20 6 1.4704 -2.4135 -0.0005 21 6 2.1641 -3.6077 -0.0016 22 6 3.5470 -3.6058 -0.0032 23 6 4.2399 -2.4092 0.0021 24 6 3.5525 -1.2114 -0.0025 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0416 0.9509 -1.9563 31 1 1.5001 1.8408 -1.9562 32 1 3.2990 3.1801 -3.4497 33 1 3.6853 5.6281 -2.0952 34 1 5.2268 4.7383 -2.0961 35 1 5.1167 4.5518 -4.5667 36 1 3.5751 5.4417 -4.5650 37 1 5.5030 6.9997 -3.2119 38 1 7.1100 9.7854 -4.0979 39 1 0.3904 -2.4156 0.0003 40 1 1.6259 -4.5440 -0.0020 41 1 4.0869 -4.5412 -0.0036 42 1 5.3199 -2.4113 0.0057 43 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135448284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = -15.215721 kcal Electronic energy + Delta-G solvation = -21863.227338 eV Core-core repulsion = 18521.704326 eV Total energy + Delta-G solvation = -3341.523013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00153 -40.26895 -37.53435 -37.12249 -35.49727 -33.36923 -32.79772 -31.66390 -30.47624 -29.45152 -27.26617 -25.67606 -24.53898 -23.12952 -22.91944 -21.68580 -21.12608 -19.33672 -18.70381 -18.11388 -17.00969 -16.92739 -16.55397 -16.42639 -16.27652 -15.76793 -15.53908 -15.19803 -15.11187 -14.92238 -14.64957 -14.40929 -14.11067 -13.81199 -13.42729 -13.19433 -13.06151 -13.05045 -12.80558 -12.66990 -12.51638 -12.23198 -12.11216 -12.09428 -11.87593 -11.61363 -11.06539 -11.00391 -10.72420 -10.15513 -9.77568 -9.08144 -8.20227 -7.98118 -5.29704 0.58704 0.74991 1.47782 1.50212 1.58667 1.59471 1.91428 2.36585 2.58580 3.04862 3.36017 3.74550 3.88201 3.95709 4.01091 4.06658 4.16670 4.20168 4.21234 4.36165 4.44304 4.51890 4.57820 4.64516 4.67679 4.70179 4.75267 4.92510 4.95466 5.00594 5.04842 5.11916 5.21551 5.37477 5.41945 5.47957 5.67034 5.80866 6.03038 6.22680 6.34291 6.51749 6.60390 7.21451 7.28834 8.00666 8.23523 9.25471 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.002170 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.077354 B =12899.263189 C =13264.850652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.633 5.633 3 C 0.143 3.857 4 C -0.143 4.143 5 C 0.513 3.487 6 O -0.587 6.587 7 N -0.712 5.712 8 C 0.127 3.873 9 C 0.149 3.851 10 N -0.748 5.748 11 C -0.248 4.248 12 H 0.083 0.917 13 C -0.078 4.078 14 N -0.971 5.971 15 Si 0.980 3.020 16 H -0.285 1.285 17 H -0.296 1.296 18 H -0.266 1.266 19 C 0.202 3.798 20 C -0.206 4.206 21 C -0.079 4.079 22 C -0.191 4.191 23 C -0.084 4.084 24 C -0.216 4.216 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.417 0.583 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 -27.031 6.818 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.344 5.344 3 C 0.019 3.981 4 C -0.184 4.184 5 C 0.300 3.700 6 O -0.468 6.468 7 N -0.365 5.365 8 C 0.002 3.998 9 C 0.022 3.978 10 N -0.391 5.391 11 C -0.380 4.380 12 H 0.101 0.899 13 C -0.271 4.271 14 N -0.621 5.621 15 Si 0.808 3.192 16 H -0.212 1.212 17 H -0.223 1.223 18 H -0.190 1.190 19 C 0.101 3.899 20 C -0.228 4.228 21 C -0.097 4.097 22 C -0.211 4.211 23 C -0.102 4.102 24 C -0.239 4.239 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.205 0.795 38 H 0.061 0.939 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.107 -26.493 7.368 30.906 hybrid contribution 0.632 1.010 -0.656 1.360 sum -13.475 -25.483 6.712 29.597 Atomic orbital electron populations 1.21811 0.78077 1.03795 1.01808 1.46548 1.05714 1.02143 1.79975 1.20992 0.97667 0.84935 0.94556 1.22033 1.02393 0.93058 1.00908 1.21170 0.78875 0.87024 0.82911 1.90717 1.56593 1.66705 1.32763 1.45801 1.57594 1.23474 1.09596 1.21133 0.95848 0.85509 0.97297 1.20855 0.95466 0.87866 0.93638 1.42440 1.67691 1.23286 1.05710 1.19649 1.28727 1.02605 0.87012 0.89900 1.25697 1.01884 0.99045 1.00440 1.69841 1.46051 1.19886 1.26305 0.85046 0.76860 0.78298 0.78949 1.21231 1.22302 1.19031 1.18055 0.91321 0.86411 0.94126 1.20928 1.00494 0.90912 1.10464 1.21214 0.94339 0.97998 0.96179 1.21190 0.94805 0.98231 1.06839 1.21149 1.00285 0.92143 0.96673 1.20872 0.92789 0.98988 1.11222 0.93081 0.90309 0.90116 0.90236 0.91370 0.87435 0.86217 0.74588 0.92846 0.93006 0.94570 0.94432 0.79468 0.93892 0.84524 0.84145 0.85009 0.85329 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.19 127.77 1.30 2.22 16 2 N -0.63 -10.13 3.01 -722.18 -2.17 -12.30 16 3 C 0.14 2.63 4.45 86.38 0.38 3.01 16 4 C -0.14 -2.35 6.02 29.85 0.18 -2.17 16 5 C 0.51 13.08 7.83 87.66 0.69 13.77 16 6 O -0.59 -20.45 15.98 -3.06 -0.05 -20.50 16 7 N -0.71 -17.69 5.56 -463.07 -2.57 -20.26 16 8 C 0.13 4.30 5.79 86.38 0.50 4.80 16 9 C 0.15 5.62 6.37 86.38 0.55 6.17 16 10 N -0.75 -38.08 5.60 -343.45 -1.92 -40.00 16 11 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 12 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 13 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 14 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 15 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 C 0.20 3.69 6.55 38.21 0.25 3.94 16 20 C -0.21 -3.19 9.21 22.40 0.21 -2.98 16 21 C -0.08 -1.13 10.04 22.25 0.22 -0.91 16 22 C -0.19 -2.97 10.04 22.29 0.22 -2.75 16 23 C -0.08 -1.49 10.04 22.25 0.22 -1.26 16 24 C -0.22 -4.26 9.21 22.40 0.21 -4.05 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 0.65 8.07 -2.39 -0.02 0.64 16 27 H 0.08 0.65 6.20 -2.39 -0.01 0.63 16 28 H 0.08 1.53 8.03 -2.39 -0.02 1.51 16 29 H 0.07 1.49 6.16 -2.38 -0.01 1.48 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.42 7.52 8.47 -92.71 -0.79 6.73 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.37 20.59 7.67 -92.71 -0.71 19.88 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.14 1.56 6.14 -2.91 -0.02 1.55 16 40 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 43 H 0.12 2.35 6.14 -2.91 -0.02 2.33 16 Total: -1.00 -72.03 359.50 1.36 -70.68 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.48 Total: 31.52 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.24 Total: 2.83 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -6.39 Total: -132.26 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.03 1.36 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135448284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.460 kcal (2) G-P(sol) polarization free energy of solvation -72.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds