Wall clock time and date at job start Tue Mar 31 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00013 * 2 1 4 4 C 1.46894 * 111.00051 * 123.95805 * 2 1 3 5 5 C 1.50703 * 109.47167 * 164.82559 * 4 2 1 6 6 C 1.37980 * 120.07161 * 106.58659 * 5 4 2 7 7 C 1.38342 * 120.14297 * 180.02562 * 6 5 4 8 8 C 1.38384 * 120.29169 * 0.02562 * 7 6 5 9 9 C 1.37933 * 120.14550 * 0.02562 * 8 7 6 10 10 C 1.39556 * 120.07453 * 286.31683 * 5 4 2 11 11 C 1.47847 * 120.14156 * 359.97438 * 10 5 4 12 12 O 1.21549 * 120.00132 * 354.18297 * 11 10 5 13 13 N 1.34776 * 120.00029 * 174.18512 * 11 10 5 14 14 C 1.46493 * 120.00430 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47307 * 179.97438 * 14 13 11 16 16 N 1.46502 * 109.46821 * 180.02562 * 15 14 13 17 17 C 1.36941 * 119.99904 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99595 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00371 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00389 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47001 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47262 * 119.99554 * 21 19 17 24 24 H 1.48497 * 109.47222 * 239.99815 * 21 19 17 25 25 H 1.09000 * 109.47320 * 296.04074 * 1 2 3 26 26 H 1.08993 * 109.47474 * 56.04578 * 1 2 3 27 27 H 1.09005 * 109.47255 * 176.04247 * 1 2 3 28 28 H 1.08996 * 109.47528 * 188.99921 * 3 2 1 29 29 H 1.08999 * 109.47104 * 308.99959 * 3 2 1 30 30 H 1.09003 * 109.46765 * 68.99614 * 3 2 1 31 31 H 1.09004 * 109.47191 * 284.82250 * 4 2 1 32 32 H 1.08997 * 109.47552 * 44.82551 * 4 2 1 33 33 H 1.07996 * 119.92950 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.85194 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.92635 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.07232 * 179.97438 * 9 8 7 37 37 H 0.97008 * 119.99317 * 359.97438 * 13 11 10 38 38 H 1.09001 * 109.47663 * 300.00470 * 14 13 11 39 39 H 1.09004 * 109.47106 * 60.00338 * 14 13 11 40 40 H 1.08994 * 109.47316 * 300.00163 * 15 14 13 41 41 H 1.08998 * 109.46994 * 60.00392 * 15 14 13 42 42 H 0.96997 * 120.00253 * 0.02562 * 16 15 14 43 43 H 0.96992 * 120.00001 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4557 -1.0620 0.9111 6 6 4.4181 -0.3865 1.6332 7 6 5.7590 -0.6566 1.4262 8 6 6.1444 -1.6044 0.4945 9 6 5.1924 -2.2860 -0.2348 10 6 3.8374 -2.0238 -0.0253 11 6 2.8113 -2.7560 -0.7979 12 8 1.6328 -2.5986 -0.5450 13 7 3.1825 -3.5980 -1.7826 14 6 2.1659 -4.3239 -2.5478 15 6 2.8489 -5.2040 -3.5966 16 7 1.8321 -5.9295 -4.3622 17 6 2.2094 -6.7849 -5.3628 18 1 3.2565 -6.9244 -5.5878 19 6 1.2461 -7.4720 -6.0886 20 7 -0.0301 -7.3016 -5.8148 21 14 1.7606 -8.6383 -7.4540 22 1 3.2417 -8.6515 -7.5617 23 1 1.2741 -10.0070 -7.1454 24 1 1.1752 -8.1832 -8.7406 25 1 -0.3634 0.4511 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0253 -0.0709 28 1 3.0732 1.3469 -0.1607 29 1 1.5219 1.9423 -0.7986 30 1 1.7817 1.8425 0.9594 31 1 1.8802 -0.1841 2.0519 32 1 1.4452 -1.7023 1.2309 33 1 4.1239 0.3546 2.3616 34 1 6.5083 -0.1249 1.9938 35 1 7.1928 -1.8109 0.3379 36 1 5.4945 -3.0251 -0.9620 37 1 4.1231 -3.7232 -1.9846 38 1 1.5811 -4.9492 -1.8733 39 1 1.5077 -3.6113 -3.0450 40 1 3.4334 -4.5784 -4.2711 41 1 3.5073 -5.9166 -3.0999 42 1 0.8917 -5.8039 -4.1604 43 1 -0.7032 -7.7814 -6.3222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152393082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:44 Heat of formation + Delta-G solvation = -6.194405 kcal Electronic energy + Delta-G solvation = -22875.634653 eV Core-core repulsion = 19534.502833 eV Total energy + Delta-G solvation = -3341.131819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36834 -39.37945 -37.94782 -37.21028 -35.45940 -33.31079 -32.63904 -32.07140 -29.35925 -28.41417 -27.71174 -25.79185 -24.49499 -23.40985 -23.09452 -21.93025 -21.27856 -19.34408 -18.63504 -17.16082 -16.78924 -16.69137 -16.61519 -16.26422 -16.24305 -15.88817 -15.35295 -15.24104 -15.12979 -15.02888 -14.84589 -14.16575 -13.70482 -13.49819 -13.27592 -13.04080 -13.02954 -12.94625 -12.68065 -12.62234 -12.50913 -12.46516 -12.39931 -12.04309 -11.91049 -11.83250 -11.00114 -10.57184 -10.11593 -9.84466 -9.69367 -9.15901 -9.06452 -7.96575 -5.28123 -0.03940 0.41551 1.48709 1.50300 1.60448 2.01313 2.15646 2.58754 2.86432 3.29092 3.37699 3.73925 3.83445 3.87524 4.05620 4.16365 4.20826 4.24634 4.27643 4.34831 4.43151 4.54042 4.57629 4.59146 4.61396 4.74200 4.82474 4.93603 4.98259 5.05018 5.07751 5.10417 5.14400 5.40341 5.44743 5.51728 5.53744 5.55334 5.98331 6.14310 6.24287 6.25684 6.63029 7.30347 7.34859 8.01973 8.25519 9.27391 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.003072 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.848992 B = 9111.170839 C =10126.417572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.548 5.548 3 C 0.027 3.973 4 C 0.097 3.903 5 C -0.039 4.039 6 C -0.127 4.127 7 C -0.090 4.090 8 C -0.127 4.127 9 C -0.093 4.093 10 C -0.135 4.135 11 C 0.550 3.450 12 O -0.548 6.548 13 N -0.714 5.714 14 C 0.135 3.865 15 C 0.149 3.851 16 N -0.747 5.747 17 C -0.247 4.247 18 H 0.083 0.917 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.141 0.859 37 H 0.410 0.590 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.374 0.626 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.699 18.247 17.905 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.272 5.272 3 C -0.121 4.121 4 C -0.030 4.030 5 C -0.040 4.040 6 C -0.145 4.145 7 C -0.108 4.108 8 C -0.145 4.145 9 C -0.112 4.112 10 C -0.138 4.138 11 C 0.339 3.661 12 O -0.427 6.427 13 N -0.368 5.368 14 C 0.010 3.990 15 C 0.022 3.978 16 N -0.390 5.390 17 C -0.379 4.379 18 H 0.101 0.899 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.808 3.192 22 H -0.186 1.186 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.247 0.753 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.205 0.795 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.126 18.038 17.530 28.372 hybrid contribution -0.646 -0.490 -0.284 0.859 sum 12.480 17.548 17.246 27.589 Atomic orbital electron populations 1.22210 0.86831 1.01611 1.00265 1.61708 1.08308 1.13803 1.43373 1.22426 1.00770 0.88275 1.00666 1.21062 0.91893 0.98932 0.91111 1.19969 0.95796 0.93976 0.94290 1.21275 0.92845 1.00172 1.00242 1.21711 0.95995 0.96350 0.96707 1.21471 1.00652 0.96301 0.96026 1.21592 0.91133 0.99298 0.99143 1.19743 0.93553 1.00293 1.00222 1.18672 0.88796 0.78767 0.79884 1.90705 1.19601 1.64746 1.67635 1.45676 1.10675 1.44839 1.35614 1.21056 0.90868 0.94101 0.92941 1.20840 0.91810 0.93227 0.91883 1.42435 1.05008 1.51482 1.40092 1.19697 0.93061 1.16448 1.08678 0.89898 1.25680 0.95290 1.02983 1.03005 1.69849 1.00174 1.47396 1.44720 0.84985 0.78061 0.77866 0.78281 1.18554 1.22012 1.22048 0.94948 0.91490 0.92913 0.91716 0.91454 0.94645 0.93477 0.90267 0.83877 0.82500 0.82608 0.84148 0.75278 0.92939 0.93155 0.94685 0.94492 0.79464 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 9.35 127.69 1.19 2.15 16 2 N -0.55 -14.00 3.99 -953.50 -3.81 -17.81 16 3 C 0.03 0.52 9.39 127.69 1.20 1.72 16 4 C 0.10 2.35 4.13 85.56 0.35 2.70 16 5 C -0.04 -0.86 4.66 -19.61 -0.09 -0.95 16 6 C -0.13 -1.95 9.46 22.23 0.21 -1.74 16 7 C -0.09 -1.06 10.04 22.33 0.22 -0.83 16 8 C -0.13 -1.62 10.03 22.23 0.22 -1.40 16 9 C -0.09 -1.65 9.53 22.53 0.21 -1.43 16 10 C -0.13 -3.26 5.87 -20.09 -0.12 -3.38 16 11 C 0.55 17.03 7.70 86.79 0.67 17.69 16 12 O -0.55 -20.37 12.00 -3.87 -0.05 -20.42 16 13 N -0.71 -20.72 5.51 -465.98 -2.57 -23.29 16 14 C 0.14 4.89 5.79 86.38 0.50 5.39 16 15 C 0.15 5.91 6.37 86.38 0.55 6.46 16 16 N -0.75 -38.88 5.60 -343.45 -1.92 -40.80 16 17 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 20 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 21 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 1.55 8.06 -2.39 -0.02 1.53 16 27 H 0.05 1.55 7.59 -2.38 -0.02 1.54 16 28 H 0.06 1.24 7.44 -2.39 -0.02 1.22 16 29 H 0.07 1.25 8.03 -2.39 -0.02 1.23 16 30 H 0.04 0.57 8.02 -2.39 -0.02 0.55 16 31 H 0.05 0.94 7.77 -2.39 -0.02 0.92 16 32 H 0.08 2.36 6.06 -2.39 -0.01 2.35 16 33 H 0.14 1.57 7.99 -2.91 -0.02 1.55 16 34 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.14 1.97 6.44 -2.91 -0.02 1.95 16 37 H 0.41 9.25 6.54 -92.70 -0.61 8.64 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -72.34 353.44 0.10 -72.24 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.30 Total: 32.87 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.43 Total: 9.31 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -8.01 Total: -142.20 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.34 0.10 -72.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152393082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.043 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds