Wall clock time and date at job start Tue Mar 31 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47005 * 2 1 4 4 C 1.36936 * 120.00476 * 279.14081 * 3 2 1 5 5 H 1.08003 * 119.99835 * 28.94227 * 4 3 2 6 6 C 1.38812 * 120.00301 * 208.95292 * 4 3 2 7 7 N 1.31628 * 120.00029 * 29.75678 * 6 4 3 8 8 Si 1.86799 * 120.00302 * 209.75560 * 6 4 3 9 9 H 1.48499 * 109.46771 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46961 * 119.99807 * 8 6 4 11 11 H 1.48494 * 109.47461 * 240.00070 * 8 6 4 12 12 C 1.46504 * 119.99860 * 99.14081 * 3 2 1 13 13 H 1.09003 * 109.47247 * 172.35772 * 12 3 2 14 14 C 1.52995 * 109.47416 * 52.35712 * 12 3 2 15 15 C 1.53005 * 109.47049 * 292.35200 * 12 3 2 16 16 N 1.46495 * 109.47373 * 305.00230 * 15 12 3 17 17 C 1.34776 * 120.00118 * 179.97438 * 16 15 12 18 18 O 1.21785 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.41511 * 120.00321 * 179.97438 * 17 16 15 20 20 C 1.35614 * 120.00196 * 185.34777 * 19 17 16 21 21 C 1.41670 * 120.00148 * 12.07557 * 20 19 17 22 22 C 1.38283 * 126.25900 * 211.72200 * 21 20 19 23 23 C 1.39789 * 107.07661 * 179.87483 * 22 21 20 24 24 C 1.35493 * 107.91248 * 0.38872 * 23 22 21 25 25 N 1.35759 * 108.91195 * 359.75431 * 24 23 22 26 26 H 0.97003 * 125.69265 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.46767 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47322 * 299.99874 * 1 2 3 29 29 H 1.08999 * 109.47101 * 60.00131 * 1 2 3 30 30 H 1.09004 * 109.46820 * 120.00269 * 2 1 3 31 31 H 1.09002 * 109.47076 * 239.99757 * 2 1 3 32 32 H 0.96992 * 119.99969 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46961 * 300.00234 * 14 12 3 34 34 H 1.08999 * 109.46990 * 59.99825 * 14 12 3 35 35 H 1.08991 * 109.47327 * 180.02562 * 14 12 3 36 36 H 1.09003 * 109.46551 * 65.00280 * 15 12 3 37 37 H 1.08996 * 109.47490 * 184.99776 * 15 12 3 38 38 H 0.96997 * 120.00305 * 0.02562 * 16 15 12 39 39 H 1.07998 * 119.99712 * 5.34906 * 19 17 16 40 40 H 1.08007 * 120.00205 * 192.07197 * 20 19 17 41 41 H 1.07999 * 126.46414 * 0.02562 * 22 21 20 42 42 H 1.08001 * 126.04004 * 180.10615 * 23 22 21 43 43 H 1.08008 * 125.54907 * 179.73656 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0690 2.0896 -1.1708 5 1 1.3701 1.8712 -1.9647 6 6 3.0188 3.0881 -1.3374 7 7 4.1790 3.0022 -0.7218 8 14 2.6503 4.5539 -2.4352 9 1 1.2869 4.4139 -3.0067 10 1 2.7254 5.8027 -1.6352 11 1 3.6455 4.6105 -3.5359 12 6 2.4525 2.0046 1.2527 13 1 2.9052 2.9729 1.0389 14 6 3.4786 1.1031 1.9422 15 6 1.2445 2.1982 2.1715 16 7 0.2120 2.9615 1.4663 17 6 -0.9498 3.2538 2.0839 18 8 -1.1410 2.8837 3.2283 19 6 -1.9470 3.9916 1.4029 20 6 -3.0696 4.3792 2.0577 21 6 -3.1378 4.2762 3.4690 22 6 -4.2739 4.0271 4.2169 23 6 -3.8851 4.0064 5.5595 24 6 -2.5525 4.2460 5.6112 25 7 -2.0859 4.4118 4.3472 26 1 -1.1651 4.5955 4.1033 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 4.8428 3.6997 -0.8385 33 1 3.0259 0.1349 2.1560 34 1 4.3391 0.9653 1.2876 35 1 3.8012 1.5667 2.8743 36 1 0.8456 1.2248 2.4569 37 1 1.5512 2.7414 3.0653 38 1 0.3640 3.2559 0.5547 39 1 -1.8141 4.2460 0.3618 40 1 -3.9117 4.7664 1.5032 41 1 -5.2727 3.8745 3.8356 42 1 -4.5332 3.8348 6.4062 43 1 -1.9581 4.2972 6.5116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152984788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:51 Heat of formation + Delta-G solvation = 55.554058 kcal Electronic energy + Delta-G solvation = -24132.164151 eV Core-core repulsion = 20793.709946 eV Total energy + Delta-G solvation = -3338.454205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11610 -40.46286 -38.64112 -35.26548 -34.56919 -33.80999 -32.71889 -31.66200 -30.01904 -29.33988 -27.13418 -25.82357 -24.20142 -23.21556 -21.76637 -21.13205 -21.06734 -20.37685 -19.08732 -18.49396 -17.41491 -16.98891 -16.39312 -16.18639 -15.61584 -15.47165 -15.28287 -14.74841 -14.55434 -14.36689 -14.17659 -14.04018 -13.77641 -13.67461 -13.51863 -13.20087 -13.02373 -12.88262 -12.79902 -12.77354 -12.56094 -12.39097 -12.05180 -11.82686 -11.44853 -11.18619 -10.82439 -10.78911 -10.39892 -9.92114 -9.45636 -8.65228 -8.45272 -7.87954 -5.25239 -0.18142 1.45911 1.54102 1.60707 1.80015 2.14580 2.50428 2.55612 2.64982 2.74738 3.21787 3.62959 4.08781 4.19188 4.25001 4.42160 4.43599 4.54508 4.59671 4.62537 4.66812 4.72635 4.75705 4.84333 4.84508 4.94297 5.00834 5.13121 5.18247 5.22127 5.30214 5.46288 5.48411 5.52220 5.60038 5.66104 5.76879 5.78642 6.17371 6.34657 6.43672 6.80390 6.80626 7.18684 7.40200 7.91224 8.43439 9.15520 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.004695 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.650613 B = 5962.382858 C = 6462.184355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.137 3.863 3 N -0.589 5.589 4 C -0.263 4.263 5 H 0.061 0.939 6 C -0.027 4.027 7 N -0.906 5.906 8 Si 0.937 3.063 9 H -0.264 1.264 10 H -0.291 1.291 11 H -0.302 1.302 12 C 0.172 3.828 13 H 0.071 0.929 14 C -0.138 4.138 15 C 0.120 3.880 16 N -0.697 5.697 17 C 0.529 3.471 18 O -0.588 6.588 19 C -0.265 4.265 20 C 0.033 3.967 21 C -0.010 4.010 22 C -0.169 4.169 23 C -0.233 4.233 24 C 0.001 3.999 25 N -0.502 5.502 26 H 0.413 0.587 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.249 0.751 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.408 0.592 39 H 0.145 0.855 40 H 0.177 0.823 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 2.914 7.894 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.011 3.989 3 N -0.310 5.310 4 C -0.393 4.393 5 H 0.079 0.921 6 C -0.225 4.225 7 N -0.550 5.550 8 Si 0.766 3.234 9 H -0.188 1.188 10 H -0.218 1.218 11 H -0.229 1.229 12 C 0.065 3.935 13 H 0.089 0.911 14 C -0.197 4.197 15 C -0.006 4.006 16 N -0.345 5.345 17 C 0.322 3.678 18 O -0.474 6.474 19 C -0.287 4.287 20 C 0.012 3.988 21 C -0.122 4.122 22 C -0.194 4.194 23 C -0.257 4.257 24 C -0.137 4.137 25 N -0.094 5.094 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.244 0.756 39 H 0.163 0.837 40 H 0.194 0.806 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.219 2.752 8.573 15.178 hybrid contribution 1.014 0.711 -1.261 1.768 sum -11.206 3.464 7.312 13.821 Atomic orbital electron populations 1.22150 0.98070 1.00114 1.00544 1.20859 0.93045 0.86285 0.98667 1.44061 1.74695 1.09237 1.03039 1.19199 1.10589 1.14106 0.95404 0.92142 1.25447 0.93868 1.03245 0.99959 1.70303 1.04033 1.32940 1.47704 0.85708 0.78133 0.81123 0.78484 1.18819 1.21760 1.22946 1.20457 0.90703 0.97735 0.84623 0.91122 1.21881 0.99227 0.99249 0.99321 1.21807 0.89473 0.94561 0.94795 1.46001 1.15582 1.54498 1.18395 1.17663 0.82634 0.81154 0.86397 1.90821 1.80094 1.57519 1.18923 1.22134 0.97245 1.06560 1.02735 1.21180 0.96869 0.90229 0.90495 1.18446 0.87983 1.14576 0.91204 1.21665 0.97575 1.06700 0.93434 1.21019 0.94966 1.12180 0.97514 1.22432 0.96340 1.06573 0.88320 1.42581 1.09905 1.50900 1.06046 0.74671 0.92563 0.94137 0.94165 0.93339 0.95364 0.94193 0.93183 0.93999 0.92539 0.93529 0.92966 0.75583 0.83690 0.80572 0.82830 0.83208 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.07 71.99 0.72 -4.52 16 2 C 0.14 5.39 5.84 86.38 0.50 5.90 16 3 N -0.59 -25.93 1.99 -678.01 -1.35 -27.27 16 4 C -0.26 -12.85 8.68 84.03 0.73 -12.12 16 5 H 0.06 3.00 7.98 -2.91 -0.02 2.97 16 6 C -0.03 -1.35 4.57 84.86 0.39 -0.96 16 7 N -0.91 -48.59 11.82 21.65 0.26 -48.33 16 8 Si 0.94 40.72 29.64 68.60 2.03 42.76 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 12 C 0.17 7.19 2.17 44.99 0.10 7.29 16 13 H 0.07 3.42 5.76 -2.39 -0.01 3.41 16 14 C -0.14 -5.34 9.04 71.98 0.65 -4.69 16 15 C 0.12 4.45 4.48 86.38 0.39 4.84 16 16 N -0.70 -24.69 4.81 -472.22 -2.27 -26.96 16 17 C 0.53 17.68 6.91 85.05 0.59 18.27 16 18 O -0.59 -21.79 11.54 -4.62 -0.05 -21.85 16 19 C -0.27 -7.16 9.84 22.47 0.22 -6.94 16 20 C 0.03 0.77 9.95 22.51 0.22 0.99 16 21 C -0.01 -0.27 5.51 39.08 0.22 -0.05 16 22 C -0.17 -4.21 10.86 22.66 0.25 -3.97 16 23 C -0.23 -5.65 10.81 22.01 0.24 -5.41 16 24 C 0.00 0.03 11.90 83.45 0.99 1.03 16 25 N -0.50 -14.12 3.94 -187.33 -0.74 -14.85 16 26 H 0.41 12.01 6.95 -92.71 -0.64 11.36 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.48 6.05 -2.39 -0.01 1.46 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.81 6.06 -2.39 -0.01 1.79 16 31 H 0.03 1.16 8.11 -2.39 -0.02 1.14 16 32 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 33 H 0.05 1.77 6.41 -2.39 -0.02 1.76 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.79 7.15 -2.39 -0.02 1.77 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.41 15.26 7.42 -92.71 -0.69 14.57 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 41 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.18 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -59.10 346.91 3.77 -55.32 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -0.31 Total: 41.55 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.21 Total: -0.35 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.10 Total: -117.43 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.76 kcal Total: -59.10 3.77 -55.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152984788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.878 kcal (2) G-P(sol) polarization free energy of solvation -59.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds