Wall clock time and date at job start Tue Mar 31 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47209 * 2 1 4 4 C 1.36926 * 120.00134 * 275.73168 * 3 2 1 5 5 H 1.08006 * 120.00051 * 33.28000 * 4 3 2 6 6 C 1.38813 * 120.00199 * 213.27024 * 4 3 2 7 7 N 1.31620 * 119.99859 * 17.27234 * 6 4 3 8 8 Si 1.86807 * 120.00267 * 197.26451 * 6 4 3 9 9 H 1.48494 * 109.46627 * 60.00454 * 8 6 4 10 10 H 1.48498 * 109.46855 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47091 * 300.00522 * 8 6 4 12 12 C 1.46504 * 119.99759 * 95.73552 * 3 2 1 13 13 H 1.08997 * 109.47353 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47076 * 60.08204 * 12 3 2 15 15 C 1.52996 * 109.47071 * 300.08643 * 12 3 2 16 16 N 1.46501 * 109.46704 * 304.99646 * 15 12 3 17 17 C 1.34779 * 119.99930 * 180.02562 * 16 15 12 18 18 O 1.21521 * 120.00151 * 359.97438 * 17 16 15 19 19 C 1.48163 * 120.00327 * 180.02562 * 17 16 15 20 20 C 1.39312 * 119.72702 * 179.72576 * 19 17 16 21 21 C 1.38594 * 119.06110 * 179.71158 * 20 19 17 22 22 C 1.38630 * 118.48180 * 0.55121 * 21 20 19 23 23 C 1.38553 * 119.35777 * 359.73379 * 22 21 20 24 24 C 1.50698 * 119.54873 * 179.97438 * 23 22 21 25 25 N 1.31522 * 120.90101 * 359.97280 * 23 22 21 26 26 H 1.09001 * 109.46906 * 59.99476 * 1 2 3 27 27 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46504 * 299.99741 * 1 2 3 29 29 H 1.09007 * 109.46865 * 239.99915 * 2 1 3 30 30 H 1.09001 * 109.46906 * 120.00524 * 2 1 3 31 31 H 0.97003 * 120.00010 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47322 * 59.99912 * 14 12 3 33 33 H 1.08999 * 109.47223 * 179.97438 * 14 12 3 34 34 H 1.09001 * 109.47271 * 300.00201 * 14 12 3 35 35 H 1.08999 * 109.47100 * 185.00369 * 15 12 3 36 36 H 1.08993 * 109.47525 * 64.99907 * 15 12 3 37 37 H 0.97002 * 120.00599 * 0.02562 * 16 15 12 38 38 H 1.07998 * 120.47008 * 359.97438 * 20 19 17 39 39 H 1.07994 * 120.75870 * 180.28524 * 21 20 19 40 40 H 1.08007 * 120.32056 * 179.74953 * 22 21 20 41 41 H 1.08999 * 109.46842 * 269.97270 * 24 23 22 42 42 H 1.09003 * 109.47278 * 29.97529 * 24 23 22 43 43 H 1.09001 * 109.47416 * 149.97694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0661 -1.1799 5 1 1.4369 1.8811 -1.9830 6 6 3.1502 2.9985 -1.3438 7 7 4.1872 2.9916 -0.5333 8 14 3.0447 4.2630 -2.7148 9 1 1.8245 5.0896 -2.5329 10 1 4.2451 5.1364 -2.6760 11 1 2.9809 3.5679 -4.0255 12 6 2.3821 2.0295 1.2624 13 1 2.7201 3.0466 1.0644 14 6 3.5078 1.2410 1.9349 15 6 1.1632 2.0666 2.1863 16 7 0.0469 2.7174 1.4959 17 6 -1.1384 2.8640 2.1205 18 8 -1.2813 2.4560 3.2563 19 6 -2.2676 3.5215 1.4221 20 6 -3.4919 3.6649 2.0712 21 6 -4.5370 4.2875 1.4072 22 6 -4.3245 4.7349 0.1123 23 6 -3.0823 4.5533 -0.4738 24 6 -2.8468 5.0374 -1.8813 25 7 -2.1059 3.9642 0.1815 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.8965 3.6434 -0.6476 32 1 4.3762 1.2144 1.2767 33 1 3.7787 1.7236 2.8739 34 1 3.1707 0.2235 2.1328 35 1 1.4082 2.6267 3.0888 36 1 0.8802 1.0491 2.4558 37 1 0.1607 3.0427 0.5892 38 1 -3.6236 3.2999 3.0790 39 1 -5.4963 4.4173 1.8859 40 1 -5.1196 5.2205 -0.4341 41 1 -3.0947 4.2428 -2.5851 42 1 -3.4761 5.9056 -2.0771 43 1 -1.7991 5.3139 -2.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151931533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:08 Heat of formation + Delta-G solvation = -2.261658 kcal Electronic energy + Delta-G solvation = -24246.652419 eV Core-core repulsion = 20905.691137 eV Total energy + Delta-G solvation = -3340.961282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62804 -40.14836 -38.56367 -35.33807 -33.94646 -33.79475 -33.49882 -32.50348 -29.94878 -28.75152 -27.43639 -25.79814 -25.06317 -23.40385 -23.00096 -21.50829 -21.00396 -19.09793 -18.52274 -17.62214 -17.08193 -16.65220 -16.54100 -16.44816 -15.94083 -15.63760 -15.12881 -15.10641 -14.52257 -14.34624 -13.99894 -13.99495 -13.81987 -13.50799 -13.29806 -13.11653 -13.09821 -12.85400 -12.78623 -12.73779 -12.53396 -12.41520 -12.09983 -11.88087 -11.37948 -11.33390 -11.18697 -10.91179 -10.44410 -10.41420 -10.10604 -9.82276 -8.52381 -7.81216 -5.30605 -0.32918 0.27073 1.49728 1.52509 1.57792 1.74338 2.24302 2.55618 2.86509 3.12214 3.33116 3.64351 3.76249 3.90581 4.05897 4.11393 4.22413 4.42827 4.48899 4.54379 4.61694 4.64900 4.75577 4.78991 4.80208 4.84951 4.92297 4.95626 5.04039 5.12785 5.13919 5.19944 5.21454 5.29458 5.47908 5.56533 5.68483 5.69273 5.75883 5.87408 6.49758 6.56708 6.90792 7.19944 7.25813 7.93222 8.45225 9.22638 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.006291 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.562261 B = 4449.849645 C = 5697.576039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.055 0.945 6 C -0.031 4.031 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.281 1.281 12 C 0.182 3.818 13 H 0.068 0.932 14 C -0.133 4.133 15 C 0.110 3.890 16 N -0.681 5.681 17 C 0.556 3.444 18 O -0.580 6.580 19 C 0.058 3.942 20 C -0.128 4.128 21 C -0.071 4.071 22 C -0.137 4.137 23 C 0.107 3.893 24 C -0.104 4.104 25 N -0.486 5.486 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.248 0.752 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.416 0.584 38 H 0.147 0.853 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.934 3.489 1.219 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.073 0.927 6 C -0.229 4.229 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.225 1.225 11 H -0.207 1.207 12 C 0.074 3.926 13 H 0.086 0.914 14 C -0.192 4.192 15 C -0.016 4.016 16 N -0.329 5.329 17 C 0.341 3.659 18 O -0.461 6.461 19 C -0.079 4.079 20 C -0.150 4.150 21 C -0.096 4.096 22 C -0.157 4.157 23 C -0.033 4.033 24 C -0.161 4.161 25 N -0.199 5.199 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.165 0.835 39 H 0.200 0.800 40 H 0.199 0.801 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.989 3.151 1.610 16.376 hybrid contribution -0.030 0.734 -0.626 0.965 sum -16.019 3.885 0.984 16.513 Atomic orbital electron populations 1.22247 0.98536 1.00046 1.00456 1.20824 0.92641 0.86235 0.98819 1.43951 1.76080 1.09154 1.01978 1.19128 1.07657 1.18237 0.93818 0.92712 1.25677 0.94494 1.02849 0.99859 1.70126 1.08289 1.36392 1.41042 0.85618 0.76550 0.79776 0.80126 1.20379 1.22471 1.20683 1.20354 0.89879 0.98015 0.84326 0.91405 1.21866 0.99411 0.98776 0.99184 1.22042 0.87603 0.96482 0.95427 1.45892 1.10536 1.57254 1.19211 1.18372 0.83040 0.79138 0.85302 1.90686 1.83759 1.52700 1.18977 1.21048 0.94546 1.00544 0.91810 1.22256 0.92332 0.98404 1.01962 1.22053 0.99674 0.93651 0.94243 1.22622 0.97885 0.99224 0.95923 1.21907 0.89757 0.93937 0.97713 1.20832 1.03445 1.02622 0.89232 1.67394 1.35473 1.09518 1.07553 0.94734 0.92455 0.94003 0.94846 0.93407 0.94258 0.93152 0.93043 0.93710 0.92419 0.92532 0.74682 0.83550 0.79969 0.80092 0.89479 0.87246 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 9.87 71.98 0.71 -5.09 16 2 C 0.14 5.84 5.67 86.38 0.49 6.33 16 3 N -0.59 -27.79 1.85 -678.03 -1.25 -29.04 16 4 C -0.26 -13.45 9.26 84.04 0.78 -12.67 16 5 H 0.06 2.90 7.89 -2.91 -0.02 2.87 16 6 C -0.03 -1.67 4.85 84.86 0.41 -1.26 16 7 N -0.91 -50.68 10.60 21.65 0.23 -50.45 16 8 Si 0.95 43.60 29.59 68.60 2.03 45.63 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.18 8.19 1.92 44.99 0.09 8.28 16 13 H 0.07 3.54 6.03 -2.39 -0.01 3.52 16 14 C -0.13 -5.57 9.05 71.98 0.65 -4.92 16 15 C 0.11 4.50 4.34 86.38 0.37 4.88 16 16 N -0.68 -28.01 3.98 -465.67 -1.85 -29.86 16 17 C 0.56 22.05 7.58 86.88 0.66 22.71 16 18 O -0.58 -24.84 16.32 -3.78 -0.06 -24.90 16 19 C 0.06 1.96 6.75 41.91 0.28 2.24 16 20 C -0.13 -3.35 9.63 22.61 0.22 -3.13 16 21 C -0.07 -1.23 10.17 22.45 0.23 -1.00 16 22 C -0.14 -2.32 9.75 22.44 0.22 -2.10 16 23 C 0.11 2.66 6.78 42.68 0.29 2.95 16 24 C -0.10 -2.06 10.17 71.24 0.72 -1.33 16 25 N -0.49 -16.25 9.45 -173.09 -1.64 -17.89 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.65 4.99 -2.39 -0.01 1.64 16 29 H 0.03 1.43 8.09 -2.38 -0.02 1.41 16 30 H 0.05 1.87 6.45 -2.39 -0.02 1.86 16 31 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 32 H 0.05 2.40 7.39 -2.39 -0.02 2.38 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.70 6.67 -2.39 -0.02 1.69 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 2.30 7.05 -2.39 -0.02 2.28 16 37 H 0.42 18.39 7.22 -92.71 -0.67 17.72 16 38 H 0.15 3.68 7.64 -2.91 -0.02 3.65 16 39 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 1.33 8.08 -2.39 -0.02 1.31 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -64.99 349.68 3.92 -61.07 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.34 Total: 29.56 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.12 Total: 15.88 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -4.51 Total: -127.24 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.06 Total: -24.90 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.99 3.92 -61.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151931533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.809 kcal (2) G-P(sol) polarization free energy of solvation -64.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds