Wall clock time and date at job start Tue Mar 31 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99691 * 2 1 4 4 C 1.46894 * 111.00366 * 123.95826 * 2 1 3 5 5 C 1.50697 * 109.47365 * 170.00075 * 4 2 1 6 6 C 1.38380 * 119.92539 * 269.97736 * 5 4 2 7 7 C 1.38344 * 120.29017 * 180.02562 * 6 5 4 8 8 C 1.37978 * 120.14704 * 359.69779 * 7 6 5 9 9 C 1.39565 * 119.84870 * 0.57678 * 8 7 6 10 10 C 1.47846 * 120.14297 * 179.72374 * 9 8 7 11 11 O 1.21553 * 120.00032 * 179.72296 * 10 9 8 12 12 N 1.34779 * 120.00003 * 359.72484 * 10 9 8 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.46840 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00002 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00147 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99891 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47166 * 90.00248 * 20 18 16 22 22 H 1.48501 * 109.46982 * 210.00125 * 20 18 16 23 23 H 1.48494 * 109.47221 * 330.00034 * 20 18 16 24 24 C 1.37939 * 119.92864 * 89.99946 * 5 4 2 25 25 H 1.09002 * 109.47124 * 296.04135 * 1 2 3 26 26 H 1.08997 * 109.47229 * 56.04446 * 1 2 3 27 27 H 1.08999 * 109.46882 * 176.04095 * 1 2 3 28 28 H 1.09003 * 109.47013 * 183.95412 * 3 2 1 29 29 H 1.08999 * 109.47755 * 303.95267 * 3 2 1 30 30 H 1.09000 * 109.47170 * 63.95883 * 3 2 1 31 31 H 1.08996 * 109.47067 * 49.99919 * 4 2 1 32 32 H 1.09006 * 109.47118 * 290.00251 * 4 2 1 33 33 H 1.07994 * 119.85736 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.92489 * 179.97438 * 7 6 5 35 35 H 1.07993 * 120.07732 * 180.27654 * 8 7 6 36 36 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 38 38 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 39 39 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 41 41 H 0.97005 * 120.00448 * 359.97438 * 15 14 13 42 42 H 0.96996 * 119.99724 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.06939 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 3.4818 -0.9525 0.9727 6 6 3.9683 -2.0595 0.2998 7 6 5.3313 -2.2384 0.1446 8 6 6.2147 -1.3096 0.6552 9 6 5.7308 -0.1939 1.3399 10 6 6.6718 0.8022 1.8950 11 8 6.2474 1.7756 2.4866 12 7 8.0002 0.6310 1.7451 13 6 8.9327 1.6178 2.2957 14 6 10.3689 1.1891 1.9885 15 7 11.3013 2.1762 2.5385 16 6 12.6510 2.0024 2.3861 17 1 13.0282 1.1374 1.8608 18 6 13.5345 2.9374 2.9077 19 7 14.8318 2.7706 2.7608 20 14 12.8822 4.4332 3.8169 21 1 12.7530 4.1167 5.2620 22 1 13.8231 5.5686 3.6411 23 1 11.5521 4.8035 3.2704 24 6 4.3543 -0.0196 1.4933 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0710 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5091 -1.7407 1.1754 32 1 1.7976 -0.2249 2.0628 33 1 3.2810 -2.7874 -0.1053 34 1 5.7045 -3.1048 -0.3812 35 1 7.2783 -1.4482 0.5295 36 1 8.3389 -0.1459 1.2734 37 1 8.7958 1.6844 3.3750 38 1 8.7400 2.5911 1.8443 39 1 10.5619 0.2158 2.4396 40 1 10.5054 1.1229 0.9092 41 1 10.9626 2.9530 3.0107 42 1 15.4492 3.4238 3.1256 43 1 3.9734 0.8435 2.0189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152237592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:41 Heat of formation + Delta-G solvation = -14.113305 kcal Electronic energy + Delta-G solvation = -22093.280112 eV Core-core repulsion = 18751.804904 eV Total energy + Delta-G solvation = -3341.475208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36215 -39.85902 -37.88266 -37.47026 -35.63745 -33.63448 -32.79010 -32.12697 -29.84820 -28.51515 -27.70378 -25.83044 -24.35817 -23.48354 -23.04778 -22.42545 -21.08421 -19.88649 -18.62974 -17.47726 -16.93494 -16.76212 -16.61216 -16.42935 -16.29351 -16.06790 -15.68409 -15.31427 -15.29850 -15.08290 -14.73848 -14.60755 -13.76125 -13.53637 -13.44839 -13.25330 -13.18637 -12.99946 -12.74640 -12.71980 -12.63876 -12.52242 -12.39530 -12.10032 -11.91629 -11.83749 -11.13490 -11.04902 -10.31716 -9.90404 -9.83617 -9.37694 -9.33434 -8.05962 -5.41438 -0.14699 0.34402 1.38584 1.40155 1.47365 1.79112 1.98407 2.45902 2.75181 3.21314 3.25617 3.55631 3.70227 3.77126 3.89984 3.96207 4.09834 4.16285 4.21934 4.30084 4.35796 4.42142 4.50124 4.55439 4.59831 4.72303 4.76014 4.87123 4.96341 4.98774 5.02596 5.03421 5.06568 5.26323 5.32658 5.42417 5.54856 5.71497 5.91024 5.96896 6.05882 6.16810 6.43623 7.01869 7.09354 7.76427 7.94106 9.14620 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.002495 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.814083 B =11221.642528 C =11864.597763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.020 3.980 4 C 0.094 3.906 5 C -0.094 4.094 6 C -0.069 4.069 7 C -0.123 4.123 8 C -0.084 4.084 9 C -0.152 4.152 10 C 0.554 3.446 11 O -0.585 6.585 12 N -0.706 5.706 13 C 0.122 3.878 14 C 0.150 3.850 15 N -0.759 5.759 16 C -0.237 4.237 17 H 0.065 0.935 18 C -0.061 4.061 19 N -0.979 5.979 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.255 1.255 24 C -0.067 4.067 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.416 0.584 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.366 0.634 42 H 0.259 0.741 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.516 -12.393 -7.081 34.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.275 5.275 3 C -0.128 4.128 4 C -0.034 4.034 5 C -0.094 4.094 6 C -0.087 4.087 7 C -0.140 4.140 8 C -0.103 4.103 9 C -0.155 4.155 10 C 0.343 3.657 11 O -0.466 6.466 12 N -0.358 5.358 13 C -0.003 4.003 14 C 0.024 3.976 15 N -0.405 5.405 16 C -0.368 4.368 17 H 0.083 0.917 18 C -0.253 4.253 19 N -0.629 5.629 20 Si 0.779 3.221 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.179 1.179 24 C -0.087 4.087 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.254 0.746 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.200 0.800 42 H 0.068 0.932 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -31.461 -12.041 -7.174 34.442 hybrid contribution 0.326 1.450 1.282 1.962 sum -31.135 -10.591 -5.893 33.410 Atomic orbital electron populations 1.22460 0.85677 1.03355 1.00967 1.62037 1.09010 1.13819 1.42588 1.22443 1.00665 0.88961 1.00752 1.21117 0.90472 1.00027 0.91746 1.19815 0.95347 0.95175 0.99088 1.21565 0.96153 0.96404 0.94593 1.21486 0.92907 0.99847 0.99790 1.21615 1.01483 0.92272 0.94918 1.19785 0.93596 0.97244 1.04867 1.18758 0.82604 0.85496 0.78867 1.90741 1.78618 1.32787 1.44482 1.45624 1.05133 1.27230 1.57862 1.21274 0.88068 0.92103 0.98824 1.20831 0.86493 0.92690 0.97608 1.42551 1.02452 1.26730 1.68788 1.19008 0.82078 1.06348 1.29377 0.91721 1.25493 0.95297 1.02091 1.02381 1.69867 1.02069 1.38573 1.52365 0.85452 0.78183 0.79470 0.78962 1.20363 1.21989 1.17943 1.21111 0.91819 0.98327 0.97436 0.95481 0.90709 0.89865 0.92478 0.90527 0.95736 0.87563 0.94209 0.82920 0.82146 0.83554 0.74582 0.91904 0.92061 0.93827 0.93962 0.80049 0.93180 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.45 16 2 N -0.55 -7.89 5.01 -953.49 -4.78 -12.67 16 3 C 0.02 0.33 9.14 127.69 1.17 1.49 16 4 C 0.09 1.25 5.11 85.56 0.44 1.69 16 5 C -0.09 -1.53 4.88 -19.90 -0.10 -1.63 16 6 C -0.07 -0.86 9.69 22.33 0.22 -0.64 16 7 C -0.12 -1.47 10.03 22.23 0.22 -1.25 16 8 C -0.08 -1.34 9.54 22.53 0.21 -1.12 16 9 C -0.15 -3.44 5.87 -20.09 -0.12 -3.55 16 10 C 0.55 16.08 7.77 86.79 0.67 16.76 16 11 O -0.58 -21.80 16.35 -3.88 -0.06 -21.86 16 12 N -0.71 -18.24 5.51 -465.97 -2.57 -20.81 16 13 C 0.12 3.86 5.79 86.38 0.50 4.36 16 14 C 0.15 5.39 6.37 86.38 0.55 5.94 16 15 N -0.76 -35.36 5.41 -343.46 -1.86 -37.21 16 16 C -0.24 -13.45 10.47 84.03 0.88 -12.57 16 17 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 18 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 19 N -0.98 -62.43 13.97 21.65 0.30 -62.13 16 20 Si 0.95 45.87 27.74 68.60 1.90 47.78 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 23 H -0.25 -11.25 6.52 99.48 0.65 -10.60 16 24 C -0.07 -1.47 7.50 22.53 0.17 -1.30 16 25 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 27 H 0.08 0.59 8.12 -2.39 -0.02 0.57 16 28 H 0.06 1.13 6.16 -2.39 -0.01 1.11 16 29 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 30 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.96 8.01 -2.39 -0.02 0.94 16 32 H 0.04 0.58 8.06 -2.38 -0.02 0.56 16 33 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 35 H 0.15 1.67 6.40 -2.91 -0.02 1.66 16 36 H 0.42 7.98 6.51 -92.71 -0.60 7.38 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.37 16.59 5.53 -92.70 -0.51 16.08 16 42 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 43 H 0.11 2.81 7.62 -2.91 -0.02 2.79 16 Total: -1.00 -74.72 355.96 -0.71 -75.44 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.16 Total: 24.95 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.51 Total: 6.52 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -8.90 Total: -132.82 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.86 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.78 kcal Total: -74.72 -0.71 -75.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152237592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.324 kcal (2) G-P(sol) polarization free energy of solvation -74.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds