Wall clock time and date at job start Tue Mar 31 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47005 * 2 1 4 4 C 1.36936 * 120.00476 * 279.14081 * 3 2 1 5 5 H 1.08003 * 119.99835 * 28.94227 * 4 3 2 6 6 C 1.38812 * 120.00301 * 208.95292 * 4 3 2 7 7 N 1.31628 * 120.00029 * 29.75678 * 6 4 3 8 8 Si 1.86799 * 120.00302 * 209.75560 * 6 4 3 9 9 H 1.48499 * 109.46771 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46961 * 119.99807 * 8 6 4 11 11 H 1.48494 * 109.47461 * 240.00070 * 8 6 4 12 12 C 1.46504 * 119.99860 * 99.14081 * 3 2 1 13 13 H 1.09003 * 109.47247 * 172.35772 * 12 3 2 14 14 C 1.52995 * 109.47416 * 52.35712 * 12 3 2 15 15 C 1.53005 * 109.47049 * 292.35200 * 12 3 2 16 16 N 1.46495 * 109.47373 * 305.00230 * 15 12 3 17 17 C 1.34776 * 120.00118 * 179.97438 * 16 15 12 18 18 O 1.21785 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.41511 * 120.00321 * 179.97438 * 17 16 15 20 20 C 1.35614 * 120.00196 * 185.34777 * 19 17 16 21 21 C 1.41670 * 120.00148 * 12.07557 * 20 19 17 22 22 C 1.38283 * 126.25900 * 211.72200 * 21 20 19 23 23 C 1.39789 * 107.07661 * 179.87483 * 22 21 20 24 24 C 1.35493 * 107.91248 * 0.38872 * 23 22 21 25 25 N 1.35759 * 108.91195 * 359.75431 * 24 23 22 26 26 H 0.97003 * 125.69265 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.46767 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47322 * 299.99874 * 1 2 3 29 29 H 1.08999 * 109.47101 * 60.00131 * 1 2 3 30 30 H 1.09004 * 109.46820 * 120.00269 * 2 1 3 31 31 H 1.09002 * 109.47076 * 239.99757 * 2 1 3 32 32 H 0.96992 * 119.99969 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46961 * 300.00234 * 14 12 3 34 34 H 1.08999 * 109.46990 * 59.99825 * 14 12 3 35 35 H 1.08991 * 109.47327 * 180.02562 * 14 12 3 36 36 H 1.09003 * 109.46551 * 65.00280 * 15 12 3 37 37 H 1.08996 * 109.47490 * 184.99776 * 15 12 3 38 38 H 0.96997 * 120.00305 * 0.02562 * 16 15 12 39 39 H 1.07998 * 119.99712 * 5.34906 * 19 17 16 40 40 H 1.08007 * 120.00205 * 192.07197 * 20 19 17 41 41 H 1.07999 * 126.46414 * 0.02562 * 22 21 20 42 42 H 1.08001 * 126.04004 * 180.10615 * 23 22 21 43 43 H 1.08008 * 125.54907 * 179.73656 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0690 2.0896 -1.1708 5 1 1.3701 1.8712 -1.9647 6 6 3.0188 3.0881 -1.3374 7 7 4.1790 3.0022 -0.7218 8 14 2.6503 4.5539 -2.4352 9 1 1.2869 4.4139 -3.0067 10 1 2.7254 5.8027 -1.6352 11 1 3.6455 4.6105 -3.5359 12 6 2.4525 2.0046 1.2527 13 1 2.9052 2.9729 1.0389 14 6 3.4786 1.1031 1.9422 15 6 1.2445 2.1982 2.1715 16 7 0.2120 2.9615 1.4663 17 6 -0.9498 3.2538 2.0839 18 8 -1.1410 2.8837 3.2283 19 6 -1.9470 3.9916 1.4029 20 6 -3.0696 4.3792 2.0577 21 6 -3.1378 4.2762 3.4690 22 6 -4.2739 4.0271 4.2169 23 6 -3.8851 4.0064 5.5595 24 6 -2.5525 4.2460 5.6112 25 7 -2.0859 4.4118 4.3472 26 1 -1.1651 4.5955 4.1033 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 4.8428 3.6997 -0.8385 33 1 3.0259 0.1349 2.1560 34 1 4.3391 0.9653 1.2876 35 1 3.8012 1.5667 2.8743 36 1 0.8456 1.2248 2.4569 37 1 1.5512 2.7414 3.0653 38 1 0.3640 3.2559 0.5547 39 1 -1.8141 4.2460 0.3618 40 1 -3.9117 4.7664 1.5032 41 1 -5.2727 3.8745 3.8356 42 1 -4.5332 3.8348 6.4062 43 1 -1.9581 4.2972 6.5116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152984788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:52 Heat of formation + Delta-G solvation = 70.273641 kcal Electronic energy + Delta-G solvation = -24131.525862 eV Core-core repulsion = 20793.709946 eV Total energy + Delta-G solvation = -3337.815916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.03847 -39.16314 -37.02510 -33.82612 -33.41589 -31.99162 -31.16525 -30.61894 -28.40115 -28.10679 -25.75920 -24.00966 -22.97144 -21.65453 -20.61959 -20.11670 -19.46261 -19.12816 -17.79175 -16.84751 -16.14728 -15.45713 -14.78314 -14.62622 -14.30585 -14.13201 -13.79301 -13.61149 -13.26291 -13.13372 -12.76479 -12.59243 -12.44445 -12.14832 -12.05500 -11.93284 -11.74888 -11.62426 -11.18333 -11.07554 -10.84964 -10.74649 -10.33865 -10.08944 -9.77670 -9.71248 -9.51842 -9.50317 -8.63967 -8.50730 -8.25848 -7.39385 -6.82861 -5.98786 -3.34619 0.89426 2.85949 3.21341 3.24801 3.37170 3.37390 3.71804 3.74129 3.99734 4.37691 5.10779 5.14971 5.24642 5.33294 5.36716 5.57057 5.68407 5.71374 5.81933 6.01176 6.08633 6.13405 6.19124 6.24811 6.29056 6.40972 6.44127 6.47235 6.49129 6.54251 6.59371 6.74566 6.87810 7.02859 7.12466 7.17649 7.31829 7.36291 7.39538 7.73454 7.86842 8.17724 8.31971 8.74535 9.05789 9.71809 10.28485 11.06916 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.004695 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.650613 B = 5962.382858 C = 6462.184355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 N -0.581 5.581 4 C -0.267 4.267 5 H 0.067 0.933 6 C 0.013 3.987 7 N -0.877 5.877 8 Si 0.881 3.119 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.168 3.832 13 H 0.100 0.900 14 C -0.147 4.147 15 C 0.104 3.896 16 N -0.692 5.692 17 C 0.528 3.472 18 O -0.567 6.567 19 C -0.239 4.239 20 C 0.010 3.990 21 C 0.022 3.978 22 C -0.165 4.165 23 C -0.221 4.221 24 C 0.010 3.990 25 N -0.492 5.492 26 H 0.417 0.583 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.254 0.746 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.413 0.587 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 2.733 7.403 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.302 5.302 4 C -0.396 4.396 5 H 0.085 0.915 6 C -0.188 4.188 7 N -0.518 5.518 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.060 3.940 13 H 0.118 0.882 14 C -0.206 4.206 15 C -0.022 4.022 16 N -0.340 5.340 17 C 0.319 3.681 18 O -0.451 6.451 19 C -0.261 4.261 20 C -0.011 4.011 21 C -0.091 4.091 22 C -0.190 4.190 23 C -0.245 4.245 24 C -0.128 4.128 25 N -0.085 5.085 26 H 0.258 0.742 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.250 0.750 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.115 2.580 8.081 13.201 hybrid contribution 0.445 0.811 -1.218 1.529 sum -9.669 3.391 6.863 12.333 Atomic orbital electron populations 1.22345 0.99807 0.98922 1.01424 1.20784 0.91849 0.87336 0.98773 1.43936 1.74594 1.08446 1.03209 1.19084 1.11500 1.14110 0.94937 0.91541 1.24931 0.93998 1.01455 0.98424 1.70206 1.03302 1.32539 1.45797 0.86585 0.78332 0.83781 0.80361 1.19986 1.21437 1.21688 1.20562 0.89810 0.99011 0.84572 0.88216 1.22003 1.00637 0.98621 0.99314 1.22128 0.90140 0.94667 0.95305 1.46030 1.15244 1.54074 1.18675 1.17268 0.82719 0.81472 0.86679 1.90835 1.79751 1.56521 1.18006 1.22169 0.97226 1.04721 1.01981 1.20737 0.96601 0.92780 0.90989 1.17983 0.87600 1.13281 0.90256 1.21258 0.96829 1.07729 0.93189 1.20641 0.94643 1.12415 0.96831 1.21889 0.95684 1.07384 0.87885 1.42480 1.09990 1.50599 1.05429 0.74153 0.94816 0.93354 0.93346 0.94253 0.94277 0.93609 0.94470 0.91138 0.94390 0.92869 0.93322 0.75029 0.85139 0.84258 0.84911 0.85227 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 10.07 37.16 0.37 -2.65 16 2 C 0.14 2.78 5.84 -4.04 -0.02 2.76 16 3 N -0.58 -12.79 1.99 -165.66 -0.33 -13.12 16 4 C -0.27 -6.52 8.68 -15.06 -0.13 -6.65 16 5 H 0.07 1.65 7.98 -52.48 -0.42 1.23 16 6 C 0.01 0.32 4.57 -17.43 -0.08 0.24 16 7 N -0.88 -23.06 11.82 55.49 0.66 -22.41 16 8 Si 0.88 19.63 29.64 -169.99 -5.04 14.59 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.17 3.50 2.17 -67.93 -0.15 3.35 16 13 H 0.10 2.37 5.76 -51.93 -0.30 2.07 16 14 C -0.15 -2.86 9.04 37.16 0.34 -2.52 16 15 C 0.10 1.94 4.48 -4.04 -0.02 1.92 16 16 N -0.69 -12.38 4.81 -63.25 -0.30 -12.69 16 17 C 0.53 9.04 6.91 -15.01 -0.10 8.93 16 18 O -0.57 -10.72 11.54 5.11 0.06 -10.66 16 19 C -0.24 -3.42 9.84 -39.27 -0.39 -3.80 16 20 C 0.01 0.13 9.95 -39.21 -0.39 -0.26 16 21 C 0.02 0.32 5.51 -83.90 -0.46 -0.15 16 22 C -0.16 -2.26 10.86 -38.99 -0.42 -2.68 16 23 C -0.22 -2.93 10.81 -39.98 -0.43 -3.36 16 24 C 0.01 0.13 11.90 -16.79 -0.20 -0.07 16 25 N -0.49 -7.20 3.94 -10.56 -0.04 -7.24 16 26 H 0.42 6.16 6.95 -40.82 -0.28 5.87 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.92 6.05 -51.93 -0.31 0.60 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.75 6.06 -51.93 -0.31 0.44 16 31 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.04 0.67 6.41 -51.93 -0.33 0.34 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 1.04 7.15 -51.93 -0.37 0.67 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.41 7.75 7.42 -40.82 -0.30 7.45 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -27.79 346.91 -8.28 -36.07 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.42 Total: 15.16 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.09 Total: -4.93 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.02 Total: -55.46 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.04 Total: 14.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.79 -8.28 -36.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152984788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.345 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds