Wall clock time and date at job start Tue Mar 31 2020 07:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46904 * 110.99812 * 2 1 4 4 C 1.46895 * 111.00000 * 123.94862 * 2 1 3 5 5 H 1.08999 * 109.47320 * 299.99924 * 4 2 1 6 6 C 1.50700 * 109.47124 * 60.00417 * 4 2 1 7 7 O 1.21279 * 119.99825 * 19.99631 * 6 4 2 8 8 N 1.34777 * 120.00084 * 200.00012 * 6 4 2 9 9 C 1.46500 * 120.00010 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47155 * 179.97438 * 9 8 6 11 11 N 1.46496 * 109.47097 * 180.02562 * 10 9 8 12 12 C 1.36940 * 119.99878 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00068 * 359.97438 * 12 11 10 14 14 C 1.38821 * 119.99895 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99903 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99836 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47380 * 89.99819 * 16 14 12 18 18 H 1.48501 * 109.47156 * 209.99846 * 16 14 12 19 19 H 1.48504 * 109.47566 * 329.99891 * 16 14 12 20 20 C 1.50702 * 109.47470 * 180.02562 * 4 2 1 21 21 C 1.38234 * 120.00271 * 139.99840 * 20 4 2 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 4 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 319.97968 * 20 4 2 26 26 H 1.08993 * 109.47156 * 300.00382 * 1 2 3 27 27 H 1.08999 * 109.46490 * 60.00316 * 1 2 3 28 28 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47291 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47053 * 299.99715 * 3 2 1 31 31 H 1.08997 * 109.47523 * 59.99729 * 3 2 1 32 32 H 0.97001 * 120.00049 * 359.97438 * 8 6 4 33 33 H 1.08990 * 109.47545 * 300.00657 * 9 8 6 34 34 H 1.09008 * 109.46529 * 60.00462 * 9 8 6 35 35 H 1.09001 * 109.47282 * 300.00648 * 10 9 8 36 36 H 1.09000 * 109.46562 * 60.00832 * 10 9 8 37 37 H 0.96995 * 120.00235 * 0.02562 * 11 10 9 38 38 H 0.97000 * 119.99772 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.99769 * 359.97438 * 21 20 4 40 40 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00489 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 1 1.6460 -0.3199 2.0688 6 6 1.5124 -2.1907 1.0506 7 8 1.1214 -2.6348 -0.0080 8 7 1.5148 -2.9713 2.1493 9 6 1.0446 -4.3562 2.0648 10 6 1.1518 -5.0161 3.4411 11 7 0.6822 -6.4011 3.3565 12 6 0.6847 -7.1943 4.4727 13 1 1.0333 -6.7990 5.4153 14 6 0.2392 -8.5067 4.3927 15 7 0.2422 -9.2692 5.4654 16 14 -0.3630 -9.1907 2.7621 17 1 0.7773 -9.7948 2.0272 18 1 -1.3961 -10.2278 3.0117 19 1 -0.9490 -8.0934 1.9510 20 6 3.5020 -0.7429 1.1047 21 6 4.2171 -0.6062 2.2798 22 6 5.5989 -0.5857 2.2495 23 6 6.2657 -0.7025 1.0443 24 6 5.5507 -0.8403 -0.1307 25 6 4.1687 -0.8590 -0.1007 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.0851 1.3425 -0.0005 30 1 1.6460 1.8948 -0.8901 31 1 1.6460 1.8949 0.8899 32 1 1.8278 -2.6162 2.9959 33 1 0.0056 -4.3678 1.7358 34 1 1.6581 -4.9052 1.3503 35 1 2.1910 -5.0045 3.7696 36 1 0.5386 -4.4672 4.1558 37 1 0.3694 -6.7564 2.5098 38 1 -0.0695 -10.1861 5.4096 39 1 3.6961 -0.5153 3.2215 40 1 6.1576 -0.4793 3.1676 41 1 7.3453 -0.6820 1.0202 42 1 6.0716 -0.9311 -1.0724 43 1 3.6101 -0.9658 -1.0187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152522308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:49 Heat of formation + Delta-G solvation = 20.322008 kcal Electronic energy + Delta-G solvation = -23028.516506 eV Core-core repulsion = 19688.534525 eV Total energy + Delta-G solvation = -3339.981981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.62308 -38.91261 -37.01991 -35.72263 -33.96346 -32.21206 -31.35383 -31.08907 -28.84613 -27.70496 -27.08324 -23.70309 -23.00452 -22.55687 -21.73320 -21.46239 -19.97525 -17.87759 -17.34893 -17.05359 -16.31545 -15.92609 -15.40007 -15.11934 -14.62050 -14.58890 -14.56711 -14.15540 -13.84345 -13.70153 -13.55350 -13.20140 -12.93627 -12.65558 -12.57185 -12.47689 -12.15359 -11.85023 -11.53032 -11.50700 -11.23408 -11.19578 -10.95693 -10.85203 -10.17059 -9.97598 -9.63495 -9.11305 -9.03809 -8.90592 -8.86178 -8.62027 -7.31520 -5.81121 -3.18511 1.04543 1.21469 2.62730 2.98087 3.37878 3.41682 3.45421 3.49657 3.85299 4.39235 4.56777 4.62685 4.71155 4.80863 4.86099 4.93096 5.03900 5.10254 5.26364 5.31521 5.36582 5.37007 5.42210 5.43894 5.59982 5.63077 5.64659 5.70709 5.83378 5.86593 5.95331 6.22124 6.30253 6.32655 6.37619 6.57533 6.58199 6.66525 6.72813 6.78541 7.53458 7.92349 8.25018 8.36987 9.14685 9.87031 10.05392 11.36755 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.003425 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.628124 B = 8174.401249 C = 8966.039674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.520 5.520 3 C 0.023 3.977 4 C 0.110 3.890 5 H 0.069 0.931 6 C 0.520 3.480 7 O -0.518 6.518 8 N -0.721 5.721 9 C 0.109 3.891 10 C 0.149 3.851 11 N -0.752 5.752 12 C -0.249 4.249 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.885 3.115 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.084 4.084 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.083 4.083 26 H 0.024 0.976 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 24.828 -9.705 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.244 5.244 3 C -0.125 4.125 4 C -0.002 4.002 5 H 0.086 0.914 6 C 0.304 3.696 7 O -0.393 6.393 8 N -0.373 5.373 9 C -0.014 4.014 10 C 0.021 3.979 11 N -0.399 5.399 12 C -0.379 4.379 13 H 0.109 0.891 14 C -0.189 4.189 15 N -0.579 5.579 16 Si 0.714 3.286 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.202 1.202 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.102 4.102 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.196 0.804 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.238 24.174 -10.676 27.681 hybrid contribution -0.558 -0.084 0.169 0.590 sum 7.679 24.090 -10.507 27.381 Atomic orbital electron populations 1.22522 0.86197 1.03624 1.00550 1.61683 1.08612 1.13378 1.40751 1.22478 1.01368 0.87894 1.00800 1.20469 0.92541 0.92880 0.94341 0.91377 1.20129 0.78341 0.87026 0.84082 1.90704 1.46006 1.74266 1.28331 1.45870 1.66197 1.13471 1.11769 1.21590 0.99964 0.80361 0.99518 1.20724 0.98051 0.86380 0.92731 1.42529 1.78950 1.08616 1.09777 1.19008 1.37007 0.92692 0.89158 0.89103 1.24670 1.01037 0.96322 0.96856 1.69699 1.52832 1.07999 1.27392 0.86546 0.78751 0.78817 0.84445 1.20882 1.21568 1.20175 1.19359 0.92563 1.02448 0.94155 1.21022 0.94452 1.00121 0.97286 1.21088 0.94111 1.00582 0.98121 1.21217 0.99957 0.99436 0.92742 1.21214 0.94149 1.00526 0.98397 1.21143 0.94015 0.96786 0.98228 0.95787 0.90869 0.89966 0.90767 0.90928 0.95575 0.76693 0.91348 0.91339 0.94892 0.94997 0.80381 0.92927 0.85948 0.85828 0.86092 0.85946 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.24 60.07 0.56 0.75 16 2 N -0.52 -5.60 3.94 -246.00 -0.97 -6.57 16 3 C 0.02 0.19 9.19 60.07 0.55 0.74 16 4 C 0.11 1.19 2.08 -70.02 -0.15 1.04 16 5 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 6 C 0.52 7.28 6.19 -10.99 -0.07 7.21 16 7 O -0.52 -9.14 15.03 5.56 0.08 -9.05 16 8 N -0.72 -9.55 5.56 -60.29 -0.33 -9.89 16 9 C 0.11 1.78 5.79 -4.04 -0.02 1.76 16 10 C 0.15 2.78 6.37 -4.04 -0.03 2.76 16 11 N -0.75 -17.97 5.41 -59.91 -0.32 -18.29 16 12 C -0.25 -7.06 10.47 -15.05 -0.16 -7.22 16 13 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 14 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 15 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 16 Si 0.88 22.27 27.74 -169.99 -4.71 17.56 16 17 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 20 C -0.08 -0.88 3.70 -104.62 -0.39 -1.26 16 21 C -0.11 -0.99 9.67 -39.59 -0.38 -1.38 16 22 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 25 C -0.08 -0.90 8.10 -39.58 -0.32 -1.22 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.05 6.01 -51.93 -0.31 0.74 16 29 H 0.07 0.62 6.02 -51.93 -0.31 0.31 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.40 4.23 8.47 -40.82 -0.35 3.89 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.36 8.55 5.53 -40.82 -0.23 8.33 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.12 0.86 8.04 -52.49 -0.42 0.44 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 1.58 7.72 -52.49 -0.41 1.17 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -33.89 354.29 -8.52 -42.41 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.68 Total: 8.04 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.69 Total: -1.08 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.85 Total: -63.21 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.89 -8.52 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152522308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.732 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds