Wall clock time and date at job start Tue Mar 31 2020 07:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 H 1.09002 * 109.47061 * 300.00284 * 4 2 1 6 6 C 1.50699 * 109.47425 * 179.97438 * 4 2 1 7 7 O 1.21279 * 120.00031 * 340.00608 * 6 4 2 8 8 N 1.34775 * 119.99969 * 159.99727 * 6 4 2 9 9 C 1.46501 * 119.99829 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.46989 * 180.02562 * 9 8 6 11 11 N 1.46496 * 109.47135 * 180.02562 * 10 9 8 12 12 C 1.36934 * 120.00103 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00181 * 0.02562 * 12 11 10 14 14 C 1.38811 * 120.00209 * 179.97438 * 12 11 10 15 15 N 1.31620 * 120.00045 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00098 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47101 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47007 * 120.00512 * 16 14 12 19 19 H 1.48498 * 109.47437 * 240.00392 * 16 14 12 20 20 C 1.50704 * 109.46532 * 59.99909 * 4 2 1 21 21 C 1.38232 * 120.00232 * 39.73146 * 20 4 2 22 22 C 1.38233 * 119.99917 * 179.80458 * 21 20 4 23 23 C 1.38228 * 120.00379 * 0.39795 * 22 21 20 24 24 C 1.38243 * 119.99711 * 359.85642 * 23 22 21 25 25 C 1.38233 * 119.99907 * 359.95563 * 24 23 22 26 26 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 27 27 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 28 28 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46903 * 59.99922 * 3 2 1 30 30 H 1.08998 * 109.46795 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47087 * 299.99901 * 3 2 1 32 32 H 0.96996 * 119.99699 * 0.02562 * 8 6 4 33 33 H 1.08995 * 109.47216 * 300.00366 * 9 8 6 34 34 H 1.09004 * 109.46636 * 60.00949 * 9 8 6 35 35 H 1.09004 * 109.46886 * 300.00578 * 10 9 8 36 36 H 1.09001 * 109.47235 * 60.00214 * 10 9 8 37 37 H 0.97008 * 120.00032 * 0.02562 * 11 10 9 38 38 H 0.96998 * 120.00080 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.99761 * 359.97438 * 21 20 4 40 40 H 1.08002 * 119.99738 * 180.22611 * 22 21 20 41 41 H 1.07997 * 120.00458 * 179.83082 * 23 22 21 42 42 H 1.07996 * 120.00165 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99788 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 1 1.6460 -0.3200 2.0688 6 6 3.5020 -0.7440 1.1038 7 8 4.0817 -0.4821 0.0712 8 7 4.2051 -1.0152 2.2212 9 6 5.6696 -0.9944 2.1882 10 6 6.2158 -1.3347 3.5763 11 7 7.6803 -1.3134 3.5435 12 6 8.3946 -1.5888 4.6788 13 1 7.8784 -1.8222 5.5984 14 6 9.7822 -1.5690 4.6477 15 7 10.4114 -1.2851 3.5270 16 14 10.7567 -1.9455 6.1963 17 1 9.8206 -2.2317 7.3128 18 1 11.6225 -3.1289 5.9609 19 1 11.6020 -0.7756 6.5459 20 6 1.5123 -2.1907 1.0504 21 6 1.4549 -2.8274 -0.1752 22 6 1.0155 -4.1356 -0.2546 23 6 0.6256 -4.8045 0.8906 24 6 0.6780 -4.1661 2.1156 25 6 1.1211 -2.8591 2.1955 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6459 1.8948 0.8900 30 1 3.0850 1.3424 -0.0005 31 1 1.6459 1.8948 -0.8900 32 1 3.7414 -1.2248 3.0470 33 1 6.0272 -1.7293 1.4672 34 1 6.0123 -0.0018 1.8959 35 1 5.8580 -0.6001 4.2977 36 1 5.8730 -2.3274 3.8683 37 1 8.1439 -1.1033 2.7177 38 1 11.3810 -1.2709 3.5053 39 1 1.7561 -2.3036 -1.0704 40 1 0.9742 -4.6343 -1.2117 41 1 0.2797 -5.8257 0.8282 42 1 0.3730 -4.6884 3.0103 43 1 1.1624 -2.3605 3.1526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152522309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:54 Heat of formation + Delta-G solvation = -6.794323 kcal Electronic energy + Delta-G solvation = -22963.532597 eV Core-core repulsion = 19622.374763 eV Total energy + Delta-G solvation = -3341.157833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55980 -39.78113 -37.91885 -37.10581 -35.51518 -33.37674 -32.67326 -31.75432 -29.90066 -28.53681 -27.97709 -25.61288 -23.89426 -23.30411 -23.17768 -22.58675 -20.98746 -19.33379 -18.39134 -17.88767 -17.31005 -16.80028 -16.65886 -16.23839 -16.14317 -15.64233 -15.36989 -15.27504 -15.10082 -14.92690 -14.74564 -14.23304 -14.04181 -13.71360 -13.34787 -13.18707 -13.12312 -13.05426 -12.84688 -12.71131 -12.51942 -12.45416 -12.05057 -11.94772 -11.89000 -11.85033 -11.03798 -11.00913 -10.16444 -9.79070 -9.62585 -9.37064 -9.07568 -7.97324 -5.28997 0.34605 0.53362 1.48485 1.49956 1.55361 1.60080 1.93788 2.56634 2.77965 3.05935 3.37138 3.61492 3.74128 3.91485 4.00572 4.15002 4.15903 4.19392 4.21575 4.31226 4.34596 4.41406 4.55707 4.61902 4.65865 4.67882 4.74680 4.97599 5.01372 5.04555 5.06437 5.11280 5.19768 5.35489 5.48675 5.56107 5.59786 5.65484 5.87772 6.02252 6.11797 6.23345 6.50852 7.18650 7.29571 8.00876 8.24114 9.26591 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.003201 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.010353 B = 8745.029784 C = 9625.470912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.539 5.539 3 C 0.019 3.981 4 C 0.119 3.881 5 H 0.092 0.908 6 C 0.517 3.483 7 O -0.561 6.561 8 N -0.709 5.709 9 C 0.131 3.869 10 C 0.150 3.850 11 N -0.747 5.747 12 C -0.247 4.247 13 H 0.084 0.916 14 C -0.077 4.077 15 N -0.971 5.971 16 Si 0.979 3.021 17 H -0.261 1.261 18 H -0.294 1.294 19 H -0.293 1.293 20 C -0.095 4.095 21 C -0.100 4.100 22 C -0.134 4.134 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.113 4.113 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.414 0.586 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.373 0.627 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.590 -2.049 -3.389 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.264 5.264 3 C -0.129 4.129 4 C 0.007 3.993 5 H 0.109 0.891 6 C 0.303 3.697 7 O -0.438 6.438 8 N -0.362 5.362 9 C 0.006 3.994 10 C 0.023 3.977 11 N -0.391 5.391 12 C -0.379 4.379 13 H 0.102 0.898 14 C -0.269 4.269 15 N -0.621 5.621 16 Si 0.808 3.192 17 H -0.185 1.185 18 H -0.221 1.221 19 H -0.220 1.220 20 C -0.096 4.096 21 C -0.119 4.119 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.251 0.749 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.205 0.795 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -27.015 -2.115 -4.370 27.447 hybrid contribution 0.859 0.350 1.083 1.425 sum -26.156 -1.766 -3.287 26.421 Atomic orbital electron populations 1.22453 0.84827 1.02799 1.01815 1.61654 1.09287 1.14271 1.41157 1.22505 1.00943 0.87780 1.01669 1.20410 0.89687 0.93696 0.95472 0.89070 1.20796 0.90089 0.75819 0.82956 1.90684 1.72249 1.48730 1.32162 1.45714 1.06408 1.70981 1.13112 1.21124 0.79709 1.00806 0.97744 1.20834 0.84037 0.98916 0.93868 1.42437 1.01063 1.84871 1.10692 1.19690 0.89340 1.38496 0.90358 0.89838 1.25677 0.97723 1.03129 1.00382 1.69846 1.07662 1.57157 1.27467 0.84994 0.78478 0.76757 0.79011 1.18512 1.22082 1.22031 1.19384 1.02000 0.93541 0.94675 1.21102 0.98103 0.95002 0.97662 1.21411 0.99614 0.94380 0.99815 1.21533 0.98777 1.00819 0.92535 1.21440 0.99502 0.94614 0.98711 1.21298 0.98445 0.95512 0.97873 0.90073 0.94318 0.91050 0.94436 0.92529 0.89940 0.74906 0.93248 0.92713 0.94309 0.94575 0.79494 0.93903 0.86790 0.84844 0.83948 0.83512 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.26 127.69 1.18 1.63 16 2 N -0.54 -11.75 3.93 -932.18 -3.66 -15.42 16 3 C 0.02 0.41 9.19 127.69 1.17 1.58 16 4 C 0.12 2.56 2.08 43.42 0.09 2.65 16 5 H 0.09 1.51 8.00 -2.39 -0.02 1.49 16 6 C 0.52 15.10 6.19 87.66 0.54 15.64 16 7 O -0.56 -21.32 14.71 -3.03 -0.04 -21.36 16 8 N -0.71 -19.27 5.56 -463.06 -2.57 -21.85 16 9 C 0.13 4.59 5.79 86.38 0.50 5.09 16 10 C 0.15 5.77 6.37 86.38 0.55 6.32 16 11 N -0.75 -38.30 5.60 -343.45 -1.92 -40.22 16 12 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 13 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 14 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 15 N -0.97 -60.18 13.06 21.65 0.28 -59.89 16 16 Si 0.98 45.75 29.55 68.60 2.03 47.77 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 19 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 20 C -0.10 -1.94 3.73 -19.86 -0.07 -2.01 16 21 C -0.10 -2.24 8.41 22.27 0.19 -2.05 16 22 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 23 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 24 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 25 C -0.11 -1.81 9.67 22.27 0.22 -1.59 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 1.14 6.36 -2.38 -0.02 1.13 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.60 5.68 -2.39 -0.01 1.59 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.41 8.42 8.47 -92.71 -0.79 7.64 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 2.08 8.14 -2.38 -0.02 2.07 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.37 20.76 7.67 -92.70 -0.71 20.05 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.11 2.94 7.71 -2.91 -0.02 2.92 16 40 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.14 1.58 8.04 -2.91 -0.02 1.55 16 Total: -1.00 -72.22 357.43 -0.04 -72.25 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.49 Total: 33.76 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.35 Total: 4.95 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -7.88 Total: -137.38 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.04 Total: -21.36 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -72.22 -0.04 -72.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152522309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.459 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds