Wall clock time and date at job start Tue Mar 31 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47273 * 2 1 4 4 C 1.36936 * 120.00251 * 272.96046 * 3 2 1 5 5 H 1.08000 * 120.00410 * 175.15317 * 4 3 2 6 6 C 1.38822 * 119.99713 * 355.14851 * 4 3 2 7 7 N 1.31616 * 119.99972 * 29.42030 * 6 4 3 8 8 Si 1.86797 * 119.99882 * 209.42322 * 6 4 3 9 9 H 1.48491 * 109.47535 * 84.98982 * 8 6 4 10 10 H 1.48501 * 109.47208 * 204.99454 * 8 6 4 11 11 H 1.48505 * 109.47143 * 324.99036 * 8 6 4 12 12 C 1.46497 * 119.99921 * 92.95457 * 3 2 1 13 13 H 1.09004 * 109.47027 * 180.02562 * 12 3 2 14 14 C 1.53004 * 109.47198 * 60.00624 * 12 3 2 15 15 C 1.53000 * 109.47281 * 300.00373 * 12 3 2 16 16 N 1.46503 * 109.47157 * 305.00047 * 15 12 3 17 17 C 1.34770 * 119.99849 * 180.02562 * 16 15 12 18 18 O 1.21554 * 120.00368 * 359.97438 * 17 16 15 19 19 C 1.47850 * 119.99681 * 179.97438 * 17 16 15 20 20 C 1.39554 * 120.55951 * 353.83267 * 19 17 16 21 21 N 1.31667 * 120.56355 * 179.75426 * 20 19 17 22 22 C 1.31952 * 121.87728 * 0.53352 * 21 20 19 23 23 C 1.38301 * 121.08415 * 359.73015 * 22 21 20 24 24 C 1.38394 * 119.30703 * 359.97438 * 23 22 21 25 25 C 1.50699 * 120.86094 * 180.02562 * 24 23 22 26 26 H 1.08999 * 109.47208 * 300.00137 * 1 2 3 27 27 H 1.09004 * 109.46737 * 60.00041 * 1 2 3 28 28 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47154 * 240.00621 * 2 1 3 30 30 H 1.08994 * 109.47468 * 119.99949 * 2 1 3 31 31 H 0.96997 * 120.00357 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47447 * 59.99483 * 14 12 3 33 33 H 1.08995 * 109.47340 * 180.02562 * 14 12 3 34 34 H 1.09004 * 109.46654 * 299.99643 * 14 12 3 35 35 H 1.09000 * 109.46814 * 64.99859 * 15 12 3 36 36 H 1.08996 * 109.46890 * 184.99855 * 15 12 3 37 37 H 0.96999 * 119.99906 * 359.97438 * 16 15 12 38 38 H 1.07998 * 119.71980 * 0.02562 * 20 19 17 39 39 H 1.08007 * 119.45951 * 179.74604 * 22 21 20 40 40 H 1.08002 * 120.34834 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47095 * 262.70688 * 25 24 23 42 42 H 1.09004 * 109.46894 * 22.70853 * 25 24 23 43 43 H 1.09002 * 109.47273 * 142.70744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1889 2.0472 -1.1843 5 1 2.4735 3.0891 -1.1819 6 6 1.9960 1.3831 -2.3880 7 7 1.1421 0.3841 -2.4590 8 14 2.9485 1.9074 -3.9070 9 1 4.2749 1.2399 -3.9145 10 1 2.1919 1.5190 -5.1243 11 1 3.1359 3.3805 -3.8897 12 6 2.3242 2.0500 1.2670 13 1 2.6713 3.0640 1.0681 14 6 3.4163 1.2719 2.0038 15 6 1.0638 2.1036 2.1327 16 7 -0.0183 2.7436 1.3807 17 6 -1.2309 2.9015 1.9472 18 8 -1.4269 2.5125 3.0820 19 6 -2.3228 3.5480 1.1884 20 6 -2.0786 4.1133 -0.0639 21 7 -3.0520 4.6848 -0.7418 22 6 -4.2818 4.7565 -0.2690 23 6 -4.6039 4.2250 0.9665 24 6 -3.6179 3.6081 1.7165 25 6 -3.9302 3.0166 3.0669 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.0071 -0.0797 -3.3001 32 1 4.3142 1.2337 1.3871 33 1 3.6436 1.7692 2.9467 34 1 3.0688 0.2581 2.2027 35 1 0.7671 1.0908 2.4054 36 1 1.2677 2.6782 3.0362 37 1 0.1381 3.0544 0.4752 38 1 -1.0837 4.0779 -0.4825 39 1 -5.0496 5.2379 -0.8567 40 1 -5.6146 4.2900 1.3417 41 1 -3.6593 3.7283 3.8467 42 1 -4.9960 2.7969 3.1296 43 1 -3.3612 2.0966 3.2010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152533711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:40 Heat of formation + Delta-G solvation = 30.014424 kcal Electronic energy + Delta-G solvation = -24362.430432 eV Core-core repulsion = 21022.868746 eV Total energy + Delta-G solvation = -3339.561686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53960 -38.77215 -37.02121 -34.25828 -33.46793 -32.42468 -31.14050 -30.16212 -28.47378 -27.90301 -25.84096 -24.03454 -23.70253 -22.16627 -21.65553 -20.25927 -19.12590 -17.40726 -16.98480 -16.55601 -16.13963 -15.42008 -15.20815 -14.81662 -14.66290 -14.08955 -13.63655 -13.58468 -12.95780 -12.75548 -12.66713 -12.61137 -12.45916 -12.41705 -12.12622 -11.91448 -11.82914 -11.46589 -11.10725 -10.79231 -10.74003 -10.61745 -10.30091 -9.85492 -9.79996 -9.64134 -9.47653 -9.32179 -9.15684 -9.12033 -8.47033 -8.25788 -7.03129 -5.85625 -3.08676 0.78679 1.26066 3.15516 3.38071 3.46775 3.48736 3.60904 3.98587 4.42842 4.45500 4.71772 4.76943 4.97602 5.15288 5.20554 5.37928 5.43114 5.51581 5.59088 5.69745 5.78386 5.88476 5.91336 6.04896 6.10509 6.15615 6.27042 6.30638 6.45763 6.62403 6.66434 6.69726 6.83527 6.97565 6.99197 7.11754 7.20818 7.64656 7.82813 7.94933 8.02776 8.08340 8.30378 8.61317 9.18660 9.82580 10.27440 11.17286 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.005767 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.104866 B = 4853.709479 C = 6001.331706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.162 3.838 3 N -0.594 5.594 4 C -0.264 4.264 5 H 0.076 0.924 6 C 0.010 3.990 7 N -0.882 5.882 8 Si 0.883 3.117 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.160 3.840 13 H 0.068 0.932 14 C -0.157 4.157 15 C 0.105 3.895 16 N -0.693 5.693 17 C 0.558 3.442 18 O -0.550 6.550 19 C -0.186 4.186 20 C 0.147 3.853 21 N -0.491 5.491 22 C 0.118 3.882 23 C -0.191 4.191 24 C 0.014 3.986 25 C -0.119 4.119 26 H 0.020 0.980 27 H 0.083 0.917 28 H 0.014 0.986 29 H 0.090 0.910 30 H 0.005 0.995 31 H 0.252 0.748 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.411 0.589 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 5.563 7.981 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 N -0.316 5.316 4 C -0.392 4.392 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.526 5.526 8 Si 0.713 3.287 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.051 3.949 13 H 0.086 0.914 14 C -0.217 4.217 15 C -0.021 4.021 16 N -0.344 5.344 17 C 0.344 3.656 18 O -0.431 6.431 19 C -0.191 4.191 20 C -0.011 4.011 21 N -0.200 5.200 22 C -0.039 4.039 23 C -0.211 4.211 24 C 0.005 3.995 25 C -0.175 4.175 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.033 0.967 29 H 0.108 0.892 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.249 0.751 38 H 0.181 0.819 39 H 0.174 0.826 40 H 0.155 0.845 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.208 5.536 7.789 11.969 hybrid contribution 0.266 -0.053 -0.626 0.682 sum -6.942 5.483 7.163 11.382 Atomic orbital electron populations 1.22388 0.99322 0.97978 1.01070 1.20982 0.92335 0.84544 0.98358 1.44232 1.75920 1.11271 1.00180 1.19215 1.41621 0.95051 0.83317 0.90644 1.24700 0.98764 0.98138 0.97260 1.70248 1.31678 1.25533 1.25149 0.86584 0.80955 0.78027 0.83129 1.21718 1.22146 1.20770 1.20561 0.91168 0.96437 0.86711 0.91360 1.22177 0.99761 1.00619 0.99154 1.22061 0.88313 0.97374 0.94318 1.45835 1.10154 1.59269 1.19113 1.17951 0.82445 0.79228 0.85992 1.90673 1.82012 1.51802 1.18580 1.20972 0.95297 1.05111 0.97755 1.23146 0.98797 0.89886 0.89301 1.67725 1.00722 1.16632 1.34940 1.22934 0.93717 0.94270 0.92937 1.22009 1.00345 1.01999 0.96725 1.20464 0.91389 0.91456 0.96149 1.21041 1.01276 1.03174 0.91987 0.96132 0.89858 0.96738 0.89189 0.97676 0.93721 0.92241 0.93658 0.92959 0.91801 0.92653 0.75132 0.81926 0.82582 0.84493 0.90286 0.92213 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.24 37.16 0.34 -2.99 16 2 C 0.16 3.68 5.03 -4.04 -0.02 3.66 16 3 N -0.59 -12.93 1.92 -165.66 -0.32 -13.25 16 4 C -0.26 -6.38 9.41 -15.06 -0.14 -6.52 16 5 H 0.08 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.01 0.24 5.02 -17.43 -0.09 0.16 16 7 N -0.88 -23.16 8.40 55.49 0.47 -22.69 16 8 Si 0.88 20.49 29.64 -169.99 -5.04 15.45 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.16 2.89 2.87 -67.93 -0.19 2.70 16 13 H 0.07 1.21 7.78 -51.93 -0.40 0.81 16 14 C -0.16 -2.53 9.18 37.16 0.34 -2.18 16 15 C 0.11 1.83 4.31 -4.04 -0.02 1.81 16 16 N -0.69 -12.22 3.94 -61.25 -0.24 -12.46 16 17 C 0.56 9.88 7.47 -12.33 -0.09 9.79 16 18 O -0.55 -10.58 13.53 5.32 0.07 -10.50 16 19 C -0.19 -3.00 5.89 -104.82 -0.62 -3.61 16 20 C 0.15 2.36 10.70 -17.13 -0.18 2.17 16 21 N -0.49 -7.62 10.35 -12.91 -0.13 -7.76 16 22 C 0.12 1.46 11.17 -17.48 -0.20 1.26 16 23 C -0.19 -2.23 9.78 -39.50 -0.39 -2.62 16 24 C 0.01 0.20 5.95 -103.91 -0.62 -0.42 16 25 C -0.12 -1.51 8.81 36.01 0.32 -1.20 16 26 H 0.02 0.43 4.74 -51.93 -0.25 0.19 16 27 H 0.08 2.10 6.45 -51.93 -0.33 1.77 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 2.32 5.71 -51.93 -0.30 2.02 16 30 H 0.00 0.11 6.43 -51.93 -0.33 -0.23 16 31 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 35 H 0.06 1.21 6.84 -51.93 -0.36 0.85 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.41 7.49 6.00 -40.82 -0.24 7.25 16 38 H 0.16 2.58 6.47 -52.49 -0.34 2.24 16 39 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 43 H 0.10 1.50 6.03 -51.93 -0.31 1.19 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -27.71 338.02 -7.79 -35.50 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.14 Total: 8.62 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.55 Total: 2.00 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.23 Total: -56.16 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.04 Total: 15.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.71 -7.79 -35.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152533711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.511 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds