Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47235 * 2 1 4 4 C 1.46498 * 120.00184 * 270.00247 * 3 2 1 5 5 C 1.50705 * 109.46994 * 269.99731 * 4 3 2 6 6 O 1.21281 * 119.99887 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99751 * 179.97438 * 5 4 3 8 8 C 1.46507 * 119.99765 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46854 * 180.02562 * 8 7 5 10 10 N 1.46507 * 109.46854 * 179.97438 * 9 8 7 11 11 C 1.36937 * 119.99614 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00280 * 0.02562 * 11 10 9 13 13 C 1.38813 * 119.99744 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99757 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00159 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47139 * 89.99719 * 15 13 11 17 17 H 1.48499 * 109.47180 * 209.99449 * 15 13 11 18 18 H 1.48495 * 109.47316 * 329.99614 * 15 13 11 19 19 C 1.39678 * 120.00138 * 89.99819 * 3 2 1 20 20 C 1.38915 * 120.06984 * 0.02562 * 19 3 2 21 21 C 1.38104 * 119.92359 * 179.97438 * 20 19 3 22 22 C 1.38288 * 120.07208 * 359.97438 * 21 20 19 23 23 C 1.38290 * 120.15288 * 0.02562 * 22 21 20 24 24 C 1.38100 * 120.07105 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47300 * 300.00060 * 1 2 3 26 26 H 1.09004 * 109.47321 * 60.00058 * 1 2 3 27 27 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47159 * 240.00366 * 2 1 3 29 29 H 1.09004 * 109.47321 * 119.99942 * 2 1 3 30 30 H 1.08995 * 109.47144 * 29.99687 * 4 3 2 31 31 H 1.09000 * 109.47505 * 149.99538 * 4 3 2 32 32 H 0.97000 * 120.00239 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.47138 * 300.00289 * 8 7 5 34 34 H 1.09003 * 109.46544 * 60.00347 * 8 7 5 35 35 H 1.08995 * 109.47438 * 300.00049 * 9 8 7 36 36 H 1.08995 * 109.47451 * 60.00474 * 9 8 7 37 37 H 0.97000 * 119.99996 * 0.02562 * 10 9 8 38 38 H 0.97001 * 119.99894 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.03739 * 359.69591 * 20 19 3 40 40 H 1.08001 * 119.96576 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.92458 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.96313 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.03349 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 8 4.4234 1.1559 -1.0214 7 7 4.1386 2.3772 -2.8515 8 6 5.5224 2.1475 -3.2741 9 6 5.7773 2.8687 -4.5992 10 7 7.1614 2.6395 -5.0215 11 6 7.6218 3.1914 -6.1871 12 1 6.9648 3.7959 -6.7949 13 6 8.9330 2.9738 -6.5876 14 7 9.7338 2.2374 -5.8466 15 14 9.5613 3.7271 -8.1772 16 1 10.1315 5.0694 -7.8974 17 1 10.6130 2.8537 -8.7571 18 1 8.4391 3.8571 -9.1409 19 6 2.2511 2.0397 1.2096 20 6 2.0205 1.3861 2.4135 21 6 2.2522 2.0398 3.6078 22 6 2.7137 3.3435 3.6059 23 6 2.9443 3.9970 2.4092 24 6 2.7146 3.3491 1.2115 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6878 -2.0283 31 1 2.0954 3.1411 -1.1384 32 1 3.5485 2.9202 -3.3974 33 1 6.2029 2.5323 -2.5146 34 1 5.6899 1.0783 -3.4039 35 1 5.0969 2.4843 -5.3589 36 1 5.6100 3.9379 -4.4690 37 1 7.7515 2.0969 -4.4755 38 1 10.6501 2.0857 -6.1262 39 1 1.6562 0.3694 2.4156 40 1 2.0728 1.5325 4.5441 41 1 2.8945 3.8523 4.5413 42 1 3.3051 5.0150 2.4114 43 1 2.8945 3.8603 0.2772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152121078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = -10.751057 kcal Electronic energy + Delta-G solvation = -22430.235423 eV Core-core repulsion = 19088.906013 eV Total energy + Delta-G solvation = -3341.329410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17112 -40.00168 -37.54937 -37.01702 -35.47059 -33.27329 -32.73922 -31.56745 -30.94754 -29.40214 -27.38762 -25.48143 -24.28411 -23.25999 -22.93839 -22.01456 -20.99320 -19.34826 -18.73794 -18.19829 -17.24881 -16.78383 -16.64248 -16.48484 -16.08565 -15.62692 -15.44482 -15.16419 -15.02729 -14.99929 -14.59392 -14.44732 -14.00819 -13.93518 -13.36371 -13.18529 -13.05404 -12.92298 -12.74470 -12.61009 -12.52298 -12.21046 -12.09463 -11.97315 -11.87657 -11.60731 -11.34829 -11.00255 -10.60506 -10.14095 -9.78238 -9.08304 -8.23054 -7.98135 -5.29902 0.57888 0.73802 1.47669 1.50239 1.58649 1.62018 1.87457 2.35515 2.58356 3.05038 3.36172 3.77255 3.90419 3.94211 4.02480 4.14194 4.17139 4.19117 4.26028 4.29695 4.40825 4.48353 4.56503 4.57817 4.65527 4.66636 4.81818 4.96921 5.01999 5.02956 5.12119 5.19609 5.36050 5.38387 5.40467 5.48134 5.64317 5.78343 6.00363 6.22537 6.25610 6.54256 6.62478 7.27100 7.28574 8.00471 8.23136 9.25651 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.002594 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.268647 B =10791.691405 C =11376.724758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 N -0.612 5.612 4 C 0.111 3.889 5 C 0.482 3.518 6 O -0.580 6.580 7 N -0.711 5.711 8 C 0.130 3.870 9 C 0.150 3.850 10 N -0.749 5.749 11 C -0.248 4.248 12 H 0.084 0.916 13 C -0.078 4.078 14 N -0.972 5.972 15 Si 0.980 3.020 16 H -0.286 1.286 17 H -0.297 1.297 18 H -0.264 1.264 19 C 0.209 3.791 20 C -0.208 4.208 21 C -0.081 4.081 22 C -0.192 4.192 23 C -0.084 4.084 24 C -0.215 4.215 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.419 0.581 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.373 0.627 38 H 0.252 0.748 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.408 0.380 15.116 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.321 5.321 4 C -0.017 4.017 5 C 0.268 3.732 6 O -0.459 6.459 7 N -0.365 5.365 8 C 0.005 3.995 9 C 0.023 3.977 10 N -0.392 5.392 11 C -0.379 4.379 12 H 0.102 0.898 13 C -0.271 4.271 14 N -0.623 5.623 15 Si 0.808 3.192 16 H -0.213 1.213 17 H -0.223 1.223 18 H -0.189 1.189 19 C 0.108 3.892 20 C -0.230 4.230 21 C -0.099 4.099 22 C -0.212 4.212 23 C -0.103 4.103 24 C -0.237 4.237 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.256 0.744 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.204 0.796 38 H 0.061 0.939 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.971 -0.112 15.281 28.428 hybrid contribution 1.126 0.189 -0.883 1.443 sum -22.845 0.077 14.398 27.004 Atomic orbital electron populations 1.22136 0.94288 1.02879 1.02500 1.21478 0.94986 0.81307 1.02675 1.46244 1.70299 1.13804 1.01745 1.21462 0.90953 1.01409 0.87839 1.22333 0.91984 0.78769 0.80098 1.90713 1.59688 1.40552 1.54903 1.45782 1.12848 1.53594 1.24253 1.21074 0.83247 0.99441 0.95771 1.20853 0.86382 0.97608 0.92840 1.42461 1.09118 1.61881 1.25759 1.19663 0.95274 1.24305 0.98677 0.89777 1.25700 0.97014 1.01628 1.02720 1.69847 1.06642 1.44830 1.40947 0.85044 0.77849 0.77197 0.79067 1.21274 1.22333 1.18897 1.18016 0.93232 0.91614 0.86367 1.20895 1.09698 1.01131 0.91266 1.21199 0.96228 0.94690 0.97819 1.21194 1.05492 0.96076 0.98402 1.21164 0.96919 1.00095 0.92095 1.20850 1.08900 0.94683 0.99239 0.92757 0.91782 0.90425 0.91272 0.91189 0.84288 0.85573 0.74409 0.93589 0.93308 0.94262 0.94411 0.79595 0.93905 0.85203 0.84246 0.84827 0.84914 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.12 1.98 5.88 86.38 0.51 2.49 16 3 N -0.61 -12.21 2.09 -701.64 -1.47 -13.68 16 4 C 0.11 1.83 5.64 85.63 0.48 2.32 16 5 C 0.48 12.66 7.90 87.66 0.69 13.35 16 6 O -0.58 -21.67 16.43 -3.03 -0.05 -21.71 16 7 N -0.71 -17.43 5.56 -463.05 -2.57 -20.00 16 8 C 0.13 4.46 5.79 86.38 0.50 4.96 16 9 C 0.15 5.66 6.37 86.38 0.55 6.21 16 10 N -0.75 -38.30 5.60 -343.45 -1.92 -40.23 16 11 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 12 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 13 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 14 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 15 Si 0.98 45.74 29.55 68.60 2.03 47.76 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 19 C 0.21 4.78 6.55 38.21 0.25 5.03 16 20 C -0.21 -4.38 9.20 22.40 0.21 -4.17 16 21 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 22 C -0.19 -3.71 10.04 22.29 0.22 -3.49 16 23 C -0.08 -1.76 10.04 22.25 0.22 -1.53 16 24 C -0.21 -4.89 9.21 22.40 0.21 -4.68 16 25 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 29 H 0.07 1.25 6.20 -2.39 -0.01 1.23 16 30 H 0.14 1.35 8.07 -2.39 -0.02 1.33 16 31 H 0.13 1.58 6.20 -2.39 -0.01 1.56 16 32 H 0.42 6.92 8.47 -92.71 -0.79 6.14 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 39 H 0.13 2.35 6.15 -2.91 -0.02 2.33 16 40 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.12 2.50 6.14 -2.91 -0.02 2.48 16 Total: -1.00 -75.83 360.28 1.92 -73.90 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -0.48 Total: 32.95 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.11 Total: 1.15 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -5.68 Total: -134.05 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.83 1.92 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152121078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.153 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds