Wall clock time and date at job start Tue Mar 31 2020 06:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47067 * 2 1 4 4 C 1.36934 * 120.00076 * 275.91195 * 3 2 1 5 5 H 1.08004 * 119.99668 * 34.07788 * 4 3 2 6 6 C 1.38811 * 120.00398 * 214.07374 * 4 3 2 7 7 N 1.31617 * 119.99519 * 17.04426 * 6 4 3 8 8 Si 1.86795 * 120.00395 * 197.04104 * 6 4 3 9 9 H 1.48501 * 109.47233 * 59.99795 * 8 6 4 10 10 H 1.48497 * 109.47334 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47083 * 300.00277 * 8 6 4 12 12 C 1.46508 * 120.00017 * 95.91064 * 3 2 1 13 13 H 1.09002 * 109.46969 * 177.14571 * 12 3 2 14 14 C 1.53000 * 109.46622 * 57.15114 * 12 3 2 15 15 C 1.53000 * 109.47299 * 297.14943 * 12 3 2 16 16 N 1.46497 * 109.47086 * 305.00061 * 15 12 3 17 17 C 1.34775 * 119.99915 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99968 * 179.97438 * 17 16 15 20 20 C 1.50698 * 109.47152 * 179.97438 * 19 17 16 21 21 C 1.38680 * 120.41794 * 269.72205 * 20 19 17 22 22 C 1.38630 * 118.41643 * 179.78049 * 21 20 19 23 23 C 1.38221 * 119.16219 * 0.51448 * 22 21 20 24 24 N 1.31855 * 120.76465 * 359.72450 * 23 22 21 25 25 C 1.31890 * 121.72769 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47070 * 299.99850 * 1 2 3 28 28 H 1.08994 * 109.47172 * 60.00449 * 1 2 3 29 29 H 1.08998 * 109.47522 * 239.99545 * 2 1 3 30 30 H 1.09008 * 109.47311 * 119.99581 * 2 1 3 31 31 H 0.97005 * 120.00024 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47633 * 299.99495 * 14 12 3 33 33 H 1.08992 * 109.47541 * 60.00200 * 14 12 3 34 34 H 1.09007 * 109.46609 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.46587 * 64.99923 * 15 12 3 36 36 H 1.08994 * 109.47331 * 184.99772 * 15 12 3 37 37 H 0.97003 * 120.00082 * 359.97438 * 16 15 12 38 38 H 1.08995 * 109.47215 * 300.00339 * 19 17 16 39 39 H 1.09001 * 109.47087 * 60.00030 * 19 17 16 40 40 H 1.08002 * 120.78908 * 0.02562 * 21 20 19 41 41 H 1.07997 * 120.41526 * 180.21889 * 22 21 20 42 42 H 1.08001 * 119.62068 * 179.74254 * 23 22 21 43 43 H 1.08000 * 119.62100 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8926 -1.9760 6 6 3.1560 2.9880 -1.3517 7 7 4.1988 2.9695 -0.5488 8 14 3.0551 4.2527 -2.7226 9 1 1.8458 5.0934 -2.5325 10 1 4.2657 5.1121 -2.6934 11 1 2.9736 3.5574 -4.0324 12 6 2.3857 2.0283 1.2621 13 1 2.7712 3.0275 1.0593 14 6 3.4621 1.1994 1.9656 15 6 1.1518 2.1304 2.1610 16 7 0.0790 2.8210 1.4410 17 6 -1.1105 3.0272 2.0402 18 8 -1.2930 2.6407 3.1752 19 6 -2.2140 3.7382 1.2998 20 6 -3.4294 3.8386 2.1852 21 6 -4.3916 2.8400 2.1728 22 6 -5.4906 2.9725 3.0073 23 6 -5.5955 4.0926 3.8103 24 7 -4.6633 5.0250 3.7923 25 6 -3.6021 4.9299 3.0150 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 4.9147 3.6130 -0.6687 32 1 3.0767 0.2003 2.1684 33 1 4.3411 1.1267 1.3253 34 1 3.7358 1.6811 2.9044 35 1 0.8190 1.1296 2.4362 36 1 1.4037 2.6901 3.0617 37 1 0.2249 3.1305 0.5334 38 1 -1.8809 4.7388 1.0245 39 1 -2.4664 3.1786 0.3991 40 1 -4.2852 1.9778 1.5312 41 1 -6.2575 2.2123 3.0262 42 1 -6.4506 4.2053 4.4602 43 1 -2.8591 5.7136 3.0278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152768839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:43 Heat of formation + Delta-G solvation = -5.037858 kcal Electronic energy + Delta-G solvation = -23742.532443 eV Core-core repulsion = 20401.450776 eV Total energy + Delta-G solvation = -3341.081667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34074 -40.30422 -38.54741 -35.17907 -34.50706 -33.70756 -32.87393 -32.57477 -29.96052 -29.21475 -26.60057 -25.75344 -24.48330 -23.53071 -23.11264 -21.16147 -20.89628 -18.76751 -18.05617 -17.81017 -17.40070 -17.18474 -16.53025 -16.36150 -15.78770 -15.63211 -15.32468 -14.85081 -14.35024 -14.31130 -14.17456 -13.96303 -13.91050 -13.87923 -13.47814 -13.27437 -12.92775 -12.76334 -12.73179 -12.50604 -12.47732 -12.30911 -12.07131 -11.82611 -11.33898 -11.15335 -10.98396 -10.64004 -10.40436 -10.39272 -9.87937 -9.85389 -8.49196 -7.79215 -5.30881 0.18387 0.38099 1.53776 1.56954 1.61354 1.75753 2.42964 2.57591 2.96924 3.35251 3.52659 3.67785 3.76107 3.94231 4.08957 4.12946 4.13817 4.30048 4.48675 4.50739 4.58346 4.61410 4.70669 4.78549 4.81978 4.88531 4.91526 4.93913 5.00943 5.08008 5.20432 5.24194 5.34552 5.35432 5.55071 5.63299 5.73322 5.79083 5.81244 5.86648 6.53063 6.78094 7.04383 7.26630 7.39375 7.95244 8.48509 9.24190 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.004189 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.669010 B = 6682.148366 C = 7184.857771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.262 4.262 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.304 1.304 11 H -0.284 1.284 12 C 0.180 3.820 13 H 0.073 0.927 14 C -0.136 4.136 15 C 0.117 3.883 16 N -0.699 5.699 17 C 0.509 3.491 18 O -0.591 6.591 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.169 4.169 23 C 0.080 3.920 24 N -0.514 5.514 25 C 0.091 3.909 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.041 0.959 31 H 0.248 0.752 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.412 0.588 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.180 0.820 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.151 -0.157 3.061 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.228 4.228 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.231 1.231 11 H -0.210 1.210 12 C 0.073 3.927 13 H 0.091 0.909 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.349 5.349 17 C 0.296 3.704 18 O -0.472 6.472 19 C -0.134 4.134 20 C -0.122 4.122 21 C -0.101 4.101 22 C -0.188 4.188 23 C -0.077 4.077 24 N -0.222 5.222 25 C -0.066 4.066 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.249 0.751 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.182 0.818 42 H 0.197 0.803 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.192 0.387 4.379 15.815 hybrid contribution 0.863 0.000 -1.577 1.798 sum -14.328 0.388 2.802 14.605 Atomic orbital electron populations 1.22223 0.97858 1.00244 1.00947 1.20851 0.93259 0.86285 0.98440 1.43987 1.76095 1.09095 1.02025 1.19223 1.07207 1.18513 0.94245 0.91887 1.25730 0.94399 1.03028 0.99634 1.70134 1.07777 1.36802 1.41284 0.85605 0.76658 0.79648 0.79977 1.19651 1.23064 1.21034 1.20363 0.89966 0.97936 0.84427 0.90919 1.21879 0.99660 0.98938 0.99067 1.21842 0.88815 0.95568 0.94723 1.45936 1.12275 1.57828 1.18889 1.20953 0.83662 0.79286 0.86457 1.90663 1.82425 1.53748 1.20387 1.20629 0.90240 1.04070 0.98428 1.20445 0.96354 0.96294 0.99063 1.21803 0.92985 0.97651 0.97630 1.22450 0.99492 0.99931 0.96934 1.23257 0.97389 0.89811 0.97226 1.67666 1.03028 1.30744 1.20803 1.22782 0.95014 0.97323 0.91454 0.92727 0.93601 0.93668 0.95214 0.94033 0.94300 0.93795 0.93618 0.93222 0.93327 0.93419 0.75140 0.85772 0.85632 0.83463 0.81768 0.80350 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.95 71.98 0.72 -4.23 16 2 C 0.14 5.22 5.75 86.38 0.50 5.71 16 3 N -0.59 -25.34 1.88 -678.01 -1.28 -26.62 16 4 C -0.26 -12.38 9.07 84.03 0.76 -11.62 16 5 H 0.06 2.95 7.89 -2.91 -0.02 2.93 16 6 C -0.03 -1.49 4.86 84.86 0.41 -1.08 16 7 N -0.92 -48.34 10.90 21.65 0.24 -48.10 16 8 Si 0.95 40.37 29.59 68.60 2.03 42.40 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.18 7.49 1.95 44.99 0.09 7.58 16 13 H 0.07 3.50 5.94 -2.39 -0.01 3.49 16 14 C -0.14 -5.44 9.05 71.98 0.65 -4.78 16 15 C 0.12 4.31 4.36 86.38 0.38 4.69 16 16 N -0.70 -23.34 4.28 -463.07 -1.98 -25.32 16 17 C 0.51 16.10 7.78 87.66 0.68 16.78 16 18 O -0.59 -23.14 16.03 -3.03 -0.05 -23.19 16 19 C -0.09 -2.13 5.86 29.10 0.17 -1.96 16 20 C -0.12 -2.92 4.39 -19.77 -0.09 -3.00 16 21 C -0.07 -1.61 9.86 22.47 0.22 -1.39 16 22 C -0.17 -3.16 10.11 22.36 0.23 -2.93 16 23 C 0.08 1.68 11.18 84.69 0.95 2.63 16 24 N -0.51 -13.78 10.36 -195.85 -2.03 -15.81 16 25 C 0.09 2.38 10.86 84.67 0.92 3.30 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.52 5.32 -2.39 -0.01 1.51 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 30 H 0.04 1.53 6.29 -2.38 -0.01 1.51 16 31 H 0.25 13.03 8.31 -92.70 -0.77 12.25 16 32 H 0.04 1.60 6.56 -2.39 -0.02 1.59 16 33 H 0.04 2.09 7.69 -2.39 -0.02 2.07 16 34 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.05 1.84 6.98 -2.39 -0.02 1.82 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 13.91 7.74 -92.71 -0.72 13.19 16 38 H 0.12 2.34 8.09 -2.39 -0.02 2.32 16 39 H 0.13 2.32 8.09 -2.39 -0.02 2.30 16 40 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 42 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -61.68 351.18 3.80 -57.88 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.29 Total: 29.08 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.58 Total: 9.68 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -5.05 Total: -115.85 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -61.68 3.80 -57.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152768839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.838 kcal (2) G-P(sol) polarization free energy of solvation -61.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds