Wall clock time and date at job start Tue Mar 31 2020 07:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00362 * 2 1 4 4 C 1.50701 * 109.47141 * 66.04117 * 3 2 1 5 5 H 1.07998 * 120.00112 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99643 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00506 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99452 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47590 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.46991 * 119.99970 * 8 6 4 11 11 H 1.48501 * 109.46856 * 239.99509 * 8 6 4 12 12 C 1.46898 * 111.00432 * 236.04089 * 2 1 3 13 13 C 1.50704 * 109.47016 * 293.96144 * 12 2 1 14 14 C 1.38883 * 120.74390 * 270.24421 * 13 12 2 15 15 C 1.38020 * 119.32966 * 180.30793 * 14 13 12 16 16 N 1.31981 * 120.85411 * 359.43490 * 15 14 13 17 17 C 1.32394 * 121.62128 * 0.27550 * 16 15 14 18 18 N 1.39003 * 119.70593 * 179.97438 * 17 16 15 19 19 C 1.47016 * 110.99876 * 123.63621 * 18 17 16 20 20 C 1.53104 * 109.25504 * 177.61089 * 19 18 17 21 21 O 1.43010 * 109.25875 * 56.84853 * 20 19 18 22 22 C 1.43018 * 113.73910 * 301.33024 * 21 20 19 23 23 C 1.47017 * 110.99618 * 0.02562 * 18 17 16 24 24 C 1.38294 * 120.74863 * 89.99728 * 13 12 2 25 25 H 1.08999 * 109.47383 * 183.95756 * 1 2 3 26 26 H 1.08996 * 109.47261 * 303.96128 * 1 2 3 27 27 H 1.09003 * 109.46479 * 63.95412 * 1 2 3 28 28 H 1.08994 * 109.47222 * 186.04271 * 3 2 1 29 29 H 1.08996 * 109.46854 * 306.04533 * 3 2 1 30 30 H 0.96999 * 120.00337 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47395 * 173.95251 * 12 2 1 32 32 H 1.09007 * 109.46628 * 53.95371 * 12 2 1 33 33 H 1.08003 * 120.33805 * 0.02562 * 14 13 12 34 34 H 1.08002 * 119.57645 * 179.71548 * 15 14 13 35 35 H 1.09005 * 109.50442 * 297.54355 * 19 18 17 36 36 H 1.08999 * 109.50851 * 57.67266 * 19 18 17 37 37 H 1.09000 * 109.50320 * 296.91413 * 20 19 18 38 38 H 1.08995 * 109.53747 * 176.80597 * 20 19 18 39 39 H 1.09001 * 109.50436 * 298.73506 * 22 21 20 40 40 H 1.09007 * 109.54262 * 178.62934 * 22 21 20 41 41 H 1.08998 * 109.50903 * 302.32342 * 23 18 17 42 42 H 1.09005 * 109.50639 * 62.45893 * 23 18 17 43 43 H 1.08004 * 120.45294 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0269 3.3496 1.5283 7 7 2.7113 4.0022 0.6145 8 14 1.5830 4.1869 3.1381 9 1 0.8156 3.2444 3.9913 10 1 2.8250 4.5945 3.8430 11 1 0.7552 5.3879 2.8595 12 6 1.9955 -0.7661 -1.1375 13 6 1.6369 -2.2205 -0.9727 14 6 2.4838 -3.0883 -0.2956 15 6 2.1295 -4.4160 -0.1674 16 7 0.9946 -4.8652 -0.6694 17 6 0.1581 -4.0685 -1.3162 18 7 -1.0265 -4.5840 -1.8293 19 6 -2.1894 -3.8509 -1.3083 20 6 -3.4651 -4.4109 -1.9431 21 8 -3.5468 -5.8140 -1.6788 22 6 -2.4305 -6.5589 -2.1731 23 6 -1.1446 -6.0206 -1.5402 24 6 0.4547 -2.7200 -1.4879 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.5741 0.8523 27 1 -0.3632 0.4513 -0.9234 28 1 3.0797 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 2.9859 4.9183 0.7764 31 1 3.0798 -0.6611 -1.1755 32 1 1.5612 -0.3873 -2.0627 33 1 3.4126 -2.7288 0.1224 34 1 2.7874 -5.0953 0.3543 35 1 -2.2392 -3.9693 -0.2258 36 1 -2.0937 -2.7936 -1.5554 37 1 -3.4391 -4.2442 -3.0200 38 1 -4.3343 -3.9092 -1.5180 39 1 -2.3745 -6.4547 -3.2567 40 1 -2.5508 -7.6109 -1.9144 41 1 -0.2861 -6.5476 -1.9566 42 1 -1.1780 -6.1733 -0.4614 43 1 -0.2292 -2.0721 -2.0162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137430057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:09 Heat of formation + Delta-G solvation = 12.939936 kcal Electronic energy + Delta-G solvation = -23259.000207 eV Core-core repulsion = 19918.698116 eV Total energy + Delta-G solvation = -3340.302092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86161 -39.21350 -36.89773 -35.72877 -33.15900 -32.08914 -31.40170 -30.50832 -27.58341 -27.08389 -26.90665 -24.67366 -23.90379 -22.67627 -21.80096 -20.69476 -20.03934 -17.49768 -16.77876 -16.38626 -16.12919 -15.88005 -15.52447 -15.24266 -15.06344 -14.92421 -14.65352 -14.27939 -14.13028 -13.73619 -13.42114 -13.19720 -12.61331 -12.15695 -12.04493 -11.89242 -11.71499 -11.60971 -11.44892 -11.10109 -10.96556 -10.92106 -10.72302 -10.55502 -10.28840 -9.99527 -9.69458 -9.46024 -9.42037 -9.20337 -8.49382 -8.13398 -7.36684 -6.08300 -4.09822 1.24553 1.40281 3.24630 3.27585 3.35275 3.40151 3.58724 3.90934 4.36016 4.39306 4.62657 4.70905 4.83748 4.87680 4.97220 5.03157 5.05432 5.18980 5.22666 5.28509 5.30167 5.37071 5.37566 5.54803 5.66359 5.71216 5.77397 5.86431 5.97081 6.02359 6.11966 6.22977 6.44620 6.53133 6.62453 6.67562 6.82771 7.10886 7.18373 7.24509 7.72364 7.98268 8.04031 8.09432 8.44897 8.97824 9.54703 11.02604 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.003306 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.814842 B = 8466.785312 C = 9128.970723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.533 5.533 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.086 3.914 13 C 0.004 3.996 14 C -0.175 4.175 15 C 0.118 3.882 16 N -0.526 5.526 17 C 0.301 3.699 18 N -0.477 5.477 19 C 0.020 3.980 20 C 0.065 3.935 21 O -0.385 6.385 22 C 0.060 3.940 23 C 0.032 3.968 24 C -0.176 4.176 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.012 0.988 28 H 0.031 0.969 29 H -0.007 1.007 30 H 0.261 0.739 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 -18.463 -6.394 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.257 5.257 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 C -0.042 4.042 13 C -0.005 4.005 14 C -0.196 4.196 15 C -0.039 4.039 16 N -0.241 5.241 17 C 0.070 3.930 18 N -0.196 5.196 19 C -0.106 4.106 20 C -0.012 4.012 21 O -0.304 6.304 22 C -0.017 4.017 23 C -0.095 4.095 24 C -0.199 4.199 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.639 -19.418 -6.326 21.804 hybrid contribution 0.167 1.956 0.576 2.046 sum -7.472 -17.461 -5.750 19.844 Atomic orbital electron populations 1.22286 0.88863 0.99571 1.00648 1.62156 1.07122 1.17861 1.38569 1.19777 0.95477 0.81079 0.96881 1.21173 1.34923 0.96892 1.01620 0.91787 1.24987 0.95249 0.97321 0.97034 1.69959 1.38352 1.11448 1.34016 0.86440 0.78201 0.79310 0.83471 1.19648 1.20949 1.21081 1.21099 1.00972 0.88397 0.93735 1.20271 0.92155 0.96302 0.91786 1.21950 1.02000 0.94121 1.01520 1.22433 0.92223 0.93922 0.95321 1.67494 1.05750 1.39155 1.11680 1.19632 0.91685 0.89957 0.91770 1.59427 1.00541 1.04934 1.54650 1.22974 0.89445 0.99343 0.98836 1.22698 0.96671 0.81639 1.00233 1.87995 1.43338 1.18791 1.80260 1.22787 0.84736 0.95966 0.98226 1.22626 0.99125 0.86941 1.00820 1.21418 0.98974 0.94535 1.04973 0.93687 0.90568 0.96956 0.95052 0.98945 0.92911 0.89863 0.94499 0.84589 0.82891 0.92640 0.88613 0.91954 0.87799 0.92287 0.88101 0.88723 0.92356 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 8.99 60.06 0.54 1.21 16 2 N -0.53 -11.18 4.74 -245.83 -1.17 -12.34 16 3 C 0.19 4.89 4.72 -4.97 -0.02 4.86 16 4 C -0.51 -14.01 8.46 -34.44 -0.29 -14.30 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.09 1.49 5.16 -4.98 -0.03 1.47 16 13 C 0.00 0.06 4.90 -104.36 -0.51 -0.46 16 14 C -0.17 -2.46 9.81 -39.42 -0.39 -2.85 16 15 C 0.12 1.54 11.17 -17.57 -0.20 1.34 16 16 N -0.53 -7.49 8.71 -12.44 -0.11 -7.60 16 17 C 0.30 4.23 6.40 -155.02 -0.99 3.24 16 18 N -0.48 -5.81 4.75 -172.88 -0.82 -6.64 16 19 C 0.02 0.22 5.40 -3.71 -0.02 0.20 16 20 C 0.06 0.59 7.01 37.21 0.26 0.85 16 21 O -0.39 -4.13 10.83 -35.23 -0.38 -4.51 16 22 C 0.06 0.54 7.01 37.21 0.26 0.80 16 23 C 0.03 0.35 4.82 -3.71 -0.02 0.33 16 24 C -0.18 -2.54 7.23 -39.23 -0.28 -2.82 16 25 H 0.04 0.76 6.18 -51.93 -0.32 0.44 16 26 H 0.08 1.57 6.76 -51.93 -0.35 1.22 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 29 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.08 1.42 7.89 -51.93 -0.41 1.01 16 32 H 0.04 0.63 8.08 -51.92 -0.42 0.21 16 33 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.97 6.83 -51.93 -0.35 0.61 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 1.03 7.86 -51.93 -0.41 0.63 16 42 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 43 H 0.13 1.76 7.19 -52.48 -0.38 1.38 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -31.02 344.99 -10.13 -41.15 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.78 Total: -1.41 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.78 Total: -4.67 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -1.36 Total: -52.12 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.38 Total: -4.51 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.02 -10.13 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137430057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.093 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds