Wall clock time and date at job start Tue Mar 31 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99691 * 2 1 4 4 C 1.46894 * 111.00366 * 123.95826 * 2 1 3 5 5 C 1.50697 * 109.47365 * 170.00075 * 4 2 1 6 6 C 1.38380 * 119.92539 * 269.97736 * 5 4 2 7 7 C 1.38344 * 120.29017 * 180.02562 * 6 5 4 8 8 C 1.37978 * 120.14704 * 359.69779 * 7 6 5 9 9 C 1.39565 * 119.84870 * 0.57678 * 8 7 6 10 10 C 1.47846 * 120.14297 * 179.72374 * 9 8 7 11 11 O 1.21553 * 120.00032 * 179.72296 * 10 9 8 12 12 N 1.34779 * 120.00003 * 359.72484 * 10 9 8 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.46840 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00002 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00147 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47166 * 90.00248 * 20 18 16 22 22 H 1.48501 * 109.46982 * 210.00125 * 20 18 16 23 23 H 1.48494 * 109.47221 * 330.00034 * 20 18 16 24 24 C 1.37939 * 119.92864 * 89.99946 * 5 4 2 25 25 H 1.09002 * 109.47124 * 296.04135 * 1 2 3 26 26 H 1.08997 * 109.47229 * 56.04446 * 1 2 3 27 27 H 1.08999 * 109.46882 * 176.04095 * 1 2 3 28 28 H 1.09003 * 109.47013 * 183.95412 * 3 2 1 29 29 H 1.08999 * 109.47755 * 303.95267 * 3 2 1 30 30 H 1.09000 * 109.47170 * 63.95883 * 3 2 1 31 31 H 1.08996 * 109.47067 * 49.99919 * 4 2 1 32 32 H 1.09006 * 109.47118 * 290.00251 * 4 2 1 33 33 H 1.07994 * 119.85736 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.92489 * 179.97438 * 7 6 5 35 35 H 1.07993 * 120.07732 * 180.27654 * 8 7 6 36 36 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 38 38 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 39 39 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 41 41 H 0.97005 * 120.00448 * 359.97438 * 15 14 13 42 42 H 0.96996 * 119.99724 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.06939 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 3.4818 -0.9525 0.9727 6 6 3.9683 -2.0595 0.2998 7 6 5.3313 -2.2384 0.1446 8 6 6.2147 -1.3096 0.6552 9 6 5.7308 -0.1939 1.3399 10 6 6.6718 0.8022 1.8950 11 8 6.2474 1.7756 2.4866 12 7 8.0002 0.6310 1.7451 13 6 8.9327 1.6178 2.2957 14 6 10.3689 1.1891 1.9885 15 7 11.3013 2.1762 2.5385 16 6 12.6510 2.0024 2.3861 17 1 13.0282 1.1374 1.8608 18 6 13.5345 2.9374 2.9077 19 7 14.8318 2.7706 2.7608 20 14 12.8822 4.4332 3.8169 21 1 12.7530 4.1167 5.2620 22 1 13.8231 5.5686 3.6411 23 1 11.5521 4.8035 3.2704 24 6 4.3543 -0.0196 1.4933 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0710 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5091 -1.7407 1.1754 32 1 1.7976 -0.2249 2.0628 33 1 3.2810 -2.7874 -0.1053 34 1 5.7045 -3.1048 -0.3812 35 1 7.2783 -1.4482 0.5295 36 1 8.3389 -0.1459 1.2734 37 1 8.7958 1.6844 3.3750 38 1 8.7400 2.5911 1.8443 39 1 10.5619 0.2158 2.4396 40 1 10.5054 1.1229 0.9092 41 1 10.9626 2.9530 3.0107 42 1 15.4492 3.4238 3.1256 43 1 3.9734 0.8435 2.0189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152237592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:41 Heat of formation + Delta-G solvation = 11.006708 kcal Electronic energy + Delta-G solvation = -22092.190826 eV Core-core repulsion = 18751.804904 eV Total energy + Delta-G solvation = -3340.385923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43357 -38.95924 -37.23467 -35.88719 -34.04779 -32.30181 -31.51275 -31.19812 -28.34230 -27.90172 -27.06081 -24.45145 -23.12727 -22.60107 -21.70965 -21.50133 -20.05855 -18.10118 -17.43165 -16.45377 -16.13950 -15.89128 -15.61171 -15.43833 -15.40172 -14.74714 -14.45860 -14.14721 -13.97379 -13.76436 -13.72092 -13.07218 -12.77632 -12.72415 -12.64086 -12.43063 -12.10363 -11.97877 -11.73741 -11.60339 -11.51836 -11.28062 -10.96741 -10.86219 -10.17457 -9.97546 -9.63565 -9.26091 -9.21817 -9.02037 -8.88537 -8.73912 -7.31948 -5.81240 -3.18790 0.64151 1.02650 2.73914 3.11829 3.37646 3.41340 3.45280 3.49439 3.84263 4.32513 4.47395 4.55061 4.56592 4.75755 4.79513 4.87130 4.96670 5.01636 5.09189 5.20600 5.26726 5.30421 5.33450 5.43071 5.44086 5.54519 5.58914 5.63714 5.65695 5.68584 5.93439 6.04141 6.08187 6.20843 6.34277 6.52085 6.56360 6.56414 6.59639 6.63511 7.49575 7.91949 8.18794 8.36725 9.14294 9.86617 10.04890 11.36503 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.002495 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.814083 B =11221.642528 C =11864.597763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.017 3.983 4 C 0.093 3.907 5 C -0.090 4.090 6 C -0.075 4.075 7 C -0.127 4.127 8 C -0.085 4.085 9 C -0.130 4.130 10 C 0.555 3.445 11 O -0.540 6.540 12 N -0.717 5.717 13 C 0.107 3.893 14 C 0.148 3.852 15 N -0.752 5.752 16 C -0.249 4.249 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.276 1.276 24 C -0.055 4.055 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.248 -10.913 -6.319 31.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.131 4.131 4 C -0.034 4.034 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.145 4.145 8 C -0.104 4.104 9 C -0.133 4.133 10 C 0.342 3.658 11 O -0.419 6.419 12 N -0.369 5.369 13 C -0.016 4.016 14 C 0.020 3.980 15 N -0.399 5.399 16 C -0.379 4.379 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.579 5.579 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.074 4.074 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.196 0.804 42 H 0.071 0.929 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -29.146 -10.512 -6.385 31.635 hybrid contribution -0.310 1.137 1.132 1.634 sum -29.456 -9.375 -5.253 31.356 Atomic orbital electron populations 1.22399 0.87009 1.02318 1.00717 1.62012 1.07771 1.14372 1.42467 1.22506 1.01715 0.88230 1.00606 1.21068 0.91155 0.99117 0.92078 1.19646 0.94858 0.95272 0.99321 1.21191 0.95427 0.96778 0.95994 1.21111 0.93161 0.99546 1.00635 1.21379 1.00127 0.93094 0.95760 1.19943 0.94055 0.96583 1.02736 1.18259 0.82285 0.85556 0.79721 1.90772 1.77933 1.30789 1.42360 1.45814 1.05682 1.27288 1.58072 1.21633 0.88971 0.91832 0.99205 1.20733 0.86260 0.93542 0.97430 1.42528 1.03365 1.25507 1.68467 1.19005 0.80030 1.07700 1.31119 0.89072 1.24682 0.95086 0.98582 1.00618 1.69701 1.00575 1.37172 1.50413 0.86538 0.78087 0.83638 0.80244 1.20914 1.21578 1.20167 1.21148 0.91539 0.98080 0.96652 0.95544 0.91158 0.91271 0.90720 0.91272 0.95352 0.89649 0.93584 0.85551 0.85211 0.85371 0.76415 0.91171 0.91178 0.94847 0.94893 0.80367 0.92932 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.07 0.57 0.71 16 2 N -0.54 -4.29 5.01 -252.73 -1.27 -5.56 16 3 C 0.02 0.14 9.14 60.07 0.55 0.69 16 4 C 0.09 0.70 5.11 -4.98 -0.03 0.67 16 5 C -0.09 -0.81 4.88 -104.68 -0.51 -1.32 16 6 C -0.08 -0.59 9.69 -39.49 -0.38 -0.97 16 7 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 8 C -0.08 -0.77 9.54 -39.18 -0.37 -1.15 16 9 C -0.13 -1.51 5.87 -104.97 -0.62 -2.13 16 10 C 0.55 8.07 7.77 -12.33 -0.10 7.97 16 11 O -0.54 -9.79 16.35 5.32 0.09 -9.70 16 12 N -0.72 -9.63 5.51 -61.25 -0.34 -9.97 16 13 C 0.11 1.75 5.79 -4.04 -0.02 1.72 16 14 C 0.15 2.76 6.37 -4.04 -0.03 2.73 16 15 N -0.75 -17.91 5.41 -59.91 -0.32 -18.23 16 16 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 17 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 18 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 20 Si 0.89 22.24 27.74 -169.99 -4.71 17.52 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 24 C -0.05 -0.60 7.50 -39.19 -0.29 -0.89 16 25 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 27 H 0.07 0.34 8.12 -51.93 -0.42 -0.09 16 28 H 0.07 0.72 6.16 -51.93 -0.32 0.40 16 29 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.51 8.01 -51.93 -0.42 0.09 16 32 H 0.05 0.35 8.06 -51.93 -0.42 -0.07 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.92 6.40 -52.49 -0.34 0.59 16 36 H 0.40 4.23 6.51 -40.82 -0.27 3.96 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.36 8.52 5.53 -40.82 -0.23 8.29 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 43 H 0.13 1.52 7.62 -52.49 -0.40 1.12 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -34.15 355.96 -8.91 -43.07 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.62 Total: 6.34 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.88 Total: -0.43 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -1.15 Total: -62.16 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.15 -8.91 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152237592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.072 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds