Wall clock time and date at job start Tue Mar 31 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47235 * 2 1 4 4 C 1.46498 * 120.00184 * 270.00247 * 3 2 1 5 5 C 1.50705 * 109.46994 * 269.99731 * 4 3 2 6 6 O 1.21281 * 119.99887 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99751 * 179.97438 * 5 4 3 8 8 C 1.46507 * 119.99765 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46854 * 180.02562 * 8 7 5 10 10 N 1.46507 * 109.46854 * 179.97438 * 9 8 7 11 11 C 1.36937 * 119.99614 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00280 * 0.02562 * 11 10 9 13 13 C 1.38813 * 119.99744 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99757 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00159 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47139 * 89.99719 * 15 13 11 17 17 H 1.48499 * 109.47180 * 209.99449 * 15 13 11 18 18 H 1.48495 * 109.47316 * 329.99614 * 15 13 11 19 19 C 1.39678 * 120.00138 * 89.99819 * 3 2 1 20 20 C 1.38915 * 120.06984 * 0.02562 * 19 3 2 21 21 C 1.38104 * 119.92359 * 179.97438 * 20 19 3 22 22 C 1.38288 * 120.07208 * 359.97438 * 21 20 19 23 23 C 1.38290 * 120.15288 * 0.02562 * 22 21 20 24 24 C 1.38100 * 120.07105 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47300 * 300.00060 * 1 2 3 26 26 H 1.09004 * 109.47321 * 60.00058 * 1 2 3 27 27 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47159 * 240.00366 * 2 1 3 29 29 H 1.09004 * 109.47321 * 119.99942 * 2 1 3 30 30 H 1.08995 * 109.47144 * 29.99687 * 4 3 2 31 31 H 1.09000 * 109.47505 * 149.99538 * 4 3 2 32 32 H 0.97000 * 120.00239 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.47138 * 300.00289 * 8 7 5 34 34 H 1.09003 * 109.46544 * 60.00347 * 8 7 5 35 35 H 1.08995 * 109.47438 * 300.00049 * 9 8 7 36 36 H 1.08995 * 109.47451 * 60.00474 * 9 8 7 37 37 H 0.97000 * 119.99996 * 0.02562 * 10 9 8 38 38 H 0.97001 * 119.99894 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.03739 * 359.69591 * 20 19 3 40 40 H 1.08001 * 119.96576 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.92458 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.96313 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.03349 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 8 4.4234 1.1559 -1.0214 7 7 4.1386 2.3772 -2.8515 8 6 5.5224 2.1475 -3.2741 9 6 5.7773 2.8687 -4.5992 10 7 7.1614 2.6395 -5.0215 11 6 7.6218 3.1914 -6.1871 12 1 6.9648 3.7959 -6.7949 13 6 8.9330 2.9738 -6.5876 14 7 9.7338 2.2374 -5.8466 15 14 9.5613 3.7271 -8.1772 16 1 10.1315 5.0694 -7.8974 17 1 10.6130 2.8537 -8.7571 18 1 8.4391 3.8571 -9.1409 19 6 2.2511 2.0397 1.2096 20 6 2.0205 1.3861 2.4135 21 6 2.2522 2.0398 3.6078 22 6 2.7137 3.3435 3.6059 23 6 2.9443 3.9970 2.4092 24 6 2.7146 3.3491 1.2115 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6878 -2.0283 31 1 2.0954 3.1411 -1.1384 32 1 3.5485 2.9202 -3.3974 33 1 6.2029 2.5323 -2.5146 34 1 5.6899 1.0783 -3.4039 35 1 5.0969 2.4843 -5.3589 36 1 5.6100 3.9379 -4.4690 37 1 7.7515 2.0969 -4.4755 38 1 10.6501 2.0857 -6.1262 39 1 1.6562 0.3694 2.4156 40 1 2.0728 1.5325 4.5441 41 1 2.8945 3.8523 4.5413 42 1 3.3051 5.0150 2.4114 43 1 2.8945 3.8603 0.2772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152121078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:12 Heat of formation + Delta-G solvation = 12.278126 kcal Electronic energy + Delta-G solvation = -22429.236803 eV Core-core repulsion = 19088.906013 eV Total energy + Delta-G solvation = -3340.330790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22338 -39.01938 -36.57824 -35.57676 -33.83638 -32.13631 -31.30037 -30.79120 -29.98383 -27.98176 -26.36721 -23.78524 -23.40631 -22.26194 -21.52507 -21.05455 -20.02816 -17.98518 -17.37561 -17.06439 -16.25826 -15.79215 -15.43916 -15.14152 -14.75884 -14.54671 -14.37439 -14.10645 -13.83246 -13.58754 -13.27029 -13.21987 -13.13227 -12.85061 -12.63618 -12.34083 -12.05692 -11.48094 -11.41188 -11.31424 -11.12594 -10.87746 -10.82915 -10.81604 -10.39580 -10.13123 -9.82980 -9.58238 -8.99988 -8.97817 -8.83877 -7.43265 -7.01223 -5.81063 -3.12019 1.38339 1.54851 2.68997 2.71990 3.37236 3.41173 3.46608 3.48182 3.86152 4.56079 4.60586 4.63742 4.77434 4.87232 4.93371 4.97603 5.06172 5.15744 5.18630 5.36957 5.39918 5.48458 5.49255 5.52499 5.58974 5.70115 5.76215 5.91020 5.93736 5.94535 6.13207 6.17665 6.41904 6.46947 6.57522 6.68416 6.71893 6.76944 7.03872 7.34939 7.61469 7.64160 8.31952 8.36706 9.47653 10.02449 10.37045 11.41520 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.002594 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.268647 B =10791.691405 C =11376.724758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.607 5.607 4 C 0.105 3.895 5 C 0.483 3.517 6 O -0.526 6.526 7 N -0.725 5.725 8 C 0.112 3.888 9 C 0.145 3.855 10 N -0.730 5.730 11 C -0.245 4.245 12 H 0.072 0.928 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.911 3.089 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.227 3.773 20 C -0.195 4.195 21 C -0.075 4.075 22 C -0.183 4.183 23 C -0.072 4.072 24 C -0.195 4.195 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.185 -0.550 15.566 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.316 5.316 4 C -0.023 4.023 5 C 0.266 3.734 6 O -0.402 6.402 7 N -0.378 5.378 8 C -0.012 4.012 9 C 0.017 3.983 10 N -0.375 5.375 11 C -0.376 4.376 12 H 0.090 0.910 13 C -0.209 4.209 14 N -0.579 5.579 15 Si 0.741 3.259 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 C 0.126 3.874 20 C -0.217 4.217 21 C -0.094 4.094 22 C -0.203 4.203 23 C -0.091 4.091 24 C -0.217 4.217 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.656 -1.078 15.747 26.797 hybrid contribution 0.494 0.486 -1.103 1.303 sum -21.161 -0.592 14.645 25.741 Atomic orbital electron populations 1.22244 0.96285 1.02006 1.02451 1.21383 0.93474 0.82012 1.03236 1.46060 1.70548 1.13283 1.01733 1.21288 0.93749 0.99859 0.87411 1.21430 0.90590 0.80283 0.81073 1.90731 1.57913 1.38153 1.53368 1.45979 1.14394 1.53471 1.23909 1.21555 0.81130 1.01106 0.97392 1.20751 0.89133 0.96675 0.91723 1.42201 1.06920 1.62119 1.26266 1.19189 0.95015 1.25198 0.98150 0.91029 1.24791 0.96494 1.00479 0.99096 1.69673 1.06562 1.42736 1.38897 0.86143 0.78410 0.78434 0.82887 1.21601 1.21673 1.20703 1.17768 0.92855 0.91263 0.85563 1.20644 1.09466 1.00512 0.91073 1.20862 0.96903 0.94542 0.97075 1.20882 1.05826 0.95798 0.97744 1.20877 0.96966 0.99253 0.91994 1.20656 1.08090 0.94280 0.98643 0.92250 0.92497 0.91715 0.90788 0.90461 0.87816 0.87769 0.76777 0.91414 0.91448 0.95847 0.95829 0.78012 0.93337 0.86155 0.86417 0.86675 0.86314 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.15 0.38 -0.77 16 2 C 0.12 1.09 5.88 -4.04 -0.02 1.06 16 3 N -0.61 -6.42 2.09 -173.12 -0.36 -6.79 16 4 C 0.10 0.98 5.64 -5.19 -0.03 0.95 16 5 C 0.48 6.57 7.90 -10.98 -0.09 6.48 16 6 O -0.53 -9.71 16.43 5.56 0.09 -9.61 16 7 N -0.72 -9.40 5.56 -60.29 -0.33 -9.74 16 8 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 9 C 0.15 2.82 6.37 -4.04 -0.03 2.80 16 10 N -0.73 -18.62 5.60 -59.91 -0.34 -18.96 16 11 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 12 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 14 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 15 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.23 2.67 6.55 -83.78 -0.55 2.12 16 20 C -0.19 -2.12 9.20 -39.38 -0.36 -2.48 16 21 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 22 C -0.18 -1.87 10.04 -39.54 -0.40 -2.27 16 23 C -0.07 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.19 -2.28 9.21 -39.38 -0.36 -2.64 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 29 H 0.08 0.70 6.20 -51.93 -0.32 0.38 16 30 H 0.10 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.10 0.79 6.20 -51.93 -0.32 0.47 16 32 H 0.40 3.84 8.47 -40.82 -0.35 3.49 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 39 H 0.12 1.12 6.15 -52.49 -0.32 0.80 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.27 6.14 -52.48 -0.32 0.94 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -34.66 360.28 -8.89 -43.56 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.56 Total: 9.12 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.52 Total: -2.62 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.31 Total: -63.15 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.66 -8.89 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152121078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.836 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds