Wall clock time and date at job start Tue Mar 31 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46507 * 109.47186 * 2 1 4 4 C 1.36933 * 120.00231 * 275.73731 * 3 2 1 5 5 H 1.08000 * 119.99735 * 33.26244 * 4 3 2 6 6 C 1.38806 * 120.00036 * 213.26603 * 4 3 2 7 7 N 1.31618 * 120.00378 * 17.26941 * 6 4 3 8 8 Si 1.86801 * 120.00040 * 197.27007 * 6 4 3 9 9 H 1.48500 * 109.47237 * 89.99659 * 8 6 4 10 10 H 1.48507 * 109.47310 * 210.00028 * 8 6 4 11 11 H 1.48502 * 109.47115 * 329.99820 * 8 6 4 12 12 C 1.46503 * 119.99648 * 95.73390 * 3 2 1 13 13 H 1.09005 * 109.46556 * 180.09394 * 12 3 2 14 14 C 1.52988 * 109.47211 * 60.09271 * 12 3 2 15 15 C 1.53001 * 109.47183 * 300.08743 * 12 3 2 16 16 N 1.46493 * 109.47495 * 305.00868 * 15 12 3 17 17 C 1.34776 * 120.00178 * 179.97438 * 16 15 12 18 18 O 1.21556 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.47844 * 120.00347 * 179.97438 * 17 16 15 20 20 C 1.40019 * 120.56323 * 180.02562 * 19 17 16 21 21 C 1.38350 * 118.28997 * 179.70768 * 20 19 17 22 22 C 1.38352 * 119.30677 * 0.27084 * 21 20 19 23 23 C 1.50691 * 119.46480 * 180.02562 * 22 21 20 24 24 N 1.31930 * 121.07543 * 0.02595 * 22 21 20 25 25 C 1.31694 * 121.88051 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47847 * 59.99782 * 1 2 3 27 27 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47302 * 299.99450 * 1 2 3 29 29 H 1.09001 * 109.47302 * 240.00550 * 2 1 3 30 30 H 1.09005 * 109.47676 * 120.00251 * 2 1 3 31 31 H 0.96997 * 120.00430 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47116 * 179.97438 * 14 12 3 33 33 H 1.09005 * 109.47461 * 299.99568 * 14 12 3 34 34 H 1.09000 * 109.47101 * 60.00009 * 14 12 3 35 35 H 1.08999 * 109.47371 * 185.00020 * 15 12 3 36 36 H 1.09009 * 109.46813 * 65.00325 * 15 12 3 37 37 H 0.97005 * 120.00204 * 359.97438 * 16 15 12 38 38 H 1.08000 * 120.85552 * 359.97438 * 20 19 17 39 39 H 1.08006 * 120.34844 * 180.25543 * 21 20 19 40 40 H 1.09001 * 109.47575 * 90.00230 * 23 22 21 41 41 H 1.09004 * 109.47532 * 210.00242 * 23 22 21 42 42 H 1.09001 * 109.47541 * 330.00313 * 23 22 21 43 43 H 1.08000 * 119.71584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1348 2.0663 -1.1799 5 1 1.4368 1.8811 -1.9830 6 6 3.1499 2.9988 -1.3438 7 7 4.1869 2.9920 -0.5334 8 14 3.0442 4.2634 -2.7146 9 1 2.3484 5.4768 -2.2160 10 1 4.4136 4.6259 -3.1604 11 1 2.2865 3.6927 -3.8572 12 6 2.3819 2.0296 1.2624 13 1 2.7188 3.0472 1.0644 14 6 3.5077 1.2414 1.9347 15 6 1.1630 2.0667 2.1864 16 7 0.0465 2.7171 1.4960 17 6 -1.1390 2.8626 2.1204 18 8 -1.2820 2.4538 3.2561 19 6 -2.2656 3.5195 1.4239 20 6 -3.5021 3.6774 2.0616 21 6 -4.5221 4.3043 1.3683 22 6 -4.2919 4.7459 0.0775 23 6 -5.4001 5.4298 -0.6807 24 7 -3.1178 4.5781 -0.5004 25 6 -2.1162 3.9876 0.1180 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.8961 3.6438 -0.6476 32 1 3.7786 1.7240 2.8739 33 1 3.1708 0.2238 2.1328 34 1 4.3761 1.2150 1.2765 35 1 1.4080 2.6267 3.0888 36 1 0.8802 1.0490 2.4558 37 1 0.1605 3.0430 0.5895 38 1 -3.6544 3.3228 3.0703 39 1 -5.4881 4.4473 1.8297 40 1 -5.3573 6.5034 -0.4974 41 1 -5.2826 5.2384 -1.7474 42 1 -6.3624 5.0422 -0.3460 43 1 -1.1699 3.8683 -0.3886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151901246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:19 Heat of formation + Delta-G solvation = 12.634478 kcal Electronic energy + Delta-G solvation = -24044.091989 eV Core-core repulsion = 20703.776651 eV Total energy + Delta-G solvation = -3340.315337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52512 -38.86542 -36.91001 -33.85069 -33.06069 -32.35885 -31.88937 -31.05760 -28.41128 -28.02601 -25.36842 -23.95869 -23.75972 -22.55054 -21.69284 -20.16166 -19.31882 -17.72287 -16.84613 -16.73795 -15.77127 -15.19961 -15.02378 -14.91618 -14.51402 -14.40438 -13.96783 -13.60377 -13.20038 -13.02044 -12.71730 -12.58577 -12.43377 -12.34166 -12.11323 -12.06645 -11.84504 -11.52568 -11.07968 -10.96274 -10.82705 -10.71861 -10.30350 -10.11250 -9.92540 -9.89613 -9.65763 -9.45912 -9.31872 -9.04414 -8.54271 -8.43674 -6.69783 -5.90461 -3.39638 0.67920 1.19860 3.08180 3.31249 3.40322 3.41317 3.61548 3.91461 4.16577 4.40743 4.60697 4.85245 4.87708 5.10983 5.24404 5.25975 5.37060 5.38702 5.42384 5.56225 5.81020 5.88040 6.00483 6.03827 6.10176 6.17231 6.23765 6.35970 6.46109 6.52958 6.54894 6.59799 6.66492 6.81625 6.89930 6.98778 7.14827 7.45307 7.55220 7.75820 7.86728 8.04843 8.40783 8.60797 9.13908 9.75061 10.32242 11.16008 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.005579 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.536468 B = 5017.169406 C = 6175.788857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.266 4.266 5 H 0.065 0.935 6 C 0.013 3.987 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.692 5.692 17 C 0.553 3.447 18 O -0.555 6.555 19 C -0.186 4.186 20 C -0.018 4.018 21 C -0.185 4.185 22 C 0.141 3.859 23 C -0.106 4.106 24 N -0.487 5.487 25 C 0.144 3.856 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.255 0.745 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.410 0.590 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.572 2.216 3.067 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.395 4.395 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.343 5.343 17 C 0.339 3.661 18 O -0.436 6.436 19 C -0.191 4.191 20 C -0.044 4.044 21 C -0.204 4.204 22 C 0.003 3.997 23 C -0.163 4.163 24 N -0.196 5.196 25 C -0.014 4.014 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.248 0.752 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.338 2.313 2.986 13.862 hybrid contribution 0.047 0.463 -0.254 0.531 sum -13.291 2.777 2.731 13.850 Atomic orbital electron populations 1.22455 1.00072 0.99057 1.01481 1.20757 0.91610 0.87432 0.98774 1.43901 1.75995 1.08299 1.02261 1.19107 1.08724 1.18262 0.93417 0.91735 1.25153 0.94478 1.01306 0.97787 1.70002 1.07829 1.35815 1.39573 0.86424 0.77005 0.81980 0.82183 1.21224 1.21767 1.20283 1.20507 0.88847 0.99619 0.84204 0.88186 1.22017 1.01095 0.97953 0.99261 1.22238 0.87933 0.96363 0.95881 1.45927 1.10757 1.58518 1.19061 1.18020 0.82700 0.79529 0.85869 1.90722 1.83364 1.51197 1.18275 1.21131 0.96259 1.04886 0.96860 1.21695 0.90740 0.92039 0.99948 1.21912 1.00612 1.02095 0.95817 1.21529 0.92979 0.93434 0.91713 1.20759 0.94482 1.00241 1.00836 1.67575 1.00007 1.14632 1.37394 1.23165 0.97607 0.90151 0.90512 0.93436 0.94829 0.93067 0.94053 0.94489 0.93516 0.94814 0.95112 0.90236 0.92691 0.92564 0.75167 0.83698 0.84379 0.90179 0.90207 0.90611 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.86 37.15 0.37 -2.72 16 2 C 0.14 2.81 5.67 -4.04 -0.02 2.78 16 3 N -0.58 -12.86 1.85 -165.67 -0.31 -13.17 16 4 C -0.27 -6.48 9.26 -15.06 -0.14 -6.61 16 5 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 6 C 0.01 0.33 4.85 -17.43 -0.08 0.25 16 7 N -0.89 -23.30 10.60 55.49 0.59 -22.72 16 8 Si 0.89 20.20 29.59 -169.99 -5.03 15.17 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.18 3.69 1.92 -67.93 -0.13 3.56 16 13 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 14 C -0.14 -2.90 9.05 37.15 0.34 -2.56 16 15 C 0.10 1.92 4.34 -4.05 -0.02 1.90 16 16 N -0.69 -12.54 3.94 -61.25 -0.24 -12.79 16 17 C 0.55 9.91 7.54 -12.33 -0.09 9.81 16 18 O -0.56 -11.28 16.42 5.32 0.09 -11.20 16 19 C -0.19 -2.89 5.89 -104.82 -0.62 -3.50 16 20 C -0.02 -0.24 9.72 -38.87 -0.38 -0.61 16 21 C -0.18 -2.04 9.72 -39.50 -0.38 -2.42 16 22 C 0.14 1.70 6.78 -82.51 -0.56 1.15 16 23 C -0.11 -0.89 10.16 36.00 0.37 -0.52 16 24 N -0.49 -7.21 10.25 -9.14 -0.09 -7.31 16 25 C 0.14 2.20 10.71 -17.13 -0.18 2.02 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.95 4.99 -51.93 -0.26 0.69 16 29 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.04 0.71 6.45 -51.93 -0.33 0.38 16 31 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.57 6.67 -51.93 -0.35 0.23 16 34 H 0.08 1.82 7.39 -51.93 -0.38 1.44 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.09 7.05 -51.92 -0.37 0.72 16 37 H 0.41 7.54 5.96 -40.82 -0.24 7.30 16 38 H 0.15 1.80 7.74 -52.49 -0.41 1.40 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 43 H 0.17 2.50 6.42 -52.49 -0.34 2.16 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -28.15 347.44 -7.64 -35.79 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.34 Total: 8.46 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.54 Total: 2.51 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.05 Total: -55.98 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.15 -7.64 -35.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151901246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.427 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds