Wall clock time and date at job start Tue Mar 31 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47325 * 2 1 4 4 C 1.36938 * 120.00118 * 90.31298 * 3 2 1 5 5 H 1.07999 * 119.99781 * 230.09879 * 4 3 2 6 6 C 1.38806 * 119.99853 * 50.36711 * 4 3 2 7 7 N 1.31624 * 119.99935 * 201.23677 * 6 4 3 8 8 Si 1.86804 * 119.99859 * 21.24321 * 6 4 3 9 9 H 1.48500 * 109.46958 * 89.11261 * 8 6 4 10 10 H 1.48498 * 109.46700 * 209.11030 * 8 6 4 11 11 H 1.48494 * 109.46915 * 329.11267 * 8 6 4 12 12 C 1.46503 * 120.00058 * 270.31746 * 3 2 1 13 13 H 1.08998 * 109.47250 * 175.54664 * 12 3 2 14 14 C 1.53009 * 109.47118 * 55.54791 * 12 3 2 15 15 C 1.53001 * 109.46851 * 295.55303 * 12 3 2 16 16 N 1.46502 * 109.46702 * 299.22382 * 15 12 3 17 17 C 1.34780 * 119.99973 * 183.82826 * 16 15 12 18 18 O 1.21516 * 119.99700 * 4.86437 * 17 16 15 19 19 C 1.48168 * 120.00142 * 184.86316 * 17 16 15 20 20 N 1.32749 * 119.71937 * 353.24885 * 19 17 16 21 21 C 1.31496 * 121.63984 * 179.71309 * 20 19 17 22 22 C 1.38603 * 120.90054 * 0.55938 * 21 20 19 23 23 C 1.38595 * 119.35200 * 359.72515 * 22 21 20 24 24 C 1.38631 * 118.48406 * 359.97438 * 23 22 21 25 25 C 1.50700 * 120.46725 * 180.02562 * 24 23 22 26 26 H 1.08994 * 109.47107 * 185.91788 * 1 2 3 27 27 H 1.08996 * 109.47330 * 305.92721 * 1 2 3 28 28 H 1.09004 * 109.46513 * 65.91925 * 1 2 3 29 29 H 1.08992 * 109.47384 * 239.99684 * 2 1 3 30 30 H 1.09003 * 109.47107 * 119.99493 * 2 1 3 31 31 H 0.96998 * 119.99723 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46945 * 60.00059 * 14 12 3 33 33 H 1.08995 * 109.47098 * 180.02562 * 14 12 3 34 34 H 1.09007 * 109.46798 * 300.00074 * 14 12 3 35 35 H 1.08998 * 109.47579 * 59.22490 * 15 12 3 36 36 H 1.09001 * 109.46900 * 179.23302 * 15 12 3 37 37 H 0.96999 * 120.00123 * 3.83673 * 16 15 12 38 38 H 1.07995 * 119.55158 * 180.30365 * 21 20 19 39 39 H 1.07999 * 120.32680 * 179.74594 * 22 21 20 40 40 H 1.07991 * 120.75244 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47115 * 260.99945 * 25 24 23 42 42 H 1.09004 * 109.46656 * 20.99454 * 25 24 23 43 43 H 1.08994 * 109.46841 * 140.99362 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2528 2.0246 1.1859 5 1 1.8404 3.0079 1.3574 6 6 3.0250 1.4153 2.1652 7 7 2.9206 1.8000 3.4197 8 14 4.2126 0.0495 1.7028 9 1 5.5308 0.6371 1.3532 10 1 4.3728 -0.8771 2.8521 11 1 3.6781 -0.6970 0.5358 12 6 2.2560 2.0742 -1.2687 13 1 2.5381 3.1082 -1.0707 14 6 0.9795 2.0464 -2.1119 15 6 3.3844 1.3741 -2.0287 16 7 4.6113 1.4169 -1.2292 17 6 5.7614 0.9270 -1.7331 18 8 5.8016 0.5309 -2.8812 19 6 6.9766 0.8713 -0.8872 20 7 6.9651 1.4265 0.3186 21 6 8.0201 1.3945 1.1028 22 6 9.1949 0.7851 0.6910 23 6 9.2521 0.1977 -0.5630 24 6 8.1227 0.2414 -1.3657 25 6 8.1353 -0.3835 -2.7370 26 1 -0.3633 -1.0221 0.1059 27 1 -0.3634 0.6030 0.8321 28 1 -0.3632 0.4193 -0.9383 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.4605 1.3744 4.1040 32 1 0.1755 2.5451 -1.5705 33 1 1.1564 2.5616 -3.0560 34 1 0.6973 1.0123 -2.3099 35 1 3.1079 0.3363 -2.2147 36 1 3.5519 1.8815 -2.9787 37 1 4.5960 1.7977 -0.3373 38 1 7.9718 1.8528 2.0795 39 1 10.0571 0.7677 1.3411 40 1 10.1560 -0.2829 -0.9069 41 1 8.3020 0.3896 -3.4871 42 1 8.9351 -1.1220 -2.7924 43 1 7.1779 -0.8701 -2.9233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152654421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:13 Heat of formation + Delta-G solvation = 31.147959 kcal Electronic energy + Delta-G solvation = -24559.379198 eV Core-core repulsion = 21219.866665 eV Total energy + Delta-G solvation = -3339.512533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57734 -38.70844 -37.11225 -34.28748 -33.21040 -32.23168 -31.85753 -30.80458 -28.85414 -27.54825 -25.89667 -24.14581 -23.46160 -22.21601 -22.01642 -20.32169 -19.45380 -17.62250 -16.87916 -16.64306 -15.58763 -15.50994 -15.27587 -15.16766 -14.62813 -14.32363 -13.73811 -13.44409 -13.28353 -12.99223 -12.73803 -12.65481 -12.55765 -12.30596 -12.15565 -11.98687 -11.90985 -11.78376 -11.49290 -11.39247 -10.75833 -10.68450 -10.21588 -9.94597 -9.84674 -9.75075 -9.49947 -9.39915 -9.04596 -8.96163 -8.39015 -8.23071 -6.60531 -6.01565 -3.58404 0.78399 1.27523 3.01784 3.42789 3.55336 3.59876 3.62719 4.06710 4.41917 4.60887 4.77970 4.87168 4.95224 4.98831 5.06390 5.28314 5.40712 5.53138 5.63630 5.71457 5.81848 5.84054 5.99778 6.03551 6.04682 6.09370 6.14203 6.21290 6.29408 6.36296 6.39880 6.43585 6.62867 6.69583 6.73809 6.81055 6.97559 7.02588 7.19426 7.82406 8.10487 8.15621 8.50184 8.62697 9.03774 9.69716 10.18506 11.11726 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.006821 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.725527 B = 4103.958775 C = 5193.820590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 N -0.596 5.596 4 C -0.285 4.285 5 H 0.070 0.930 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.815 3.185 9 H -0.209 1.209 10 H -0.310 1.310 11 H -0.263 1.263 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.156 4.156 15 C 0.100 3.900 16 N -0.688 5.688 17 C 0.562 3.438 18 O -0.547 6.547 19 C 0.065 3.935 20 N -0.420 5.420 21 C 0.083 3.917 22 C -0.148 4.148 23 C -0.097 4.097 24 C -0.077 4.077 25 C -0.110 4.110 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.049 0.951 31 H 0.262 0.738 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.422 0.578 38 H 0.161 0.839 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -2.583 -8.534 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.319 5.319 4 C -0.414 4.414 5 H 0.087 0.913 6 C -0.145 4.145 7 N -0.532 5.532 8 Si 0.643 3.357 9 H -0.134 1.134 10 H -0.239 1.239 11 H -0.188 1.188 12 C 0.046 3.954 13 H 0.096 0.904 14 C -0.215 4.215 15 C -0.026 4.026 16 N -0.340 5.340 17 C 0.347 3.653 18 O -0.427 6.427 19 C -0.073 4.073 20 N -0.131 5.131 21 C -0.076 4.076 22 C -0.168 4.168 23 C -0.123 4.123 24 C -0.080 4.080 25 C -0.167 4.167 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.262 0.738 38 H 0.178 0.822 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.021 -2.447 -8.860 12.879 hybrid contribution 1.365 -1.175 0.428 1.851 sum 10.386 -3.622 -8.432 13.860 Atomic orbital electron populations 1.22451 0.99444 0.99362 1.01635 1.21113 0.91768 0.86782 0.98645 1.44097 1.75386 1.11198 1.01179 1.18621 1.28412 1.03624 0.90730 0.91299 1.25726 0.96484 0.97213 0.95095 1.69904 1.39824 1.43477 0.99976 0.88161 0.86675 0.83077 0.77807 1.13432 1.23861 1.18842 1.20876 0.91070 0.96624 0.86869 0.90428 1.22240 0.98982 1.01421 0.98868 1.22096 0.84890 1.01400 0.94178 1.46012 1.07762 1.59149 1.21077 1.17883 0.82871 0.78537 0.86026 1.90675 1.85060 1.49576 1.17348 1.21138 0.94581 0.99404 0.92145 1.67958 1.28064 1.14736 1.02390 1.22798 0.88015 0.97164 0.99651 1.22333 0.99694 0.97944 0.96789 1.21455 0.97923 0.98972 0.93920 1.20911 0.92754 0.96397 0.97944 1.20965 1.03859 1.00228 0.91643 0.94793 0.92295 0.93403 0.94960 0.93229 0.92797 0.92120 0.93524 0.92775 0.92300 0.91993 0.73785 0.82228 0.84531 0.84519 0.90491 0.92615 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 9.87 37.16 0.37 -2.84 16 2 C 0.14 3.05 3.89 -4.04 -0.02 3.04 16 3 N -0.60 -13.27 1.42 -165.66 -0.24 -13.50 16 4 C -0.29 -7.55 9.32 -15.06 -0.14 -7.69 16 5 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 6 C 0.06 1.59 5.24 -17.43 -0.09 1.50 16 7 N -0.89 -26.41 13.97 55.49 0.78 -25.63 16 8 Si 0.81 19.89 23.33 -169.99 -3.97 15.92 16 9 H -0.21 -4.66 3.29 56.52 0.19 -4.48 16 10 H -0.31 -8.18 7.11 56.52 0.40 -7.78 16 11 H -0.26 -6.46 5.36 56.52 0.30 -6.15 16 12 C 0.15 2.89 2.80 -67.92 -0.19 2.70 16 13 H 0.08 1.51 7.90 -51.93 -0.41 1.10 16 14 C -0.16 -2.47 8.01 37.16 0.30 -2.17 16 15 C 0.10 1.85 5.08 -4.04 -0.02 1.82 16 16 N -0.69 -13.79 4.32 -61.14 -0.26 -14.06 16 17 C 0.56 11.00 7.74 -12.18 -0.09 10.90 16 18 O -0.55 -10.92 13.37 5.35 0.07 -10.85 16 19 C 0.07 1.18 6.72 -83.01 -0.56 0.62 16 20 N -0.42 -7.65 6.43 -9.80 -0.06 -7.71 16 21 C 0.08 1.22 11.04 -17.56 -0.19 1.02 16 22 C -0.15 -1.72 10.11 -39.32 -0.40 -2.12 16 23 C -0.10 -1.16 9.82 -39.30 -0.39 -1.54 16 24 C -0.08 -1.15 5.93 -104.10 -0.62 -1.77 16 25 C -0.11 -1.47 8.63 36.01 0.31 -1.15 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.81 5.58 -51.93 -0.29 0.52 16 29 H 0.03 0.66 6.65 -51.93 -0.35 0.31 16 30 H 0.05 1.18 4.95 -51.93 -0.26 0.93 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.84 6.23 -51.92 -0.32 0.52 16 35 H 0.06 1.12 6.81 -51.93 -0.35 0.77 16 36 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 37 H 0.42 9.12 4.83 -40.82 -0.20 8.93 16 38 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.58 8.04 -51.93 -0.42 0.16 16 43 H 0.10 1.48 6.05 -51.93 -0.31 1.17 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -30.86 329.18 -7.03 -37.89 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.58 Total: 10.66 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.73 Total: 2.32 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.21 Total: -60.90 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -3.97 Total: 15.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.86 -7.03 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152654421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.040 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds