Wall clock time and date at job start Tue Mar 31 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47325 * 2 1 4 4 C 1.36938 * 120.00118 * 90.31298 * 3 2 1 5 5 H 1.07999 * 119.99781 * 230.09879 * 4 3 2 6 6 C 1.38806 * 119.99853 * 50.36711 * 4 3 2 7 7 N 1.31624 * 119.99935 * 201.23677 * 6 4 3 8 8 Si 1.86804 * 119.99859 * 21.24321 * 6 4 3 9 9 H 1.48500 * 109.46958 * 89.11261 * 8 6 4 10 10 H 1.48498 * 109.46700 * 209.11030 * 8 6 4 11 11 H 1.48494 * 109.46915 * 329.11267 * 8 6 4 12 12 C 1.46503 * 120.00058 * 270.31746 * 3 2 1 13 13 H 1.08998 * 109.47250 * 175.54664 * 12 3 2 14 14 C 1.53009 * 109.47118 * 55.54791 * 12 3 2 15 15 C 1.53001 * 109.46851 * 295.55303 * 12 3 2 16 16 N 1.46502 * 109.46702 * 299.22382 * 15 12 3 17 17 C 1.34780 * 119.99973 * 183.82826 * 16 15 12 18 18 O 1.21516 * 119.99700 * 4.86437 * 17 16 15 19 19 C 1.48168 * 120.00142 * 184.86316 * 17 16 15 20 20 N 1.32749 * 119.71937 * 353.24885 * 19 17 16 21 21 C 1.31496 * 121.63984 * 179.71309 * 20 19 17 22 22 C 1.38603 * 120.90054 * 0.55938 * 21 20 19 23 23 C 1.38595 * 119.35200 * 359.72515 * 22 21 20 24 24 C 1.38631 * 118.48406 * 359.97438 * 23 22 21 25 25 C 1.50700 * 120.46725 * 180.02562 * 24 23 22 26 26 H 1.08994 * 109.47107 * 185.91788 * 1 2 3 27 27 H 1.08996 * 109.47330 * 305.92721 * 1 2 3 28 28 H 1.09004 * 109.46513 * 65.91925 * 1 2 3 29 29 H 1.08992 * 109.47384 * 239.99684 * 2 1 3 30 30 H 1.09003 * 109.47107 * 119.99493 * 2 1 3 31 31 H 0.96998 * 119.99723 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46945 * 60.00059 * 14 12 3 33 33 H 1.08995 * 109.47098 * 180.02562 * 14 12 3 34 34 H 1.09007 * 109.46798 * 300.00074 * 14 12 3 35 35 H 1.08998 * 109.47579 * 59.22490 * 15 12 3 36 36 H 1.09001 * 109.46900 * 179.23302 * 15 12 3 37 37 H 0.96999 * 120.00123 * 3.83673 * 16 15 12 38 38 H 1.07995 * 119.55158 * 180.30365 * 21 20 19 39 39 H 1.07999 * 120.32680 * 179.74594 * 22 21 20 40 40 H 1.07991 * 120.75244 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47115 * 260.99945 * 25 24 23 42 42 H 1.09004 * 109.46656 * 20.99454 * 25 24 23 43 43 H 1.08994 * 109.46841 * 140.99362 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2528 2.0246 1.1859 5 1 1.8404 3.0079 1.3574 6 6 3.0250 1.4153 2.1652 7 7 2.9206 1.8000 3.4197 8 14 4.2126 0.0495 1.7028 9 1 5.5308 0.6371 1.3532 10 1 4.3728 -0.8771 2.8521 11 1 3.6781 -0.6970 0.5358 12 6 2.2560 2.0742 -1.2687 13 1 2.5381 3.1082 -1.0707 14 6 0.9795 2.0464 -2.1119 15 6 3.3844 1.3741 -2.0287 16 7 4.6113 1.4169 -1.2292 17 6 5.7614 0.9270 -1.7331 18 8 5.8016 0.5309 -2.8812 19 6 6.9766 0.8713 -0.8872 20 7 6.9651 1.4265 0.3186 21 6 8.0201 1.3945 1.1028 22 6 9.1949 0.7851 0.6910 23 6 9.2521 0.1977 -0.5630 24 6 8.1227 0.2414 -1.3657 25 6 8.1353 -0.3835 -2.7370 26 1 -0.3633 -1.0221 0.1059 27 1 -0.3634 0.6030 0.8321 28 1 -0.3632 0.4193 -0.9383 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.4605 1.3744 4.1040 32 1 0.1755 2.5451 -1.5705 33 1 1.1564 2.5616 -3.0560 34 1 0.6973 1.0123 -2.3099 35 1 3.1079 0.3363 -2.2147 36 1 3.5519 1.8815 -2.9787 37 1 4.5960 1.7977 -0.3373 38 1 7.9718 1.8528 2.0795 39 1 10.0571 0.7677 1.3411 40 1 10.1560 -0.2829 -0.9069 41 1 8.3020 0.3896 -3.4871 42 1 8.9351 -1.1220 -2.7924 43 1 7.1779 -0.8701 -2.9233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152654421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:12 Heat of formation + Delta-G solvation = 11.191166 kcal Electronic energy + Delta-G solvation = -24560.244589 eV Core-core repulsion = 21219.866665 eV Total energy + Delta-G solvation = -3340.377924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78387 -40.08533 -38.74903 -35.75947 -34.51891 -34.01481 -33.12782 -32.31656 -30.64793 -28.67728 -27.19814 -25.70288 -25.03366 -23.83930 -23.13588 -21.69065 -21.08419 -18.96776 -18.81821 -17.83891 -17.32097 -16.85222 -16.73466 -16.47211 -15.99095 -15.83086 -15.25560 -14.81235 -14.77707 -14.43719 -14.21579 -14.08976 -13.89427 -13.78314 -13.60330 -13.34498 -13.21151 -13.09823 -13.01700 -12.87755 -12.38941 -12.34015 -12.00613 -11.73316 -11.46679 -11.24719 -11.07528 -10.83477 -10.51844 -10.18994 -9.98147 -9.79381 -8.50884 -8.17982 -5.71748 -0.34190 0.23233 1.42274 1.55199 1.65991 1.73697 2.22227 2.51816 2.87352 3.08713 3.23050 3.37368 3.76770 3.85323 3.96452 4.02590 4.04877 4.30480 4.38917 4.49244 4.54024 4.56734 4.70904 4.73343 4.77876 4.78850 4.80243 4.81825 5.00199 5.06777 5.08038 5.14737 5.21905 5.29183 5.32466 5.41388 5.56212 5.60041 5.69681 5.99767 6.31581 6.46676 6.83635 7.09914 7.15891 7.65014 8.15728 8.98594 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.006821 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.725527 B = 4103.958775 C = 5193.820590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 N -0.602 5.602 4 C -0.267 4.267 5 H 0.032 0.968 6 C 0.013 3.987 7 N -0.940 5.940 8 Si 0.871 3.129 9 H -0.177 1.177 10 H -0.337 1.337 11 H -0.265 1.265 12 C 0.152 3.848 13 H 0.066 0.934 14 C -0.146 4.146 15 C 0.106 3.894 16 N -0.701 5.701 17 C 0.556 3.444 18 O -0.558 6.558 19 C 0.028 3.972 20 N -0.464 5.464 21 C 0.063 3.937 22 C -0.126 4.126 23 C -0.087 4.087 24 C -0.083 4.083 25 C -0.105 4.105 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.412 0.588 38 H 0.172 0.828 39 H 0.182 0.818 40 H 0.181 0.819 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.115 -3.776 -10.400 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 N -0.325 5.325 4 C -0.397 4.397 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.582 5.582 8 Si 0.699 3.301 9 H -0.101 1.101 10 H -0.268 1.268 11 H -0.190 1.190 12 C 0.046 3.954 13 H 0.084 0.916 14 C -0.205 4.205 15 C -0.020 4.020 16 N -0.352 5.352 17 C 0.342 3.658 18 O -0.439 6.439 19 C -0.108 4.108 20 N -0.176 5.176 21 C -0.097 4.097 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.086 4.086 25 C -0.162 4.162 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.189 0.811 39 H 0.199 0.801 40 H 0.198 0.802 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.351 -3.635 -10.796 16.082 hybrid contribution 0.677 -0.759 0.980 1.412 sum 12.028 -4.394 -9.817 16.136 Atomic orbital electron populations 1.22320 0.97272 1.00539 1.01709 1.21119 0.93526 0.85931 0.97988 1.44118 1.75799 1.11475 1.01141 1.18406 1.26810 1.02205 0.92235 0.95074 1.26219 0.97927 0.99632 0.94805 1.70024 1.41413 1.45726 1.01040 0.87386 0.86646 0.80078 0.75949 1.10082 1.26771 1.19041 1.20977 0.93052 0.95591 0.85817 0.91596 1.22125 0.96690 1.02300 0.99391 1.22055 0.84226 1.01109 0.94560 1.46141 1.08568 1.59698 1.20768 1.18291 0.83336 0.77885 0.86246 1.90654 1.85432 1.50007 1.17799 1.21032 0.95042 1.02079 0.92678 1.67723 1.30437 1.16154 1.03270 1.23248 0.88645 0.97907 0.99887 1.22785 0.99618 0.95077 0.97021 1.21969 0.98176 0.97815 0.93254 1.21209 0.92768 0.95774 0.98874 1.20913 1.03689 1.00697 0.90883 0.92494 0.94923 0.91151 0.93333 0.96132 0.93133 0.92801 0.90515 0.91987 0.92713 0.90214 0.74941 0.81054 0.80070 0.80178 0.90582 0.89146 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.87 71.98 0.71 -5.14 16 2 C 0.14 5.93 3.89 86.38 0.34 6.27 16 3 N -0.60 -27.10 1.42 -678.01 -0.97 -28.07 16 4 C -0.27 -14.68 9.32 84.03 0.78 -13.89 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.74 5.24 84.86 0.44 1.18 16 7 N -0.94 -58.13 13.97 21.65 0.30 -57.83 16 8 Si 0.87 43.12 23.33 68.60 1.60 44.72 16 9 H -0.18 -7.90 3.29 99.48 0.33 -7.57 16 10 H -0.34 -18.10 7.11 99.48 0.71 -17.39 16 11 H -0.27 -13.02 5.36 99.48 0.53 -12.49 16 12 C 0.15 5.67 2.80 44.99 0.13 5.80 16 13 H 0.07 2.60 7.90 -2.39 -0.02 2.59 16 14 C -0.15 -4.33 8.01 71.99 0.58 -3.75 16 15 C 0.11 3.81 5.08 86.38 0.44 4.25 16 16 N -0.70 -28.14 4.32 -465.65 -2.01 -30.15 16 17 C 0.56 21.65 7.74 86.88 0.67 22.32 16 18 O -0.56 -22.05 13.37 -3.77 -0.05 -22.10 16 19 C 0.03 0.99 6.72 41.89 0.28 1.27 16 20 N -0.46 -16.56 6.43 -184.91 -1.19 -17.74 16 21 C 0.06 1.71 11.04 84.83 0.94 2.65 16 22 C -0.13 -2.38 10.11 22.44 0.23 -2.15 16 23 C -0.09 -1.67 9.82 22.45 0.22 -1.45 16 24 C -0.08 -2.27 5.93 -19.52 -0.12 -2.38 16 25 C -0.11 -2.54 8.63 71.24 0.61 -1.93 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 2.25 5.58 -2.38 -0.01 2.23 16 29 H 0.05 1.91 6.65 -2.39 -0.02 1.89 16 30 H 0.02 0.98 4.95 -2.39 -0.01 0.97 16 31 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.75 6.23 -2.38 -0.01 1.73 16 35 H 0.05 2.02 6.81 -2.39 -0.02 2.00 16 36 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16 37 H 0.41 18.13 4.83 -92.71 -0.45 17.69 16 38 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.18 1.91 8.06 -2.92 -0.02 1.88 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.51 8.04 -2.38 -0.02 1.49 16 43 H 0.07 2.06 6.05 -2.39 -0.01 2.05 16 Total: -1.00 -71.66 329.18 3.95 -67.71 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.01 Total: 30.42 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.25 Total: 13.04 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -3.86 Total: -133.79 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.60 Total: 44.72 kcal Total: -71.66 3.95 -67.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152654421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.899 kcal (2) G-P(sol) polarization free energy of solvation -71.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds