Wall clock time and date at job start Tue Mar 31 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47067 * 2 1 4 4 C 1.36934 * 120.00076 * 275.91195 * 3 2 1 5 5 H 1.08004 * 119.99668 * 34.07788 * 4 3 2 6 6 C 1.38811 * 120.00398 * 214.07374 * 4 3 2 7 7 N 1.31617 * 119.99519 * 17.04426 * 6 4 3 8 8 Si 1.86795 * 120.00395 * 197.04104 * 6 4 3 9 9 H 1.48501 * 109.47233 * 59.99795 * 8 6 4 10 10 H 1.48497 * 109.47334 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47083 * 300.00277 * 8 6 4 12 12 C 1.46508 * 120.00017 * 95.91064 * 3 2 1 13 13 H 1.09002 * 109.46969 * 177.14571 * 12 3 2 14 14 C 1.53000 * 109.46622 * 57.15114 * 12 3 2 15 15 C 1.53000 * 109.47299 * 297.14943 * 12 3 2 16 16 N 1.46497 * 109.47086 * 305.00061 * 15 12 3 17 17 C 1.34775 * 119.99915 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99968 * 179.97438 * 17 16 15 20 20 C 1.50698 * 109.47152 * 179.97438 * 19 17 16 21 21 C 1.38680 * 120.41794 * 269.72205 * 20 19 17 22 22 C 1.38630 * 118.41643 * 179.78049 * 21 20 19 23 23 C 1.38221 * 119.16219 * 0.51448 * 22 21 20 24 24 N 1.31855 * 120.76465 * 359.72450 * 23 22 21 25 25 C 1.31890 * 121.72769 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47070 * 299.99850 * 1 2 3 28 28 H 1.08994 * 109.47172 * 60.00449 * 1 2 3 29 29 H 1.08998 * 109.47522 * 239.99545 * 2 1 3 30 30 H 1.09008 * 109.47311 * 119.99581 * 2 1 3 31 31 H 0.97005 * 120.00024 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47633 * 299.99495 * 14 12 3 33 33 H 1.08992 * 109.47541 * 60.00200 * 14 12 3 34 34 H 1.09007 * 109.46609 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.46587 * 64.99923 * 15 12 3 36 36 H 1.08994 * 109.47331 * 184.99772 * 15 12 3 37 37 H 0.97003 * 120.00082 * 359.97438 * 16 15 12 38 38 H 1.08995 * 109.47215 * 300.00339 * 19 17 16 39 39 H 1.09001 * 109.47087 * 60.00030 * 19 17 16 40 40 H 1.08002 * 120.78908 * 0.02562 * 21 20 19 41 41 H 1.07997 * 120.41526 * 180.21889 * 22 21 20 42 42 H 1.08001 * 119.62068 * 179.74254 * 23 22 21 43 43 H 1.08000 * 119.62100 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8926 -1.9760 6 6 3.1560 2.9880 -1.3517 7 7 4.1988 2.9695 -0.5488 8 14 3.0551 4.2527 -2.7226 9 1 1.8458 5.0934 -2.5325 10 1 4.2657 5.1121 -2.6934 11 1 2.9736 3.5574 -4.0324 12 6 2.3857 2.0283 1.2621 13 1 2.7712 3.0275 1.0593 14 6 3.4621 1.1994 1.9656 15 6 1.1518 2.1304 2.1610 16 7 0.0790 2.8210 1.4410 17 6 -1.1105 3.0272 2.0402 18 8 -1.2930 2.6407 3.1752 19 6 -2.2140 3.7382 1.2998 20 6 -3.4294 3.8386 2.1852 21 6 -4.3916 2.8400 2.1728 22 6 -5.4906 2.9725 3.0073 23 6 -5.5955 4.0926 3.8103 24 7 -4.6633 5.0250 3.7923 25 6 -3.6021 4.9299 3.0150 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 4.9147 3.6130 -0.6687 32 1 3.0767 0.2003 2.1684 33 1 4.3411 1.1267 1.3253 34 1 3.7358 1.6811 2.9044 35 1 0.8190 1.1296 2.4362 36 1 1.4037 2.6901 3.0617 37 1 0.2249 3.1305 0.5334 38 1 -1.8809 4.7388 1.0245 39 1 -2.4664 3.1786 0.3991 40 1 -4.2852 1.9778 1.5312 41 1 -6.2575 2.2123 3.0262 42 1 -6.4506 4.2053 4.4602 43 1 -2.8591 5.7136 3.0278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152768839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:44 Heat of formation + Delta-G solvation = 11.145773 kcal Electronic energy + Delta-G solvation = -23741.830668 eV Core-core repulsion = 20401.450776 eV Total energy + Delta-G solvation = -3340.379893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.33659 -39.02188 -36.93489 -33.67668 -33.48341 -31.97035 -31.90492 -31.07815 -28.39026 -28.00673 -25.18630 -23.97589 -23.58414 -22.40415 -21.66747 -19.83045 -19.24459 -17.22025 -17.00937 -16.52736 -16.41390 -15.83489 -15.01645 -14.81219 -14.61628 -14.17415 -13.91084 -13.58932 -13.31601 -13.07664 -12.95535 -12.71974 -12.56099 -12.34310 -11.90333 -11.83507 -11.59959 -11.46792 -11.10856 -11.01801 -10.83714 -10.70656 -10.35668 -10.10595 -9.86736 -9.68682 -9.53826 -9.48335 -9.45031 -8.92675 -8.56018 -8.40045 -6.69979 -5.92632 -3.42866 1.08302 1.27766 3.04698 3.27761 3.34946 3.36459 3.61714 3.99604 4.37440 4.39799 4.68867 4.76466 4.96355 4.99674 5.21953 5.27939 5.31418 5.38596 5.47499 5.67454 5.75407 5.88613 6.01552 6.06258 6.16308 6.22409 6.24017 6.34342 6.45267 6.49726 6.58625 6.63757 6.67231 6.79360 6.87227 7.05791 7.11548 7.43671 7.52428 7.71359 7.94523 8.14332 8.39510 8.72875 9.11490 9.72821 10.30792 11.13509 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.004189 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.669010 B = 6682.148366 C = 7184.857771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.266 4.266 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.174 3.826 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.700 5.700 17 C 0.507 3.493 18 O -0.555 6.555 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.063 4.063 22 C -0.173 4.173 23 C 0.089 3.911 24 N -0.486 5.486 25 C 0.111 3.889 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.256 0.744 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.152 0.848 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.017 0.305 3.427 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.395 4.395 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.067 3.933 13 H 0.120 0.880 14 C -0.204 4.204 15 C -0.023 4.023 16 N -0.350 5.350 17 C 0.292 3.708 18 O -0.434 6.434 19 C -0.144 4.144 20 C -0.107 4.107 21 C -0.089 4.089 22 C -0.192 4.192 23 C -0.067 4.067 24 N -0.194 5.194 25 C -0.046 4.046 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.249 0.751 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.032 0.855 4.758 13.900 hybrid contribution 0.244 -0.068 -1.729 1.748 sum -12.787 0.787 3.029 13.165 Atomic orbital electron populations 1.22423 1.00122 0.98932 1.01367 1.20766 0.91635 0.87529 0.98746 1.43863 1.75939 1.08226 1.02285 1.19033 1.07877 1.18900 0.93727 0.91936 1.25176 0.94460 1.01330 0.97777 1.69992 1.07209 1.36284 1.39681 0.86472 0.77019 0.81576 0.82237 1.20915 1.21675 1.20866 1.20529 0.89072 0.99445 0.84294 0.88018 1.22001 1.01070 0.98146 0.99147 1.22165 0.89204 0.95604 0.95334 1.45965 1.12180 1.57850 1.19039 1.20323 0.83488 0.80125 0.86883 1.90680 1.81851 1.52215 1.18654 1.20636 0.91986 1.03294 0.98451 1.20353 0.95807 0.95910 0.98679 1.21459 0.92820 0.97475 0.97166 1.22078 0.99295 0.99685 0.98177 1.22699 0.97161 0.90007 0.96879 1.67666 1.02262 1.29404 1.20091 1.22597 0.94567 0.96581 0.90876 0.94892 0.93124 0.93463 0.94141 0.94482 0.93437 0.95006 0.90632 0.94700 0.92973 0.93107 0.75143 0.87725 0.87796 0.85016 0.84959 0.83053 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.95 37.16 0.37 -2.55 16 2 C 0.14 2.74 5.75 -4.04 -0.02 2.72 16 3 N -0.58 -12.64 1.88 -165.65 -0.31 -12.96 16 4 C -0.27 -6.36 9.07 -15.06 -0.14 -6.50 16 5 H 0.06 1.50 7.89 -52.48 -0.41 1.09 16 6 C 0.01 0.32 4.86 -17.43 -0.08 0.24 16 7 N -0.89 -23.09 10.90 55.49 0.61 -22.49 16 8 Si 0.90 19.69 29.59 -169.99 -5.03 14.66 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.17 3.62 1.95 -67.93 -0.13 3.49 16 13 H 0.10 2.41 5.94 -51.93 -0.31 2.11 16 14 C -0.14 -2.88 9.05 37.16 0.34 -2.55 16 15 C 0.10 1.93 4.36 -4.04 -0.02 1.91 16 16 N -0.70 -12.06 4.28 -60.30 -0.26 -12.32 16 17 C 0.51 8.36 7.78 -10.98 -0.09 8.27 16 18 O -0.55 -11.11 16.03 5.56 0.09 -11.02 16 19 C -0.10 -1.28 5.86 -29.03 -0.17 -1.45 16 20 C -0.11 -1.37 4.39 -104.48 -0.46 -1.83 16 21 C -0.06 -0.76 9.86 -39.27 -0.39 -1.14 16 22 C -0.17 -1.85 10.11 -39.44 -0.40 -2.25 16 23 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 24 N -0.49 -6.75 10.36 -13.25 -0.14 -6.89 16 25 C 0.11 1.50 10.86 -17.55 -0.19 1.31 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.90 5.32 -51.93 -0.28 0.62 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.04 0.71 6.29 -51.92 -0.33 0.38 16 31 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.03 0.59 6.56 -51.93 -0.34 0.25 16 33 H 0.07 1.71 7.69 -51.93 -0.40 1.31 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 1.01 6.98 -51.93 -0.36 0.65 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.41 7.21 7.74 -40.82 -0.32 6.89 16 38 H 0.10 1.10 8.09 -51.93 -0.42 0.68 16 39 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -28.78 351.18 -7.85 -36.63 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.52 Total: 8.59 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.58 Total: 0.50 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.10 Total: -54.65 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.78 -7.85 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152768839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.774 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds