Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47232 * 2 1 4 4 C 1.36942 * 120.00040 * 89.07162 * 3 2 1 5 5 H 1.07991 * 120.00017 * 223.81603 * 4 3 2 6 6 C 1.38810 * 119.99650 * 44.09462 * 4 3 2 7 7 N 1.31621 * 119.99865 * 201.53257 * 6 4 3 8 8 Si 1.86806 * 119.99986 * 21.53793 * 6 4 3 9 9 H 1.48497 * 109.47425 * 96.59472 * 8 6 4 10 10 H 1.48502 * 109.46784 * 216.59421 * 8 6 4 11 11 H 1.48501 * 109.47058 * 336.59215 * 8 6 4 12 12 C 1.46501 * 120.00360 * 269.07530 * 3 2 1 13 13 H 1.09002 * 109.47698 * 181.78323 * 12 3 2 14 14 C 1.52999 * 109.47283 * 61.77715 * 12 3 2 15 15 C 1.53007 * 109.46976 * 301.78240 * 12 3 2 16 16 N 1.46507 * 109.46722 * 295.62380 * 15 12 3 17 17 C 1.34773 * 119.99602 * 186.13223 * 16 15 12 18 18 O 1.21552 * 120.00028 * 2.35973 * 17 16 15 19 19 C 1.47838 * 119.99784 * 182.35803 * 17 16 15 20 20 C 1.39556 * 120.56004 * 1.22183 * 19 17 16 21 21 N 1.31674 * 120.56593 * 179.75068 * 20 19 17 22 22 C 1.31963 * 121.87635 * 0.54235 * 21 20 19 23 23 C 1.38302 * 121.07908 * 359.72442 * 22 21 20 24 24 C 1.50708 * 120.34493 * 180.02562 * 23 22 21 25 25 C 1.38397 * 119.30879 * 359.97438 * 23 22 21 26 26 H 1.09000 * 109.47212 * 186.12681 * 1 2 3 27 27 H 1.08990 * 109.47054 * 306.13141 * 1 2 3 28 28 H 1.09006 * 109.46629 * 66.13025 * 1 2 3 29 29 H 1.09005 * 109.47060 * 239.99871 * 2 1 3 30 30 H 1.08997 * 109.47082 * 120.00376 * 2 1 3 31 31 H 0.96998 * 119.99839 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46613 * 60.00011 * 14 12 3 33 33 H 1.08996 * 109.47522 * 180.02562 * 14 12 3 34 34 H 1.09002 * 109.47250 * 300.00882 * 14 12 3 35 35 H 1.09001 * 109.47069 * 55.62301 * 15 12 3 36 36 H 1.09000 * 109.47195 * 175.62252 * 15 12 3 37 37 H 0.96991 * 119.99929 * 6.13287 * 16 15 12 38 38 H 1.07994 * 119.72235 * 0.02562 * 20 19 17 39 39 H 1.07997 * 119.45702 * 179.74789 * 22 21 20 40 40 H 1.08997 * 109.47487 * 269.97507 * 24 23 22 41 41 H 1.09001 * 109.46638 * 29.97969 * 24 23 22 42 42 H 1.08998 * 109.46753 * 149.97460 * 24 23 22 43 43 H 1.08003 * 120.85745 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2285 2.0331 1.1858 5 1 1.9010 3.0552 1.3055 6 6 2.8677 1.3821 2.2319 7 7 2.7073 1.8066 3.4674 8 14 3.9558 -0.0965 1.8862 9 1 5.3729 0.3398 1.8051 10 1 3.8052 -1.0886 2.9810 11 1 3.5541 -0.7163 0.5979 12 6 2.2819 2.0650 -1.2685 13 1 2.6661 3.0654 -1.0691 14 6 0.9838 2.1679 -2.0717 15 6 3.3160 1.2720 -2.0702 16 7 4.5908 1.2623 -1.3481 17 6 5.6863 0.7269 -1.9222 18 8 5.6271 0.2909 -3.0553 19 6 6.9600 0.6699 -1.1738 20 6 7.0347 1.1440 0.1366 21 7 8.1679 1.0888 0.8050 22 6 9.2700 0.5995 0.2690 23 6 9.2797 0.1149 -1.0263 24 6 10.5477 -0.4409 -1.6218 25 6 8.1127 0.1446 -1.7695 26 1 -0.3634 -1.0218 0.1097 27 1 -0.3633 0.6059 0.8299 28 1 -0.3633 0.4159 -0.9398 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1542 1.3519 4.1984 32 1 0.2470 2.7329 -1.5006 33 1 1.1799 2.6763 -3.0157 34 1 0.5995 1.1676 -2.2711 35 1 2.9658 0.2483 -2.2029 36 1 3.4546 1.7379 -3.0458 37 1 4.6462 1.6411 -0.4570 38 1 6.1546 1.5555 0.6082 39 1 10.1791 0.5768 0.8515 40 1 11.0996 0.3601 -2.1137 41 1 11.1615 -0.8727 -0.8313 42 1 10.2991 -1.2119 -2.3510 43 1 8.0918 -0.2277 -2.7832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152561660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = 1.068674 kcal Electronic energy + Delta-G solvation = -24097.848361 eV Core-core repulsion = 20757.031493 eV Total energy + Delta-G solvation = -3340.816868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78455 -40.29276 -38.80396 -35.74405 -34.71424 -34.13469 -33.35455 -32.34184 -30.61073 -28.36238 -27.57692 -25.73790 -24.78409 -23.92717 -23.86621 -21.50530 -20.97391 -18.88275 -18.79757 -18.06925 -17.61730 -17.45673 -16.78159 -16.53019 -15.94557 -15.64542 -15.24370 -14.99920 -14.67051 -14.46039 -14.31808 -14.16691 -14.01578 -13.65425 -13.57813 -13.52726 -13.32039 -13.14997 -13.05332 -12.89107 -12.51237 -12.40303 -12.00049 -11.74177 -11.46395 -11.39636 -11.09371 -10.97856 -10.61974 -10.50996 -10.18561 -9.95978 -8.64123 -8.20686 -5.64578 -0.50036 0.06103 1.29688 1.43753 1.48586 1.70215 2.10051 2.42172 2.69564 3.04304 3.19681 3.34311 3.59030 3.70478 3.75489 3.84315 3.98311 4.14337 4.28629 4.39352 4.40458 4.54242 4.69144 4.70749 4.73555 4.80401 4.82960 4.84003 4.89575 5.00995 5.08481 5.12731 5.17593 5.19875 5.29513 5.34673 5.51331 5.54038 5.61387 5.97314 6.27273 6.36744 6.74243 6.99069 7.04753 7.64827 8.11778 8.98245 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.005820 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.482720 B = 4809.689194 C = 5853.215051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 N -0.604 5.604 4 C -0.254 4.254 5 H 0.041 0.959 6 C 0.000 4.000 7 N -0.941 5.941 8 Si 0.899 3.101 9 H -0.263 1.263 10 H -0.320 1.320 11 H -0.236 1.236 12 C 0.154 3.846 13 H 0.071 0.929 14 C -0.149 4.149 15 C 0.107 3.893 16 N -0.709 5.709 17 C 0.558 3.442 18 O -0.569 6.569 19 C -0.200 4.200 20 C 0.114 3.886 21 N -0.509 5.509 22 C 0.116 3.884 23 C -0.135 4.135 24 C -0.104 4.104 25 C -0.026 4.026 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.404 0.596 38 H 0.142 0.858 39 H 0.196 0.804 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.455 -4.075 -12.444 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 N -0.328 5.328 4 C -0.384 4.384 5 H 0.058 0.942 6 C -0.197 4.197 7 N -0.584 5.584 8 Si 0.727 3.273 9 H -0.190 1.190 10 H -0.248 1.248 11 H -0.160 1.160 12 C 0.047 3.953 13 H 0.089 0.911 14 C -0.208 4.208 15 C -0.018 4.018 16 N -0.359 5.359 17 C 0.346 3.654 18 O -0.451 6.451 19 C -0.205 4.205 20 C -0.043 4.043 21 N -0.218 5.218 22 C -0.041 4.041 23 C -0.137 4.137 24 C -0.161 4.161 25 C -0.052 4.052 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.240 0.760 38 H 0.159 0.841 39 H 0.213 0.787 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.411 -4.071 -12.218 17.207 hybrid contribution -0.036 -0.644 0.502 0.818 sum 11.374 -4.715 -11.716 16.997 Atomic orbital electron populations 1.22313 0.97450 1.00538 1.01652 1.21246 0.93501 0.85879 0.98402 1.44200 1.75637 1.11663 1.01293 1.18519 1.31853 0.98172 0.89817 0.94186 1.26093 0.98640 1.00067 0.94934 1.69994 1.44700 1.44190 0.99502 0.86845 0.81381 0.80819 0.78286 1.18952 1.24847 1.15977 1.20954 0.93597 0.95302 0.85427 0.91091 1.22144 0.96790 1.02214 0.99614 1.22066 0.82573 1.01402 0.95727 1.46060 1.09601 1.59525 1.20690 1.18242 0.83827 0.77669 0.85703 1.90692 1.85800 1.49593 1.18966 1.21047 0.95952 1.06978 0.96507 1.23033 0.96336 0.94556 0.90413 1.67708 0.99804 1.16239 1.38000 1.23612 0.96496 0.90928 0.93088 1.21348 0.97436 0.99767 0.95159 1.20831 0.91728 1.01588 1.01975 1.21844 0.90167 0.92562 1.00658 0.92517 0.94904 0.91303 0.92652 0.95721 0.93079 0.93038 0.90612 0.91986 0.92235 0.89842 0.75990 0.84085 0.78742 0.89030 0.88916 0.90249 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 9.90 71.98 0.71 -4.93 16 2 C 0.13 5.37 3.96 86.38 0.34 5.71 16 3 N -0.60 -25.50 1.67 -678.02 -1.13 -26.63 16 4 C -0.25 -13.23 9.76 84.03 0.82 -12.41 16 5 H 0.04 2.35 8.06 -2.92 -0.02 2.33 16 6 C 0.00 0.03 5.28 84.86 0.45 0.47 16 7 N -0.94 -56.92 13.97 21.65 0.30 -56.62 16 8 Si 0.90 42.94 24.25 68.60 1.66 44.61 16 9 H -0.26 -12.04 4.70 99.48 0.47 -11.58 16 10 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 11 H -0.24 -10.56 5.21 99.48 0.52 -10.04 16 12 C 0.15 5.29 2.77 44.99 0.12 5.41 16 13 H 0.07 2.56 7.89 -2.39 -0.02 2.54 16 14 C -0.15 -4.15 8.38 71.98 0.60 -3.55 16 15 C 0.11 3.52 5.04 86.38 0.44 3.95 16 16 N -0.71 -25.55 5.25 -465.96 -2.45 -27.99 16 17 C 0.56 20.11 7.78 86.78 0.68 20.79 16 18 O -0.57 -22.07 16.40 -3.88 -0.06 -22.13 16 19 C -0.20 -6.56 5.89 -20.00 -0.12 -6.68 16 20 C 0.11 4.02 9.75 85.03 0.83 4.85 16 21 N -0.51 -16.66 10.35 -194.76 -2.02 -18.67 16 22 C 0.12 2.69 10.85 84.69 0.92 3.61 16 23 C -0.14 -2.77 5.89 -19.81 -0.12 -2.88 16 24 C -0.10 -1.15 10.03 71.24 0.71 -0.43 16 25 C -0.03 -0.68 9.39 22.73 0.21 -0.47 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.07 2.11 5.68 -2.38 -0.01 2.09 16 29 H 0.06 2.02 6.25 -2.38 -0.01 2.00 16 30 H 0.02 1.11 4.15 -2.39 -0.01 1.10 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.65 6.09 -2.39 -0.01 1.64 16 35 H 0.06 2.01 6.43 -2.39 -0.02 2.00 16 36 H 0.08 2.47 8.10 -2.39 -0.02 2.45 16 37 H 0.40 15.53 5.02 -92.71 -0.47 15.06 16 38 H 0.14 5.48 4.64 -2.91 -0.01 5.47 16 39 H 0.20 2.92 8.06 -2.91 -0.02 2.89 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 42 H 0.08 0.79 8.09 -2.39 -0.02 0.78 16 43 H 0.16 3.68 7.74 -2.91 -0.02 3.65 16 Total: -1.00 -68.28 336.89 3.04 -65.24 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.13 Total: 28.76 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.60 Total: 13.44 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -5.29 Total: -129.92 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.66 Total: 44.61 kcal Total: -68.28 3.04 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152561660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.313 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds