Wall clock time and date at job start Tue Mar 31 2020 07:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46904 * 110.99812 * 2 1 4 4 C 1.46895 * 111.00000 * 123.94862 * 2 1 3 5 5 H 1.08999 * 109.47320 * 299.99924 * 4 2 1 6 6 C 1.50700 * 109.47124 * 60.00417 * 4 2 1 7 7 O 1.21279 * 119.99825 * 19.99631 * 6 4 2 8 8 N 1.34777 * 120.00084 * 200.00012 * 6 4 2 9 9 C 1.46500 * 120.00010 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47155 * 179.97438 * 9 8 6 11 11 N 1.46496 * 109.47097 * 180.02562 * 10 9 8 12 12 C 1.36940 * 119.99878 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00068 * 359.97438 * 12 11 10 14 14 C 1.38821 * 119.99895 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99903 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99836 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47380 * 89.99819 * 16 14 12 18 18 H 1.48501 * 109.47156 * 209.99846 * 16 14 12 19 19 H 1.48504 * 109.47566 * 329.99891 * 16 14 12 20 20 C 1.50702 * 109.47470 * 180.02562 * 4 2 1 21 21 C 1.38234 * 120.00271 * 139.99840 * 20 4 2 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 4 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 319.97968 * 20 4 2 26 26 H 1.08993 * 109.47156 * 300.00382 * 1 2 3 27 27 H 1.08999 * 109.46490 * 60.00316 * 1 2 3 28 28 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47291 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47053 * 299.99715 * 3 2 1 31 31 H 1.08997 * 109.47523 * 59.99729 * 3 2 1 32 32 H 0.97001 * 120.00049 * 359.97438 * 8 6 4 33 33 H 1.08990 * 109.47545 * 300.00657 * 9 8 6 34 34 H 1.09008 * 109.46529 * 60.00462 * 9 8 6 35 35 H 1.09001 * 109.47282 * 300.00648 * 10 9 8 36 36 H 1.09000 * 109.46562 * 60.00832 * 10 9 8 37 37 H 0.96995 * 120.00235 * 0.02562 * 11 10 9 38 38 H 0.97000 * 119.99772 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.99769 * 359.97438 * 21 20 4 40 40 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00489 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 1 1.6460 -0.3199 2.0688 6 6 1.5124 -2.1907 1.0506 7 8 1.1214 -2.6348 -0.0080 8 7 1.5148 -2.9713 2.1493 9 6 1.0446 -4.3562 2.0648 10 6 1.1518 -5.0161 3.4411 11 7 0.6822 -6.4011 3.3565 12 6 0.6847 -7.1943 4.4727 13 1 1.0333 -6.7990 5.4153 14 6 0.2392 -8.5067 4.3927 15 7 0.2422 -9.2692 5.4654 16 14 -0.3630 -9.1907 2.7621 17 1 0.7773 -9.7948 2.0272 18 1 -1.3961 -10.2278 3.0117 19 1 -0.9490 -8.0934 1.9510 20 6 3.5020 -0.7429 1.1047 21 6 4.2171 -0.6062 2.2798 22 6 5.5989 -0.5857 2.2495 23 6 6.2657 -0.7025 1.0443 24 6 5.5507 -0.8403 -0.1307 25 6 4.1687 -0.8590 -0.1007 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.0851 1.3425 -0.0005 30 1 1.6460 1.8948 -0.8901 31 1 1.6460 1.8949 0.8899 32 1 1.8278 -2.6162 2.9959 33 1 0.0056 -4.3678 1.7358 34 1 1.6581 -4.9052 1.3503 35 1 2.1910 -5.0045 3.7696 36 1 0.5386 -4.4672 4.1558 37 1 0.3694 -6.7564 2.5098 38 1 -0.0695 -10.1861 5.4096 39 1 3.6961 -0.5153 3.2215 40 1 6.1576 -0.4793 3.1676 41 1 7.3453 -0.6820 1.0202 42 1 6.0716 -0.9311 -1.0724 43 1 3.6101 -0.9658 -1.0187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152522308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:48 Heat of formation + Delta-G solvation = -4.034023 kcal Electronic energy + Delta-G solvation = -23029.572663 eV Core-core repulsion = 19688.534525 eV Total energy + Delta-G solvation = -3341.038138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55320 -39.79665 -37.95769 -37.21890 -35.53983 -33.57341 -32.79646 -31.76821 -30.19545 -28.62233 -28.01291 -25.37145 -23.84563 -23.29554 -23.18992 -22.60197 -20.99281 -19.83860 -18.37577 -17.88713 -17.38692 -16.81670 -16.64524 -16.23819 -16.13109 -15.70764 -15.42497 -15.32185 -15.26204 -14.90222 -14.69455 -14.25008 -14.06062 -13.74464 -13.45558 -13.37993 -13.20153 -13.14485 -12.87708 -12.73021 -12.60665 -12.49725 -12.09632 -11.94233 -11.89471 -11.83571 -11.05976 -11.04525 -10.17193 -9.79740 -9.62724 -9.37602 -9.37153 -8.06085 -5.41424 0.33782 0.52393 1.38653 1.40265 1.47369 1.55836 1.92836 2.46007 2.77575 3.04334 3.25835 3.58633 3.68136 3.81829 3.91599 4.00877 4.14223 4.17457 4.20769 4.30615 4.33527 4.41445 4.52218 4.61365 4.65328 4.67446 4.73836 4.96356 5.01650 5.02008 5.05017 5.07590 5.18953 5.33855 5.55502 5.58496 5.64931 5.71522 5.87406 6.01144 6.10860 6.16921 6.50230 7.02214 7.18177 7.76692 7.94342 9.14737 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.003425 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.628124 B = 8174.401249 C = 8966.039674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.027 3.973 4 C 0.118 3.882 5 H 0.091 0.909 6 C 0.519 3.481 7 O -0.559 6.559 8 N -0.711 5.711 9 C 0.126 3.874 10 C 0.151 3.849 11 N -0.759 5.759 12 C -0.238 4.238 13 H 0.064 0.936 14 C -0.058 4.058 15 N -0.980 5.980 16 Si 0.951 3.049 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.255 1.255 20 C -0.095 4.095 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.134 4.134 25 C -0.100 4.100 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.414 0.586 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.366 0.634 38 H 0.260 0.740 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.098 26.685 -10.147 29.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.120 4.120 4 C 0.006 3.994 5 H 0.108 0.892 6 C 0.305 3.695 7 O -0.436 6.436 8 N -0.364 5.364 9 C 0.001 3.999 10 C 0.025 3.975 11 N -0.405 5.405 12 C -0.369 4.369 13 H 0.082 0.918 14 C -0.250 4.250 15 N -0.630 5.630 16 Si 0.778 3.222 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.179 1.179 20 C -0.096 4.096 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.152 4.152 25 C -0.119 4.119 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.199 0.801 38 H 0.068 0.932 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.990 26.104 -11.117 29.763 hybrid contribution -0.699 -0.564 0.355 0.966 sum 8.290 25.541 -10.762 28.929 Atomic orbital electron populations 1.22453 0.86232 1.02094 1.01776 1.61644 1.08756 1.14786 1.41171 1.22469 1.01138 0.86638 1.01765 1.20411 0.92946 0.90611 0.95408 0.89166 1.20749 0.77246 0.88212 0.83287 1.90685 1.47765 1.75321 1.29880 1.45710 1.65875 1.12207 1.12621 1.21202 0.99480 0.81749 0.97491 1.20818 0.98206 0.84085 0.94407 1.42554 1.79151 1.10262 1.08555 1.19012 1.35256 0.93125 0.89491 0.91782 1.25467 1.02161 0.96888 1.00518 1.69863 1.54793 1.08383 1.29914 0.85471 0.78153 0.78373 0.80193 1.20400 1.21918 1.17925 1.19373 0.92153 1.03474 0.94589 1.21292 0.94878 0.99411 0.97557 1.21434 0.94179 0.99688 0.99002 1.21531 1.01150 0.98520 0.92455 1.21413 0.93742 1.00468 0.99535 1.21106 0.94713 0.98155 0.97897 0.94310 0.89915 0.92767 0.91015 0.90092 0.94395 0.74905 0.92057 0.92464 0.94157 0.93972 0.80078 0.93151 0.83834 0.83655 0.84009 0.84790 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.24 127.69 1.18 1.62 16 2 N -0.54 -11.02 3.94 -932.20 -3.67 -14.69 16 3 C 0.03 0.40 9.19 127.69 1.17 1.58 16 4 C 0.12 2.38 2.08 43.42 0.09 2.47 16 5 H 0.09 1.40 8.00 -2.39 -0.02 1.38 16 6 C 0.52 14.06 6.19 87.66 0.54 14.60 16 7 O -0.56 -19.80 15.03 -3.03 -0.05 -19.85 16 8 N -0.71 -17.72 5.56 -463.06 -2.57 -20.29 16 9 C 0.13 3.93 5.79 86.38 0.50 4.43 16 10 C 0.15 5.43 6.37 86.38 0.55 5.98 16 11 N -0.76 -35.37 5.41 -343.45 -1.86 -37.23 16 12 C -0.24 -13.49 10.47 84.04 0.88 -12.61 16 13 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 14 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 15 N -0.98 -62.45 13.97 21.65 0.30 -62.14 16 16 Si 0.95 45.80 27.74 68.60 1.90 47.70 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 20 C -0.10 -1.82 3.70 -19.87 -0.07 -1.90 16 21 C -0.11 -1.73 9.67 22.27 0.22 -1.52 16 22 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 23 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.10 -2.10 8.10 22.27 0.18 -1.92 16 26 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.39 6.01 -2.39 -0.01 1.37 16 29 H 0.07 1.11 6.02 -2.39 -0.01 1.09 16 30 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.41 7.78 8.47 -92.71 -0.79 6.99 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.37 16.60 5.53 -92.71 -0.51 16.09 16 38 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.14 1.51 8.04 -2.91 -0.02 1.48 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.12 2.79 7.72 -2.91 -0.02 2.76 16 Total: -1.00 -73.52 354.29 0.09 -73.44 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.35 Total: 28.49 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.38 Total: 4.57 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -7.80 Total: -134.35 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Total: -73.52 0.09 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152522308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.403 kcal (2) G-P(sol) polarization free energy of solvation -73.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds