Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47232 * 2 1 4 4 C 1.36942 * 120.00040 * 89.07162 * 3 2 1 5 5 H 1.07991 * 120.00017 * 223.81603 * 4 3 2 6 6 C 1.38810 * 119.99650 * 44.09462 * 4 3 2 7 7 N 1.31621 * 119.99865 * 201.53257 * 6 4 3 8 8 Si 1.86806 * 119.99986 * 21.53793 * 6 4 3 9 9 H 1.48497 * 109.47425 * 96.59472 * 8 6 4 10 10 H 1.48502 * 109.46784 * 216.59421 * 8 6 4 11 11 H 1.48501 * 109.47058 * 336.59215 * 8 6 4 12 12 C 1.46501 * 120.00360 * 269.07530 * 3 2 1 13 13 H 1.09002 * 109.47698 * 181.78323 * 12 3 2 14 14 C 1.52999 * 109.47283 * 61.77715 * 12 3 2 15 15 C 1.53007 * 109.46976 * 301.78240 * 12 3 2 16 16 N 1.46507 * 109.46722 * 295.62380 * 15 12 3 17 17 C 1.34773 * 119.99602 * 186.13223 * 16 15 12 18 18 O 1.21552 * 120.00028 * 2.35973 * 17 16 15 19 19 C 1.47838 * 119.99784 * 182.35803 * 17 16 15 20 20 C 1.39556 * 120.56004 * 1.22183 * 19 17 16 21 21 N 1.31674 * 120.56593 * 179.75068 * 20 19 17 22 22 C 1.31963 * 121.87635 * 0.54235 * 21 20 19 23 23 C 1.38302 * 121.07908 * 359.72442 * 22 21 20 24 24 C 1.50708 * 120.34493 * 180.02562 * 23 22 21 25 25 C 1.38397 * 119.30879 * 359.97438 * 23 22 21 26 26 H 1.09000 * 109.47212 * 186.12681 * 1 2 3 27 27 H 1.08990 * 109.47054 * 306.13141 * 1 2 3 28 28 H 1.09006 * 109.46629 * 66.13025 * 1 2 3 29 29 H 1.09005 * 109.47060 * 239.99871 * 2 1 3 30 30 H 1.08997 * 109.47082 * 120.00376 * 2 1 3 31 31 H 0.96998 * 119.99839 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46613 * 60.00011 * 14 12 3 33 33 H 1.08996 * 109.47522 * 180.02562 * 14 12 3 34 34 H 1.09002 * 109.47250 * 300.00882 * 14 12 3 35 35 H 1.09001 * 109.47069 * 55.62301 * 15 12 3 36 36 H 1.09000 * 109.47195 * 175.62252 * 15 12 3 37 37 H 0.96991 * 119.99929 * 6.13287 * 16 15 12 38 38 H 1.07994 * 119.72235 * 0.02562 * 20 19 17 39 39 H 1.07997 * 119.45702 * 179.74789 * 22 21 20 40 40 H 1.08997 * 109.47487 * 269.97507 * 24 23 22 41 41 H 1.09001 * 109.46638 * 29.97969 * 24 23 22 42 42 H 1.08998 * 109.46753 * 149.97460 * 24 23 22 43 43 H 1.08003 * 120.85745 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2285 2.0331 1.1858 5 1 1.9010 3.0552 1.3055 6 6 2.8677 1.3821 2.2319 7 7 2.7073 1.8066 3.4674 8 14 3.9558 -0.0965 1.8862 9 1 5.3729 0.3398 1.8051 10 1 3.8052 -1.0886 2.9810 11 1 3.5541 -0.7163 0.5979 12 6 2.2819 2.0650 -1.2685 13 1 2.6661 3.0654 -1.0691 14 6 0.9838 2.1679 -2.0717 15 6 3.3160 1.2720 -2.0702 16 7 4.5908 1.2623 -1.3481 17 6 5.6863 0.7269 -1.9222 18 8 5.6271 0.2909 -3.0553 19 6 6.9600 0.6699 -1.1738 20 6 7.0347 1.1440 0.1366 21 7 8.1679 1.0888 0.8050 22 6 9.2700 0.5995 0.2690 23 6 9.2797 0.1149 -1.0263 24 6 10.5477 -0.4409 -1.6218 25 6 8.1127 0.1446 -1.7695 26 1 -0.3634 -1.0218 0.1097 27 1 -0.3633 0.6059 0.8299 28 1 -0.3633 0.4159 -0.9398 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1542 1.3519 4.1984 32 1 0.2470 2.7329 -1.5006 33 1 1.1799 2.6763 -3.0157 34 1 0.5995 1.1676 -2.2711 35 1 2.9658 0.2483 -2.2029 36 1 3.4546 1.7379 -3.0458 37 1 4.6462 1.6411 -0.4570 38 1 6.1546 1.5555 0.6082 39 1 10.1791 0.5768 0.8515 40 1 11.0996 0.3601 -2.1137 41 1 11.1615 -0.8727 -0.8313 42 1 10.2991 -1.2119 -2.3510 43 1 8.0918 -0.2277 -2.7832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152561660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = 21.212729 kcal Electronic energy + Delta-G solvation = -24096.974849 eV Core-core repulsion = 20757.031493 eV Total energy + Delta-G solvation = -3339.943357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57453 -38.94638 -37.21075 -34.27703 -33.62309 -32.45839 -31.89872 -30.89134 -28.88761 -27.48095 -26.29027 -24.07816 -23.36370 -22.74940 -22.32831 -20.13847 -19.46660 -17.59607 -16.95184 -16.83687 -16.44282 -15.66736 -15.32280 -15.05831 -14.48910 -14.35900 -14.02960 -13.56101 -13.28350 -13.02733 -12.93288 -12.76801 -12.75322 -12.63397 -12.31937 -12.09495 -12.06100 -11.91873 -11.58917 -11.48734 -10.87549 -10.68573 -10.26195 -10.05471 -10.03132 -9.83129 -9.81923 -9.34642 -9.30087 -9.03600 -8.67553 -8.51638 -6.81061 -6.10726 -3.59381 0.66429 1.16009 3.00324 3.21316 3.37600 3.43073 3.48823 3.88012 4.34251 4.43037 4.61011 4.76067 4.86452 4.86866 4.90240 5.12207 5.18664 5.35697 5.37624 5.48742 5.55860 5.74149 5.76397 5.91370 5.95813 6.02125 6.03671 6.06482 6.16041 6.23610 6.34483 6.38068 6.53726 6.57586 6.66848 6.69059 6.86393 6.90622 7.13790 7.80987 7.88432 8.00050 8.35941 8.42700 8.92605 9.61058 10.07097 11.04141 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.005820 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.482720 B = 4809.689194 C = 5853.215051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 N -0.598 5.598 4 C -0.279 4.279 5 H 0.075 0.925 6 C 0.048 3.952 7 N -0.891 5.891 8 Si 0.839 3.161 9 H -0.273 1.273 10 H -0.296 1.296 11 H -0.250 1.250 12 C 0.155 3.845 13 H 0.079 0.921 14 C -0.158 4.158 15 C 0.102 3.898 16 N -0.703 5.703 17 C 0.558 3.442 18 O -0.549 6.549 19 C -0.184 4.184 20 C 0.134 3.866 21 N -0.480 5.480 22 C 0.117 3.883 23 C -0.155 4.155 24 C -0.106 4.106 25 C -0.020 4.020 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.629 -2.764 -9.914 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.321 5.321 4 C -0.408 4.408 5 H 0.093 0.907 6 C -0.155 4.155 7 N -0.530 5.530 8 Si 0.667 3.333 9 H -0.200 1.200 10 H -0.223 1.223 11 H -0.175 1.175 12 C 0.047 3.953 13 H 0.097 0.903 14 C -0.217 4.217 15 C -0.024 4.024 16 N -0.354 5.354 17 C 0.344 3.656 18 O -0.429 6.429 19 C -0.189 4.189 20 C -0.024 4.024 21 N -0.188 5.188 22 C -0.040 4.040 23 C -0.157 4.157 24 C -0.163 4.163 25 C -0.047 4.047 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.246 0.754 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.593 -2.763 -9.629 13.871 hybrid contribution 0.489 -1.099 -0.220 1.223 sum 10.082 -3.862 -9.849 14.614 Atomic orbital electron populations 1.22432 0.99298 0.99477 1.01684 1.21209 0.91963 0.86669 0.98758 1.44159 1.75247 1.11374 1.01335 1.18710 1.34046 0.99554 0.88443 0.90749 1.25631 0.97216 0.97358 0.95257 1.69871 1.42633 1.41983 0.98535 0.87762 0.82339 0.84218 0.78973 1.20002 1.22341 1.17459 1.20841 0.91836 0.96027 0.86598 0.90291 1.22259 0.98913 1.01510 0.99018 1.22093 0.83258 1.01716 0.95286 1.45941 1.09074 1.59521 1.20859 1.18004 0.83380 0.78344 0.85911 1.90718 1.85394 1.48583 1.18228 1.21120 0.95715 1.05400 0.96704 1.23365 0.96285 0.92904 0.89822 1.67744 0.99037 1.14965 1.37034 1.22933 0.96545 0.92373 0.92187 1.20906 0.96635 1.02091 0.96024 1.20697 0.93671 1.00872 1.01101 1.21582 0.90261 0.92852 0.99970 0.94704 0.92148 0.93436 0.94522 0.93253 0.92568 0.92065 0.93538 0.92739 0.91942 0.91665 0.75392 0.81803 0.82430 0.90817 0.91068 0.91177 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.90 37.16 0.37 -2.75 16 2 C 0.14 2.86 3.96 -4.04 -0.02 2.84 16 3 N -0.60 -12.66 1.67 -165.66 -0.28 -12.94 16 4 C -0.28 -7.05 9.76 -15.06 -0.15 -7.20 16 5 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 6 C 0.05 1.27 5.28 -17.43 -0.09 1.17 16 7 N -0.89 -25.75 13.97 55.49 0.78 -24.97 16 8 Si 0.84 19.86 24.25 -169.99 -4.12 15.74 16 9 H -0.27 -6.19 4.70 56.52 0.27 -5.92 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.25 -5.71 5.21 56.52 0.29 -5.41 16 12 C 0.15 2.74 2.77 -67.93 -0.19 2.56 16 13 H 0.08 1.43 7.89 -51.93 -0.41 1.02 16 14 C -0.16 -2.40 8.38 37.16 0.31 -2.09 16 15 C 0.10 1.76 5.04 -4.03 -0.02 1.73 16 16 N -0.70 -12.85 5.25 -61.24 -0.32 -13.17 16 17 C 0.56 10.25 7.78 -12.33 -0.10 10.16 16 18 O -0.55 -11.02 16.40 5.32 0.09 -10.94 16 19 C -0.18 -3.09 5.89 -104.82 -0.62 -3.71 16 20 C 0.13 2.36 9.75 -17.13 -0.17 2.19 16 21 N -0.48 -8.05 10.35 -12.91 -0.13 -8.19 16 22 C 0.12 1.52 10.85 -17.47 -0.19 1.33 16 23 C -0.15 -1.83 5.89 -104.54 -0.62 -2.45 16 24 C -0.11 -0.83 10.03 36.01 0.36 -0.47 16 25 C -0.02 -0.28 9.39 -38.87 -0.37 -0.65 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.79 5.68 -51.93 -0.30 0.49 16 29 H 0.04 0.71 6.25 -51.93 -0.32 0.39 16 30 H 0.05 1.12 4.15 -51.93 -0.22 0.91 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.81 6.09 -51.93 -0.32 0.50 16 35 H 0.06 1.13 6.43 -51.93 -0.33 0.80 16 36 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.41 7.77 5.02 -40.82 -0.21 7.56 16 38 H 0.17 3.07 4.64 -52.49 -0.24 2.83 16 39 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 42 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 43 H 0.15 1.88 7.74 -52.48 -0.41 1.48 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -30.22 336.89 -6.74 -36.96 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.35 Total: 9.76 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.47 Total: 2.67 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.04 Total: -59.27 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.12 Total: 15.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.22 -6.74 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152561660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds