Wall clock time and date at job start Tue Mar 31 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46507 * 109.47186 * 2 1 4 4 C 1.36933 * 120.00231 * 275.73731 * 3 2 1 5 5 H 1.08000 * 119.99735 * 33.26244 * 4 3 2 6 6 C 1.38806 * 120.00036 * 213.26603 * 4 3 2 7 7 N 1.31618 * 120.00378 * 17.26941 * 6 4 3 8 8 Si 1.86801 * 120.00040 * 197.27007 * 6 4 3 9 9 H 1.48500 * 109.47237 * 89.99659 * 8 6 4 10 10 H 1.48507 * 109.47310 * 210.00028 * 8 6 4 11 11 H 1.48502 * 109.47115 * 329.99820 * 8 6 4 12 12 C 1.46503 * 119.99648 * 95.73390 * 3 2 1 13 13 H 1.09005 * 109.46556 * 180.09394 * 12 3 2 14 14 C 1.52988 * 109.47211 * 60.09271 * 12 3 2 15 15 C 1.53001 * 109.47183 * 300.08743 * 12 3 2 16 16 N 1.46493 * 109.47495 * 305.00868 * 15 12 3 17 17 C 1.34776 * 120.00178 * 179.97438 * 16 15 12 18 18 O 1.21556 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.47844 * 120.00347 * 179.97438 * 17 16 15 20 20 C 1.40019 * 120.56323 * 180.02562 * 19 17 16 21 21 C 1.38350 * 118.28997 * 179.70768 * 20 19 17 22 22 C 1.38352 * 119.30677 * 0.27084 * 21 20 19 23 23 C 1.50691 * 119.46480 * 180.02562 * 22 21 20 24 24 N 1.31930 * 121.07543 * 0.02595 * 22 21 20 25 25 C 1.31694 * 121.88051 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47847 * 59.99782 * 1 2 3 27 27 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47302 * 299.99450 * 1 2 3 29 29 H 1.09001 * 109.47302 * 240.00550 * 2 1 3 30 30 H 1.09005 * 109.47676 * 120.00251 * 2 1 3 31 31 H 0.96997 * 120.00430 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47116 * 179.97438 * 14 12 3 33 33 H 1.09005 * 109.47461 * 299.99568 * 14 12 3 34 34 H 1.09000 * 109.47101 * 60.00009 * 14 12 3 35 35 H 1.08999 * 109.47371 * 185.00020 * 15 12 3 36 36 H 1.09009 * 109.46813 * 65.00325 * 15 12 3 37 37 H 0.97005 * 120.00204 * 359.97438 * 16 15 12 38 38 H 1.08000 * 120.85552 * 359.97438 * 20 19 17 39 39 H 1.08006 * 120.34844 * 180.25543 * 21 20 19 40 40 H 1.09001 * 109.47575 * 90.00230 * 23 22 21 41 41 H 1.09004 * 109.47532 * 210.00242 * 23 22 21 42 42 H 1.09001 * 109.47541 * 330.00313 * 23 22 21 43 43 H 1.08000 * 119.71584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1348 2.0663 -1.1799 5 1 1.4368 1.8811 -1.9830 6 6 3.1499 2.9988 -1.3438 7 7 4.1869 2.9920 -0.5334 8 14 3.0442 4.2634 -2.7146 9 1 2.3484 5.4768 -2.2160 10 1 4.4136 4.6259 -3.1604 11 1 2.2865 3.6927 -3.8572 12 6 2.3819 2.0296 1.2624 13 1 2.7188 3.0472 1.0644 14 6 3.5077 1.2414 1.9347 15 6 1.1630 2.0667 2.1864 16 7 0.0465 2.7171 1.4960 17 6 -1.1390 2.8626 2.1204 18 8 -1.2820 2.4538 3.2561 19 6 -2.2656 3.5195 1.4239 20 6 -3.5021 3.6774 2.0616 21 6 -4.5221 4.3043 1.3683 22 6 -4.2919 4.7459 0.0775 23 6 -5.4001 5.4298 -0.6807 24 7 -3.1178 4.5781 -0.5004 25 6 -2.1162 3.9876 0.1180 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.8961 3.6438 -0.6476 32 1 3.7786 1.7240 2.8739 33 1 3.1708 0.2238 2.1328 34 1 4.3761 1.2150 1.2765 35 1 1.4080 2.6267 3.0888 36 1 0.8802 1.0490 2.4558 37 1 0.1605 3.0430 0.5895 38 1 -3.6544 3.3228 3.0703 39 1 -5.4881 4.4473 1.8297 40 1 -5.3573 6.5034 -0.4974 41 1 -5.2826 5.2384 -1.7474 42 1 -6.3624 5.0422 -0.3460 43 1 -1.1699 3.8683 -0.3886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151901246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:18 Heat of formation + Delta-G solvation = -2.960860 kcal Electronic energy + Delta-G solvation = -24044.768253 eV Core-core repulsion = 20703.776651 eV Total energy + Delta-G solvation = -3340.991602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66739 -40.21551 -38.56827 -35.38375 -34.14523 -33.70678 -33.37840 -32.60905 -29.98298 -29.20274 -26.78268 -25.78820 -24.84383 -23.69224 -23.23907 -21.47035 -21.02094 -19.15456 -18.51051 -17.89161 -16.97172 -16.64743 -16.50419 -16.39317 -15.87347 -15.77162 -15.22932 -15.16870 -14.39534 -14.32891 -14.18463 -13.97727 -13.82380 -13.50101 -13.30020 -13.16787 -13.12914 -12.98312 -12.79968 -12.72346 -12.56199 -12.40859 -12.05513 -11.87773 -11.36489 -11.24837 -11.16822 -10.96852 -10.48399 -10.43163 -10.15750 -9.85062 -8.53432 -7.82514 -5.32480 -0.40045 0.18424 1.48926 1.54139 1.58846 1.81582 2.24123 2.54153 2.79060 3.19229 3.31933 3.64007 3.70912 3.78220 3.83497 4.00287 4.23503 4.32837 4.44932 4.55749 4.61912 4.67584 4.72565 4.80599 4.81266 4.86764 4.93539 4.96026 5.05533 5.06239 5.09810 5.17068 5.22112 5.31517 5.45720 5.57466 5.61555 5.69923 5.76236 5.88245 6.49610 6.59274 6.84908 7.16734 7.25023 7.92504 8.44697 9.21307 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.005579 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.536468 B = 5017.169406 C = 6175.788857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.261 4.261 5 H 0.060 0.940 6 C -0.028 4.028 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.285 1.285 10 H -0.301 1.301 11 H -0.274 1.274 12 C 0.181 3.819 13 H 0.070 0.930 14 C -0.135 4.135 15 C 0.114 3.886 16 N -0.693 5.693 17 C 0.556 3.444 18 O -0.582 6.582 19 C -0.205 4.205 20 C -0.022 4.022 21 C -0.169 4.169 22 C 0.137 3.863 23 C -0.104 4.104 24 N -0.511 5.511 25 C 0.136 3.864 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.249 0.751 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.409 0.591 38 H 0.153 0.847 39 H 0.181 0.819 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 2.497 3.282 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.078 0.922 6 C -0.225 4.225 7 N -0.556 5.556 8 Si 0.776 3.224 9 H -0.212 1.212 10 H -0.228 1.228 11 H -0.199 1.199 12 C 0.074 3.926 13 H 0.089 0.911 14 C -0.194 4.194 15 C -0.012 4.012 16 N -0.343 5.343 17 C 0.344 3.656 18 O -0.465 6.465 19 C -0.211 4.211 20 C -0.048 4.048 21 C -0.188 4.188 22 C 0.000 4.000 23 C -0.161 4.161 24 N -0.221 5.221 25 C -0.022 4.022 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.246 0.754 38 H 0.170 0.830 39 H 0.199 0.801 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.084 2.584 3.194 16.600 hybrid contribution 0.789 0.372 -0.331 0.933 sum -15.295 2.957 2.862 15.839 Atomic orbital electron populations 1.22270 0.98317 1.00264 1.00730 1.20825 0.92807 0.86226 0.98727 1.44012 1.76124 1.09182 1.02011 1.19226 1.07952 1.18043 0.93945 0.92202 1.25652 0.94502 1.02839 0.99556 1.70124 1.08307 1.36270 1.40928 0.85601 0.76153 0.80263 0.80365 1.21214 1.22796 1.19923 1.20362 0.89883 0.98050 0.84286 0.91148 1.21879 0.99524 0.98806 0.99204 1.21982 0.87366 0.96491 0.95338 1.45899 1.10881 1.58563 1.18921 1.18340 0.82920 0.78865 0.85494 1.90695 1.83837 1.52550 1.19408 1.20957 0.96432 1.06522 0.97154 1.21916 0.90389 0.92113 1.00402 1.22324 1.01555 0.99859 0.95061 1.22265 0.92776 0.92454 0.92496 1.20902 0.94307 1.00815 1.00100 1.67610 1.00995 1.15353 1.38149 1.23008 0.97773 0.90918 0.90548 0.94286 0.92600 0.93629 0.94993 0.93583 0.94210 0.93101 0.93795 0.93239 0.92420 0.92589 0.75369 0.82976 0.80143 0.88746 0.90728 0.87550 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 9.86 71.98 0.71 -4.77 16 2 C 0.14 5.51 5.67 86.37 0.49 6.00 16 3 N -0.59 -26.27 1.85 -678.04 -1.25 -27.53 16 4 C -0.26 -12.89 9.26 84.03 0.78 -12.11 16 5 H 0.06 2.98 7.89 -2.91 -0.02 2.95 16 6 C -0.03 -1.41 4.85 84.86 0.41 -1.00 16 7 N -0.91 -48.90 10.60 21.65 0.23 -48.67 16 8 Si 0.95 42.24 29.59 68.60 2.03 44.27 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.18 7.71 1.92 44.99 0.09 7.80 16 13 H 0.07 3.46 6.04 -2.38 -0.01 3.44 16 14 C -0.13 -5.43 9.05 71.98 0.65 -4.78 16 15 C 0.11 4.31 4.34 86.38 0.37 4.69 16 16 N -0.69 -25.35 3.94 -465.98 -1.84 -27.19 16 17 C 0.56 19.92 7.54 86.79 0.65 20.57 16 18 O -0.58 -23.51 16.42 -3.89 -0.06 -23.58 16 19 C -0.21 -6.27 5.89 -19.99 -0.12 -6.39 16 20 C -0.02 -0.54 9.72 22.73 0.22 -0.32 16 21 C -0.17 -3.15 9.72 22.32 0.22 -2.93 16 22 C 0.14 2.95 6.78 42.57 0.29 3.24 16 23 C -0.10 -1.37 10.16 71.23 0.72 -0.64 16 24 N -0.51 -14.61 10.25 -182.82 -1.87 -16.48 16 25 C 0.14 4.15 10.71 85.02 0.91 5.06 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.65 4.99 -2.39 -0.01 1.63 16 29 H 0.03 1.31 8.09 -2.39 -0.02 1.29 16 30 H 0.05 1.72 6.45 -2.38 -0.02 1.71 16 31 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.04 1.61 6.67 -2.38 -0.02 1.60 16 34 H 0.05 2.29 7.39 -2.39 -0.02 2.27 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.13 7.05 -2.38 -0.02 2.12 16 37 H 0.41 15.37 5.96 -92.70 -0.55 14.82 16 38 H 0.15 3.49 7.74 -2.91 -0.02 3.47 16 39 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 0.77 8.07 -2.39 -0.02 0.75 16 43 H 0.15 4.84 6.42 -2.91 -0.02 4.83 16 Total: -1.00 -60.97 347.44 4.09 -56.88 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.46 Total: 27.89 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.40 Total: 14.41 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -4.73 Total: -119.87 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -60.97 4.09 -56.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151901246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.915 kcal (2) G-P(sol) polarization free energy of solvation -60.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds