Wall clock time and date at job start Tue Mar 31 2020 06:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47209 * 2 1 4 4 C 1.36926 * 120.00134 * 275.73168 * 3 2 1 5 5 H 1.08006 * 120.00051 * 33.28000 * 4 3 2 6 6 C 1.38813 * 120.00199 * 213.27024 * 4 3 2 7 7 N 1.31620 * 119.99859 * 17.27234 * 6 4 3 8 8 Si 1.86807 * 120.00267 * 197.26451 * 6 4 3 9 9 H 1.48494 * 109.46627 * 60.00454 * 8 6 4 10 10 H 1.48498 * 109.46855 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47091 * 300.00522 * 8 6 4 12 12 C 1.46504 * 119.99759 * 95.73552 * 3 2 1 13 13 H 1.08997 * 109.47353 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47076 * 60.08204 * 12 3 2 15 15 C 1.52996 * 109.47071 * 300.08643 * 12 3 2 16 16 N 1.46501 * 109.46704 * 304.99646 * 15 12 3 17 17 C 1.34779 * 119.99930 * 180.02562 * 16 15 12 18 18 O 1.21521 * 120.00151 * 359.97438 * 17 16 15 19 19 C 1.48163 * 120.00327 * 180.02562 * 17 16 15 20 20 C 1.39312 * 119.72702 * 179.72576 * 19 17 16 21 21 C 1.38594 * 119.06110 * 179.71158 * 20 19 17 22 22 C 1.38630 * 118.48180 * 0.55121 * 21 20 19 23 23 C 1.38553 * 119.35777 * 359.73379 * 22 21 20 24 24 C 1.50698 * 119.54873 * 179.97438 * 23 22 21 25 25 N 1.31522 * 120.90101 * 359.97280 * 23 22 21 26 26 H 1.09001 * 109.46906 * 59.99476 * 1 2 3 27 27 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46504 * 299.99741 * 1 2 3 29 29 H 1.09007 * 109.46865 * 239.99915 * 2 1 3 30 30 H 1.09001 * 109.46906 * 120.00524 * 2 1 3 31 31 H 0.97003 * 120.00010 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47322 * 59.99912 * 14 12 3 33 33 H 1.08999 * 109.47223 * 179.97438 * 14 12 3 34 34 H 1.09001 * 109.47271 * 300.00201 * 14 12 3 35 35 H 1.08999 * 109.47100 * 185.00369 * 15 12 3 36 36 H 1.08993 * 109.47525 * 64.99907 * 15 12 3 37 37 H 0.97002 * 120.00599 * 0.02562 * 16 15 12 38 38 H 1.07998 * 120.47008 * 359.97438 * 20 19 17 39 39 H 1.07994 * 120.75870 * 180.28524 * 21 20 19 40 40 H 1.08007 * 120.32056 * 179.74953 * 22 21 20 41 41 H 1.08999 * 109.46842 * 269.97270 * 24 23 22 42 42 H 1.09003 * 109.47278 * 29.97529 * 24 23 22 43 43 H 1.09001 * 109.47416 * 149.97694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0661 -1.1799 5 1 1.4369 1.8811 -1.9830 6 6 3.1502 2.9985 -1.3438 7 7 4.1872 2.9916 -0.5333 8 14 3.0447 4.2630 -2.7148 9 1 1.8245 5.0896 -2.5329 10 1 4.2451 5.1364 -2.6760 11 1 2.9809 3.5679 -4.0255 12 6 2.3821 2.0295 1.2624 13 1 2.7201 3.0466 1.0644 14 6 3.5078 1.2410 1.9349 15 6 1.1632 2.0666 2.1863 16 7 0.0469 2.7174 1.4959 17 6 -1.1384 2.8640 2.1205 18 8 -1.2813 2.4560 3.2563 19 6 -2.2676 3.5215 1.4221 20 6 -3.4919 3.6649 2.0712 21 6 -4.5370 4.2875 1.4072 22 6 -4.3245 4.7349 0.1123 23 6 -3.0823 4.5533 -0.4738 24 6 -2.8468 5.0374 -1.8813 25 7 -2.1059 3.9642 0.1815 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.8965 3.6434 -0.6476 32 1 4.3762 1.2144 1.2767 33 1 3.7787 1.7236 2.8739 34 1 3.1707 0.2235 2.1328 35 1 1.4082 2.6267 3.0888 36 1 0.8802 1.0491 2.4558 37 1 0.1607 3.0427 0.5892 38 1 -3.6236 3.2999 3.0790 39 1 -5.4963 4.4173 1.8859 40 1 -5.1196 5.2205 -0.4341 41 1 -3.0947 4.2428 -2.5851 42 1 -3.4761 5.9056 -2.0771 43 1 -1.7991 5.3139 -2.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151931533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:09 Heat of formation + Delta-G solvation = 14.465482 kcal Electronic energy + Delta-G solvation = -24245.927076 eV Core-core repulsion = 20905.691137 eV Total energy + Delta-G solvation = -3340.235939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48132 -38.73287 -36.83372 -33.73065 -32.95943 -32.46588 -31.79884 -30.88062 -28.13402 -27.75419 -25.98358 -23.93789 -23.77848 -22.12596 -21.60340 -20.11784 -19.21758 -17.62626 -16.79469 -16.48849 -15.94272 -15.16560 -15.04456 -14.80662 -14.41327 -14.23455 -13.80639 -13.59782 -13.19107 -13.00840 -12.64639 -12.47759 -12.26029 -12.22494 -11.97355 -11.93760 -11.77140 -11.45559 -11.00725 -10.91680 -10.73624 -10.64727 -10.27543 -10.03682 -9.94671 -9.93273 -9.58793 -9.40230 -9.27640 -8.98538 -8.45158 -8.32373 -6.61266 -5.82199 -3.30072 0.73701 1.21238 3.03284 3.37438 3.43503 3.45105 3.62500 4.01036 4.22266 4.48252 4.62841 4.91797 4.97428 5.07211 5.32458 5.42733 5.47154 5.54375 5.57152 5.61535 5.92529 5.97714 6.06678 6.10471 6.12735 6.22521 6.30172 6.42146 6.51957 6.58573 6.60564 6.66615 6.73070 6.87144 6.96643 7.08862 7.22314 7.52285 7.61277 7.82585 7.83983 8.25684 8.49309 8.73563 9.22011 9.83444 10.40335 11.24642 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.006291 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.562261 B = 4449.849645 C = 5697.576039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.257 4.257 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.143 4.143 15 C 0.098 3.902 16 N -0.675 5.675 17 C 0.557 3.443 18 O -0.555 6.555 19 C 0.094 3.906 20 C -0.126 4.126 21 C -0.082 4.082 22 C -0.159 4.159 23 C 0.128 3.872 24 C -0.106 4.106 25 N -0.449 5.449 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.423 0.577 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 2.879 1.574 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.303 5.303 4 C -0.387 4.387 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.210 1.210 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.027 4.027 16 N -0.325 5.325 17 C 0.341 3.659 18 O -0.435 6.435 19 C -0.045 4.045 20 C -0.147 4.147 21 C -0.108 4.108 22 C -0.179 4.179 23 C -0.012 4.012 24 C -0.164 4.164 25 N -0.162 5.162 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.262 0.738 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.979 2.558 1.958 13.373 hybrid contribution -0.853 0.916 -0.708 1.438 sum -13.832 3.474 1.251 14.316 Atomic orbital electron populations 1.22445 1.00076 0.98798 1.01598 1.20750 0.91621 0.87440 0.98691 1.43849 1.75911 1.08246 1.02255 1.19024 1.08307 1.18104 0.93270 0.91962 1.25124 0.94543 1.01317 0.97875 1.69996 1.07883 1.36026 1.39701 0.86471 0.77003 0.81746 0.82167 1.20733 1.21827 1.20969 1.20500 0.88797 0.99641 0.84209 0.88186 1.22017 1.01106 0.97919 0.99228 1.22276 0.88169 0.96348 0.95954 1.45907 1.10115 1.56883 1.19592 1.17909 0.82714 0.79776 0.85515 1.90726 1.83248 1.51517 1.17990 1.21355 0.94338 0.97860 0.90898 1.22095 0.92550 0.98242 1.01775 1.21558 0.99092 0.95725 0.94389 1.22139 0.98253 1.01400 0.96079 1.21354 0.89008 0.94036 0.96842 1.20756 1.04245 1.01074 0.90288 1.67516 1.33321 1.08098 1.07219 0.93399 0.94983 0.93148 0.94097 0.94524 0.93595 0.90246 0.94843 0.95147 0.92716 0.92586 0.73834 0.83668 0.84363 0.84589 0.90154 0.90795 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 9.87 37.16 0.37 -2.88 16 2 C 0.14 2.95 5.67 -4.04 -0.02 2.92 16 3 N -0.58 -13.45 1.85 -165.66 -0.31 -13.76 16 4 C -0.26 -6.57 9.26 -15.06 -0.14 -6.71 16 5 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 6 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 7 N -0.89 -24.09 10.60 55.49 0.59 -23.51 16 8 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.18 3.89 1.92 -67.93 -0.13 3.76 16 13 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 14 C -0.14 -2.98 9.05 37.16 0.34 -2.64 16 15 C 0.10 1.97 4.34 -4.04 -0.02 1.95 16 16 N -0.68 -13.51 3.98 -61.15 -0.24 -13.75 16 17 C 0.56 10.81 7.58 -12.18 -0.09 10.72 16 18 O -0.56 -11.70 16.32 5.35 0.09 -11.62 16 19 C 0.09 1.60 6.75 -83.01 -0.56 1.04 16 20 C -0.13 -1.74 9.63 -39.05 -0.38 -2.11 16 21 C -0.08 -0.87 10.17 -39.31 -0.40 -1.27 16 22 C -0.16 -1.68 9.75 -39.32 -0.38 -2.07 16 23 C 0.13 1.71 6.78 -82.61 -0.56 1.15 16 24 C -0.11 -1.16 10.17 36.00 0.37 -0.79 16 25 N -0.45 -7.52 9.45 -6.06 -0.06 -7.58 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.00 4.99 -51.93 -0.26 0.74 16 29 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.04 0.73 6.45 -51.93 -0.33 0.40 16 31 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.08 1.87 7.39 -51.93 -0.38 1.48 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.58 6.67 -51.93 -0.35 0.24 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.14 7.05 -51.93 -0.37 0.77 16 37 H 0.42 8.99 7.22 -40.82 -0.29 8.70 16 38 H 0.15 1.90 7.64 -52.49 -0.40 1.50 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -28.87 349.68 -7.86 -36.73 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.47 Total: 9.18 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.70 Total: 3.27 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.02 Total: -58.59 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.87 -7.86 -36.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151931533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.192 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds