Wall clock time and date at job start Tue Mar 31 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00013 * 2 1 4 4 C 1.46894 * 111.00051 * 123.95805 * 2 1 3 5 5 C 1.50703 * 109.47167 * 164.82559 * 4 2 1 6 6 C 1.37980 * 120.07161 * 106.58659 * 5 4 2 7 7 C 1.38342 * 120.14297 * 180.02562 * 6 5 4 8 8 C 1.38384 * 120.29169 * 0.02562 * 7 6 5 9 9 C 1.37933 * 120.14550 * 0.02562 * 8 7 6 10 10 C 1.39556 * 120.07453 * 286.31683 * 5 4 2 11 11 C 1.47847 * 120.14156 * 359.97438 * 10 5 4 12 12 O 1.21549 * 120.00132 * 354.18297 * 11 10 5 13 13 N 1.34776 * 120.00029 * 174.18512 * 11 10 5 14 14 C 1.46493 * 120.00430 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47307 * 179.97438 * 14 13 11 16 16 N 1.46502 * 109.46821 * 180.02562 * 15 14 13 17 17 C 1.36941 * 119.99904 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99595 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00371 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00389 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47001 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47262 * 119.99554 * 21 19 17 24 24 H 1.48497 * 109.47222 * 239.99815 * 21 19 17 25 25 H 1.09000 * 109.47320 * 296.04074 * 1 2 3 26 26 H 1.08993 * 109.47474 * 56.04578 * 1 2 3 27 27 H 1.09005 * 109.47255 * 176.04247 * 1 2 3 28 28 H 1.08996 * 109.47528 * 188.99921 * 3 2 1 29 29 H 1.08999 * 109.47104 * 308.99959 * 3 2 1 30 30 H 1.09003 * 109.46765 * 68.99614 * 3 2 1 31 31 H 1.09004 * 109.47191 * 284.82250 * 4 2 1 32 32 H 1.08997 * 109.47552 * 44.82551 * 4 2 1 33 33 H 1.07996 * 119.92950 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.85194 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.92635 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.07232 * 179.97438 * 9 8 7 37 37 H 0.97008 * 119.99317 * 359.97438 * 13 11 10 38 38 H 1.09001 * 109.47663 * 300.00470 * 14 13 11 39 39 H 1.09004 * 109.47106 * 60.00338 * 14 13 11 40 40 H 1.08994 * 109.47316 * 300.00163 * 15 14 13 41 41 H 1.08998 * 109.46994 * 60.00392 * 15 14 13 42 42 H 0.96997 * 120.00253 * 0.02562 * 16 15 14 43 43 H 0.96992 * 120.00001 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4557 -1.0620 0.9111 6 6 4.4181 -0.3865 1.6332 7 6 5.7590 -0.6566 1.4262 8 6 6.1444 -1.6044 0.4945 9 6 5.1924 -2.2860 -0.2348 10 6 3.8374 -2.0238 -0.0253 11 6 2.8113 -2.7560 -0.7979 12 8 1.6328 -2.5986 -0.5450 13 7 3.1825 -3.5980 -1.7826 14 6 2.1659 -4.3239 -2.5478 15 6 2.8489 -5.2040 -3.5966 16 7 1.8321 -5.9295 -4.3622 17 6 2.2094 -6.7849 -5.3628 18 1 3.2565 -6.9244 -5.5878 19 6 1.2461 -7.4720 -6.0886 20 7 -0.0301 -7.3016 -5.8148 21 14 1.7606 -8.6383 -7.4540 22 1 3.2417 -8.6515 -7.5617 23 1 1.2741 -10.0070 -7.1454 24 1 1.1752 -8.1832 -8.7406 25 1 -0.3634 0.4511 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0253 -0.0709 28 1 3.0732 1.3469 -0.1607 29 1 1.5219 1.9423 -0.7986 30 1 1.7817 1.8425 0.9594 31 1 1.8802 -0.1841 2.0519 32 1 1.4452 -1.7023 1.2309 33 1 4.1239 0.3546 2.3616 34 1 6.5083 -0.1249 1.9938 35 1 7.1928 -1.8109 0.3379 36 1 5.4945 -3.0251 -0.9620 37 1 4.1231 -3.7232 -1.9846 38 1 1.5811 -4.9492 -1.8733 39 1 1.5077 -3.6113 -3.0450 40 1 3.4334 -4.5784 -4.2711 41 1 3.5073 -5.9166 -3.0999 42 1 0.8917 -5.8039 -4.1604 43 1 -0.7032 -7.7814 -6.3222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152393082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:45 Heat of formation + Delta-G solvation = 16.685668 kcal Electronic energy + Delta-G solvation = -22874.642498 eV Core-core repulsion = 19534.502833 eV Total energy + Delta-G solvation = -3340.139665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.40922 -38.35023 -37.08177 -35.56514 -33.82331 -31.87021 -31.75300 -30.79542 -27.81487 -27.52801 -26.75243 -24.21829 -23.22109 -22.54498 -21.58042 -20.92892 -20.22727 -17.80344 -17.13551 -16.17756 -15.86665 -15.58192 -15.37995 -15.03547 -14.93797 -14.60160 -14.43601 -14.29513 -13.69402 -13.43089 -13.12337 -12.96250 -12.77815 -12.63511 -12.41546 -12.14741 -11.77177 -11.65120 -11.54740 -11.34390 -11.19038 -11.05968 -10.80805 -10.75598 -10.06039 -9.78538 -9.42167 -9.16315 -9.00258 -8.92715 -8.66755 -8.28062 -6.96631 -5.77631 -3.08041 0.76438 1.11726 2.97604 3.35858 3.43489 3.49282 3.51346 3.74538 4.13635 4.57266 4.59135 4.60392 4.68283 4.84583 5.05384 5.13431 5.24463 5.25680 5.34058 5.45276 5.53014 5.54303 5.59133 5.66974 5.71805 5.77624 5.84542 5.88959 6.01693 6.05976 6.10530 6.19090 6.21711 6.32411 6.58190 6.66130 6.75774 6.84130 7.03636 7.10616 7.68346 7.75362 8.39968 8.49489 9.51458 10.06757 10.41602 11.45084 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.003072 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.848992 B = 9111.170839 C =10126.417572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.524 5.524 3 C 0.022 3.978 4 C 0.092 3.908 5 C -0.023 4.023 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.108 4.108 11 C 0.556 3.444 12 O -0.516 6.516 13 N -0.722 5.722 14 C 0.115 3.885 15 C 0.144 3.856 16 N -0.729 5.729 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.020 0.980 31 H 0.031 0.969 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.395 0.605 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.386 0.614 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 17.165 17.123 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.247 5.247 3 C -0.126 4.126 4 C -0.035 4.035 5 C -0.025 4.025 6 C -0.145 4.145 7 C -0.118 4.118 8 C -0.147 4.147 9 C -0.108 4.108 10 C -0.112 4.112 11 C 0.343 3.657 12 O -0.392 6.392 13 N -0.375 5.375 14 C -0.009 4.009 15 C 0.016 3.984 16 N -0.375 5.375 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.220 0.780 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.810 16.934 16.729 25.746 hybrid contribution 0.275 -0.239 -0.140 0.390 sum 10.085 16.696 16.589 25.606 Atomic orbital electron populations 1.22316 0.86632 1.03124 0.99344 1.61741 1.08169 1.12300 1.42533 1.22453 1.00943 0.89476 0.99767 1.21187 0.91521 1.00108 0.90639 1.19880 0.95717 0.93316 0.93575 1.21038 0.92705 1.00264 1.00480 1.21275 0.95891 0.97190 0.97464 1.21088 0.99590 0.97105 0.96889 1.21381 0.91990 0.98832 0.98616 1.19875 0.93264 0.98996 0.99049 1.18088 0.88397 0.79132 0.80130 1.90708 1.17980 1.63769 1.66750 1.45861 1.10603 1.45092 1.35908 1.21526 0.90673 0.94967 0.93690 1.20761 0.92794 0.93093 0.91766 1.42198 1.04484 1.51058 1.39711 1.19244 0.92557 1.16840 1.08687 0.91003 1.24776 0.95245 1.00740 1.00142 1.69680 0.99027 1.45925 1.43254 0.86083 0.77544 0.80567 0.81766 1.20514 1.21800 1.21797 0.96520 0.91801 0.90260 0.91728 0.91669 0.96145 0.95059 0.87320 0.85874 0.85799 0.85530 0.85456 0.77001 0.91375 0.91227 0.95847 0.95889 0.78001 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.35 60.06 0.56 0.96 16 2 N -0.52 -6.62 3.99 -252.73 -1.01 -7.63 16 3 C 0.02 0.23 9.39 60.06 0.56 0.79 16 4 C 0.09 1.11 4.13 -4.98 -0.02 1.09 16 5 C -0.02 -0.27 4.66 -104.22 -0.49 -0.75 16 6 C -0.13 -1.15 9.46 -39.64 -0.38 -1.52 16 7 C -0.10 -0.79 10.04 -39.49 -0.40 -1.19 16 8 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 9 C -0.09 -0.89 9.53 -39.19 -0.37 -1.26 16 10 C -0.11 -1.35 5.87 -104.97 -0.62 -1.96 16 11 C 0.56 8.39 7.70 -12.33 -0.09 8.30 16 12 O -0.52 -9.03 12.00 5.32 0.06 -8.97 16 13 N -0.72 -10.43 5.51 -61.25 -0.34 -10.77 16 14 C 0.11 2.02 5.79 -4.04 -0.02 2.00 16 15 C 0.14 2.87 6.37 -4.04 -0.03 2.85 16 16 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 27 H 0.08 1.07 7.59 -51.93 -0.39 0.68 16 28 H 0.06 0.67 7.44 -51.93 -0.39 0.28 16 29 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 30 H 0.02 0.18 8.02 -51.93 -0.42 -0.23 16 31 H 0.03 0.32 7.77 -51.93 -0.40 -0.08 16 32 H 0.11 1.51 6.06 -51.93 -0.31 1.20 16 33 H 0.12 0.89 7.99 -52.49 -0.42 0.47 16 34 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.04 6.44 -52.49 -0.34 0.70 16 37 H 0.40 4.66 6.54 -40.82 -0.27 4.39 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -32.83 353.44 -9.11 -41.95 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.59 Total: 9.10 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.93 Total: 0.39 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -0.96 Total: -65.20 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.06 Total: -8.97 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.83 -9.11 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152393082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.634 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds