Wall clock time and date at job start Tue Mar 31 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47273 * 2 1 4 4 C 1.36936 * 120.00251 * 272.96046 * 3 2 1 5 5 H 1.08000 * 120.00410 * 175.15317 * 4 3 2 6 6 C 1.38822 * 119.99713 * 355.14851 * 4 3 2 7 7 N 1.31616 * 119.99972 * 29.42030 * 6 4 3 8 8 Si 1.86797 * 119.99882 * 209.42322 * 6 4 3 9 9 H 1.48491 * 109.47535 * 84.98982 * 8 6 4 10 10 H 1.48501 * 109.47208 * 204.99454 * 8 6 4 11 11 H 1.48505 * 109.47143 * 324.99036 * 8 6 4 12 12 C 1.46497 * 119.99921 * 92.95457 * 3 2 1 13 13 H 1.09004 * 109.47027 * 180.02562 * 12 3 2 14 14 C 1.53004 * 109.47198 * 60.00624 * 12 3 2 15 15 C 1.53000 * 109.47281 * 300.00373 * 12 3 2 16 16 N 1.46503 * 109.47157 * 305.00047 * 15 12 3 17 17 C 1.34770 * 119.99849 * 180.02562 * 16 15 12 18 18 O 1.21554 * 120.00368 * 359.97438 * 17 16 15 19 19 C 1.47850 * 119.99681 * 179.97438 * 17 16 15 20 20 C 1.39554 * 120.55951 * 353.83267 * 19 17 16 21 21 N 1.31667 * 120.56355 * 179.75426 * 20 19 17 22 22 C 1.31952 * 121.87728 * 0.53352 * 21 20 19 23 23 C 1.38301 * 121.08415 * 359.73015 * 22 21 20 24 24 C 1.38394 * 119.30703 * 359.97438 * 23 22 21 25 25 C 1.50699 * 120.86094 * 180.02562 * 24 23 22 26 26 H 1.08999 * 109.47208 * 300.00137 * 1 2 3 27 27 H 1.09004 * 109.46737 * 60.00041 * 1 2 3 28 28 H 1.08996 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47154 * 240.00621 * 2 1 3 30 30 H 1.08994 * 109.47468 * 119.99949 * 2 1 3 31 31 H 0.96997 * 120.00357 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47447 * 59.99483 * 14 12 3 33 33 H 1.08995 * 109.47340 * 180.02562 * 14 12 3 34 34 H 1.09004 * 109.46654 * 299.99643 * 14 12 3 35 35 H 1.09000 * 109.46814 * 64.99859 * 15 12 3 36 36 H 1.08996 * 109.46890 * 184.99855 * 15 12 3 37 37 H 0.96999 * 119.99906 * 359.97438 * 16 15 12 38 38 H 1.07998 * 119.71980 * 0.02562 * 20 19 17 39 39 H 1.08007 * 119.45951 * 179.74604 * 22 21 20 40 40 H 1.08002 * 120.34834 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47095 * 262.70688 * 25 24 23 42 42 H 1.09004 * 109.46894 * 22.70853 * 25 24 23 43 43 H 1.09002 * 109.47273 * 142.70744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1889 2.0472 -1.1843 5 1 2.4735 3.0891 -1.1819 6 6 1.9960 1.3831 -2.3880 7 7 1.1421 0.3841 -2.4590 8 14 2.9485 1.9074 -3.9070 9 1 4.2749 1.2399 -3.9145 10 1 2.1919 1.5190 -5.1243 11 1 3.1359 3.3805 -3.8897 12 6 2.3242 2.0500 1.2670 13 1 2.6713 3.0640 1.0681 14 6 3.4163 1.2719 2.0038 15 6 1.0638 2.1036 2.1327 16 7 -0.0183 2.7436 1.3807 17 6 -1.2309 2.9015 1.9472 18 8 -1.4269 2.5125 3.0820 19 6 -2.3228 3.5480 1.1884 20 6 -2.0786 4.1133 -0.0639 21 7 -3.0520 4.6848 -0.7418 22 6 -4.2818 4.7565 -0.2690 23 6 -4.6039 4.2250 0.9665 24 6 -3.6179 3.6081 1.7165 25 6 -3.9302 3.0166 3.0669 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.0071 -0.0797 -3.3001 32 1 4.3142 1.2337 1.3871 33 1 3.6436 1.7692 2.9467 34 1 3.0688 0.2581 2.2027 35 1 0.7671 1.0908 2.4054 36 1 1.2677 2.6782 3.0362 37 1 0.1381 3.0544 0.4752 38 1 -1.0837 4.0779 -0.4825 39 1 -5.0496 5.2379 -0.8567 40 1 -5.6146 4.2900 1.3417 41 1 -3.6593 3.7283 3.8467 42 1 -4.9960 2.7969 3.1296 43 1 -3.3612 2.0966 3.2010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152533711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:39 Heat of formation + Delta-G solvation = 14.871259 kcal Electronic energy + Delta-G solvation = -24363.087089 eV Core-core repulsion = 21022.868746 eV Total energy + Delta-G solvation = -3340.218343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71853 -40.09065 -38.61765 -35.71988 -34.67768 -33.95701 -32.39427 -31.89701 -30.21939 -28.98545 -27.13656 -25.66649 -25.09765 -23.60710 -23.02209 -21.57206 -20.73673 -18.83624 -18.63547 -17.74834 -17.22534 -17.13772 -16.56121 -16.22339 -15.86478 -15.73790 -15.03118 -14.87599 -14.55409 -14.29252 -14.05313 -13.82196 -13.67196 -13.62535 -13.50311 -13.44730 -13.11907 -12.92632 -12.74943 -12.56778 -12.45584 -12.33054 -12.09163 -11.59598 -11.39078 -11.15165 -11.02010 -10.59129 -10.35322 -10.22587 -10.18473 -9.84819 -8.86580 -7.78633 -4.99709 -0.32896 0.19490 1.50955 1.57586 1.60413 1.87662 2.28620 2.57915 2.84202 3.30534 3.36194 3.65492 3.69413 3.74607 3.87974 4.03562 4.09703 4.41270 4.46301 4.58757 4.63089 4.69328 4.71020 4.78296 4.80490 4.85631 4.86413 5.00456 5.14396 5.16063 5.26230 5.31128 5.36052 5.38199 5.46616 5.62590 5.66316 5.71568 5.92659 6.16536 6.40032 6.60116 6.88552 7.21687 7.27296 7.99648 8.40867 9.23061 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.005767 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.104866 B = 4853.709479 C = 6001.331706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.169 3.831 3 N -0.600 5.600 4 C -0.254 4.254 5 H 0.081 0.919 6 C -0.037 4.037 7 N -0.904 5.904 8 Si 0.934 3.066 9 H -0.297 1.297 10 H -0.308 1.308 11 H -0.275 1.275 12 C 0.158 3.842 13 H 0.074 0.926 14 C -0.149 4.149 15 C 0.113 3.887 16 N -0.696 5.696 17 C 0.556 3.444 18 O -0.569 6.569 19 C -0.207 4.207 20 C 0.135 3.865 21 N -0.517 5.517 22 C 0.118 3.882 23 C -0.175 4.175 24 C 0.002 3.998 25 C -0.113 4.113 26 H 0.026 0.974 27 H 0.054 0.946 28 H 0.014 0.986 29 H 0.060 0.940 30 H 0.021 0.979 31 H 0.243 0.757 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.152 0.848 39 H 0.195 0.805 40 H 0.180 0.820 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 6.819 9.101 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 N -0.322 5.322 4 C -0.383 4.383 5 H 0.098 0.902 6 C -0.233 4.233 7 N -0.550 5.550 8 Si 0.765 3.235 9 H -0.225 1.225 10 H -0.235 1.235 11 H -0.200 1.200 12 C 0.050 3.950 13 H 0.092 0.908 14 C -0.208 4.208 15 C -0.012 4.012 16 N -0.346 5.346 17 C 0.343 3.657 18 O -0.451 6.451 19 C -0.212 4.212 20 C -0.023 4.023 21 N -0.226 5.226 22 C -0.038 4.038 23 C -0.194 4.194 24 C -0.006 4.006 25 C -0.169 4.169 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.169 0.831 39 H 0.212 0.788 40 H 0.197 0.803 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.352 6.815 8.934 14.000 hybrid contribution 0.550 -0.381 -0.916 1.134 sum -7.802 6.434 8.018 12.905 Atomic orbital electron populations 1.22172 0.99323 0.97606 0.99800 1.20770 0.92167 0.85090 0.97552 1.44322 1.75899 1.10965 1.01020 1.19456 1.39527 0.95206 0.84078 0.90156 1.25174 0.99871 0.99007 0.99199 1.70387 1.33014 1.26833 1.24785 0.85768 0.79274 0.77809 0.80630 1.22493 1.23531 1.20025 1.20770 0.92049 0.96732 0.85424 0.90781 1.22064 0.98328 1.00269 1.00139 1.21954 0.87761 0.96837 0.94681 1.45880 1.10473 1.59320 1.18912 1.18248 0.82704 0.78852 0.85875 1.90659 1.82343 1.52738 1.19352 1.20930 0.95878 1.06411 0.98026 1.22992 0.98871 0.90871 0.89588 1.67730 1.01953 1.17333 1.35602 1.23635 0.93241 0.93343 0.93570 1.22426 1.01534 0.99719 0.95724 1.20796 0.91088 0.91758 0.96966 1.20983 1.02839 1.01707 0.91346 0.95536 0.92700 0.96646 0.92184 0.96115 0.94760 0.92926 0.90539 0.93450 0.93306 0.90966 0.75594 0.83123 0.78792 0.80274 0.90095 0.89004 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 9.24 71.98 0.67 -5.26 16 2 C 0.17 7.74 5.03 86.38 0.43 8.17 16 3 N -0.60 -26.01 1.92 -678.02 -1.30 -27.32 16 4 C -0.25 -12.26 9.41 84.04 0.79 -11.47 16 5 H 0.08 3.76 7.81 -2.91 -0.02 3.74 16 6 C -0.04 -1.89 5.02 84.87 0.43 -1.46 16 7 N -0.90 -48.77 8.40 21.65 0.18 -48.59 16 8 Si 0.93 42.84 29.64 68.60 2.03 44.87 16 9 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 C 0.16 5.51 2.87 44.99 0.13 5.64 16 13 H 0.07 2.52 7.78 -2.39 -0.02 2.50 16 14 C -0.15 -4.47 9.18 71.98 0.66 -3.81 16 15 C 0.11 3.84 4.31 86.38 0.37 4.21 16 16 N -0.70 -24.66 3.94 -465.97 -1.84 -26.50 16 17 C 0.56 19.82 7.47 86.79 0.65 20.47 16 18 O -0.57 -21.88 13.53 -3.88 -0.05 -21.93 16 19 C -0.21 -6.64 5.89 -19.99 -0.12 -6.76 16 20 C 0.13 4.37 10.70 85.04 0.91 5.28 16 21 N -0.52 -15.56 10.35 -194.77 -2.02 -17.58 16 22 C 0.12 2.59 11.17 84.69 0.95 3.53 16 23 C -0.17 -3.49 9.78 22.32 0.22 -3.27 16 24 C 0.00 0.06 5.95 -19.40 -0.12 -0.05 16 25 C -0.11 -2.67 8.81 71.24 0.63 -2.04 16 26 H 0.03 1.14 4.74 -2.39 -0.01 1.13 16 27 H 0.05 2.84 6.45 -2.38 -0.02 2.83 16 28 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 3.16 5.71 -2.39 -0.01 3.14 16 30 H 0.02 0.87 6.43 -2.39 -0.02 0.86 16 31 H 0.24 13.16 8.31 -92.71 -0.77 12.39 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.47 6.66 -2.39 -0.02 1.45 16 35 H 0.05 1.82 6.84 -2.39 -0.02 1.80 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.41 15.14 6.00 -92.71 -0.56 14.58 16 38 H 0.15 5.03 6.47 -2.91 -0.02 5.02 16 39 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.54 8.06 -2.38 -0.02 1.52 16 43 H 0.07 2.12 6.03 -2.39 -0.01 2.11 16 Total: -1.00 -60.64 338.02 4.07 -56.57 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.47 Total: 27.31 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.60 Total: 13.17 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -4.97 Total: -119.98 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -60.64 4.07 -56.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152533711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.437 kcal (2) G-P(sol) polarization free energy of solvation -60.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds