Wall clock time and date at job start Tue Mar 31 2020 07:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 H 1.09002 * 109.47061 * 300.00284 * 4 2 1 6 6 C 1.50699 * 109.47425 * 179.97438 * 4 2 1 7 7 O 1.21279 * 120.00031 * 340.00608 * 6 4 2 8 8 N 1.34775 * 119.99969 * 159.99727 * 6 4 2 9 9 C 1.46501 * 119.99829 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.46989 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.47135 * 180.02562 * 10 9 8 12 12 C 1.36934 * 120.00103 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00181 * 0.02562 * 12 11 10 14 14 C 1.38811 * 120.00209 * 179.97438 * 12 11 10 15 15 N 1.31620 * 120.00045 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00098 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47101 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47007 * 120.00512 * 16 14 12 19 19 H 1.48498 * 109.47437 * 240.00392 * 16 14 12 20 20 C 1.50704 * 109.46532 * 59.99909 * 4 2 1 21 21 C 1.38232 * 120.00232 * 39.73146 * 20 4 2 22 22 C 1.38233 * 119.99917 * 179.80458 * 21 20 4 23 23 C 1.38228 * 120.00379 * 0.39795 * 22 21 20 24 24 C 1.38243 * 119.99711 * 359.85642 * 23 22 21 25 25 C 1.38233 * 119.99907 * 359.95563 * 24 23 22 26 26 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 27 27 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 28 28 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46903 * 59.99922 * 3 2 1 30 30 H 1.08998 * 109.46795 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47087 * 299.99901 * 3 2 1 32 32 H 0.96996 * 119.99699 * 0.02562 * 8 6 4 33 33 H 1.08995 * 109.47216 * 300.00366 * 9 8 6 34 34 H 1.09004 * 109.46636 * 60.00949 * 9 8 6 35 35 H 1.09004 * 109.46886 * 300.00578 * 10 9 8 36 36 H 1.09001 * 109.47235 * 60.00214 * 10 9 8 37 37 H 0.97008 * 120.00032 * 0.02562 * 11 10 9 38 38 H 0.96998 * 120.00080 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.99761 * 359.97438 * 21 20 4 40 40 H 1.08002 * 119.99738 * 180.22611 * 22 21 20 41 41 H 1.07997 * 120.00458 * 179.83082 * 23 22 21 42 42 H 1.07996 * 120.00165 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99788 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 1 1.6460 -0.3200 2.0688 6 6 3.5020 -0.7440 1.1038 7 8 4.0817 -0.4821 0.0712 8 7 4.2051 -1.0152 2.2212 9 6 5.6696 -0.9944 2.1882 10 6 6.2158 -1.3347 3.5763 11 7 7.6803 -1.3134 3.5435 12 6 8.3946 -1.5888 4.6788 13 1 7.8784 -1.8222 5.5984 14 6 9.7822 -1.5690 4.6477 15 7 10.4114 -1.2851 3.5270 16 14 10.7567 -1.9455 6.1963 17 1 9.8206 -2.2317 7.3128 18 1 11.6225 -3.1289 5.9609 19 1 11.6020 -0.7756 6.5459 20 6 1.5123 -2.1907 1.0504 21 6 1.4549 -2.8274 -0.1752 22 6 1.0155 -4.1356 -0.2546 23 6 0.6256 -4.8045 0.8906 24 6 0.6780 -4.1661 2.1156 25 6 1.1211 -2.8591 2.1955 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6459 1.8948 0.8900 30 1 3.0850 1.3424 -0.0005 31 1 1.6459 1.8948 -0.8900 32 1 3.7414 -1.2248 3.0470 33 1 6.0272 -1.7293 1.4672 34 1 6.0123 -0.0018 1.8959 35 1 5.8580 -0.6001 4.2977 36 1 5.8730 -2.3274 3.8683 37 1 8.1439 -1.1033 2.7177 38 1 11.3810 -1.2709 3.5053 39 1 1.7561 -2.3036 -1.0704 40 1 0.9742 -4.6343 -1.2117 41 1 0.2797 -5.8257 0.8282 42 1 0.3730 -4.6884 3.0103 43 1 1.1624 -2.3605 3.1526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152522309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:55 Heat of formation + Delta-G solvation = 16.603093 kcal Electronic energy + Delta-G solvation = -22962.518009 eV Core-core repulsion = 19622.374763 eV Total energy + Delta-G solvation = -3340.143245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.56449 -38.85384 -36.94050 -35.55260 -33.86238 -32.17712 -31.13033 -31.03467 -28.56352 -27.57296 -26.89259 -23.78742 -23.01804 -22.50304 -21.84755 -21.35691 -19.92298 -17.50404 -17.22465 -17.00135 -16.19109 -15.86701 -15.28707 -15.02848 -14.60943 -14.55135 -14.48094 -14.28818 -13.73466 -13.51445 -13.24217 -13.14560 -12.95021 -12.79036 -12.51241 -12.44144 -12.09385 -11.77793 -11.37830 -11.17481 -11.14191 -11.11571 -10.82650 -10.81383 -10.09738 -9.93451 -9.74224 -9.06927 -8.98666 -8.85230 -8.79963 -8.56747 -6.99723 -5.79974 -3.10722 1.09214 1.26032 2.69247 3.06263 3.41789 3.46930 3.49589 3.54344 3.90740 4.45176 4.57367 4.67518 4.78368 4.84753 4.90794 4.97148 5.08728 5.15350 5.30692 5.41037 5.42339 5.46494 5.49964 5.53686 5.66041 5.74839 5.77941 5.90701 5.93102 5.96600 6.14733 6.26207 6.35912 6.36960 6.48734 6.66606 6.70093 6.75877 6.79283 6.83306 7.61538 7.65969 8.32286 8.37726 9.48915 10.03660 10.38464 11.42667 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.003201 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.010353 B = 8745.029784 C = 9625.470912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.520 5.520 3 C 0.015 3.985 4 C 0.109 3.891 5 H 0.068 0.932 6 C 0.519 3.481 7 O -0.518 6.518 8 N -0.721 5.721 9 C 0.113 3.887 10 C 0.145 3.855 11 N -0.729 5.729 12 C -0.244 4.244 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.930 5.930 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.083 4.083 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.111 4.111 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.347 -1.247 -5.455 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.244 5.244 3 C -0.133 4.133 4 C -0.003 4.003 5 H 0.085 0.915 6 C 0.303 3.697 7 O -0.393 6.393 8 N -0.372 5.372 9 C -0.011 4.011 10 C 0.017 3.983 11 N -0.375 5.375 12 C -0.375 4.375 13 H 0.090 0.910 14 C -0.208 4.208 15 N -0.578 5.578 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.084 4.084 21 C -0.100 4.100 22 C -0.143 4.143 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.130 4.130 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -24.692 -1.303 -6.476 25.560 hybrid contribution 0.267 0.129 1.772 1.797 sum -24.425 -1.174 -4.704 24.901 Atomic orbital electron populations 1.22457 0.86646 1.02551 1.00785 1.61694 1.07680 1.14325 1.40713 1.22595 1.02922 0.87343 1.00413 1.20475 0.92684 0.92801 0.94306 0.91453 1.20104 0.88518 0.77236 0.83816 1.90700 1.71054 1.46979 1.30558 1.45911 1.07981 1.71169 1.12183 1.21576 0.77608 1.02352 0.99546 1.20750 0.87028 0.98049 0.92481 1.42196 0.98681 1.84852 1.11724 1.19235 0.88800 1.40012 0.89409 0.90995 1.24781 0.96458 1.02341 0.97260 1.69678 1.07781 1.55210 1.25155 0.86083 0.80071 0.77540 0.82256 1.20510 1.21760 1.21769 1.19366 1.00989 0.93824 0.94211 1.21142 0.96774 0.94150 0.97940 1.21212 0.99650 0.94797 0.98621 1.21207 0.99583 0.99818 0.92818 1.21077 1.00346 0.94713 0.97852 1.21015 0.99181 0.95190 0.97565 0.90924 0.95615 0.90925 0.95922 0.89393 0.90956 0.76880 0.91254 0.91256 0.95865 0.95792 0.77995 0.93403 0.84758 0.85959 0.86138 0.85904 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.26 60.07 0.56 0.76 16 2 N -0.52 -5.85 3.93 -245.99 -0.97 -6.82 16 3 C 0.01 0.17 9.19 60.07 0.55 0.72 16 4 C 0.11 1.24 2.08 -70.02 -0.15 1.10 16 5 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 6 C 0.52 7.61 6.19 -10.99 -0.07 7.54 16 7 O -0.52 -9.50 14.71 5.56 0.08 -9.41 16 8 N -0.72 -10.12 5.56 -60.29 -0.33 -10.45 16 9 C 0.11 1.97 5.79 -4.04 -0.02 1.94 16 10 C 0.15 2.86 6.37 -4.04 -0.03 2.84 16 11 N -0.73 -18.66 5.60 -59.91 -0.34 -18.99 16 12 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 13 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 15 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 16 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C -0.08 -0.90 3.73 -104.62 -0.39 -1.29 16 21 C -0.08 -0.92 8.41 -39.59 -0.33 -1.26 16 22 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.11 -1.04 9.67 -39.58 -0.38 -1.43 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.63 6.36 -51.93 -0.33 0.30 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 1.21 5.68 -51.93 -0.30 0.91 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.40 4.49 8.47 -40.82 -0.35 4.15 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.39 10.47 7.67 -40.82 -0.31 10.15 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.13 1.65 7.71 -52.49 -0.40 1.24 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.90 8.04 -52.49 -0.42 0.48 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -33.13 357.43 -8.89 -42.02 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.72 Total: 9.61 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.70 Total: -1.04 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.91 Total: -63.88 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.13 -8.89 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152522309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.625 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds