Wall clock time and date at job start Tue Mar 31 2020 07:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99905 * 2 1 4 4 C 1.53006 * 109.47081 * 269.99653 * 3 2 1 5 5 C 1.52998 * 109.47040 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47070 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99824 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00075 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99647 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.46893 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47224 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99716 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00215 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00033 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47035 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47030 * 120.00566 * 15 13 11 18 18 H 1.48504 * 109.46795 * 240.00415 * 15 13 11 19 19 C 1.39001 * 120.00337 * 180.02562 * 2 1 3 20 20 C 1.39146 * 119.70404 * 4.99589 * 19 2 1 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 2 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 H 1.08999 * 109.47074 * 269.99803 * 1 2 3 26 26 H 1.09004 * 109.46791 * 30.00125 * 1 2 3 27 27 H 1.09002 * 109.46677 * 149.99766 * 1 2 3 28 28 H 1.08998 * 109.47186 * 29.99840 * 3 2 1 29 29 H 1.09005 * 109.47025 * 150.00364 * 3 2 1 30 30 H 1.08989 * 109.47510 * 300.00183 * 4 3 2 31 31 H 1.09005 * 109.46611 * 60.00457 * 4 3 2 32 32 H 1.08998 * 109.47375 * 300.00278 * 5 4 3 33 33 H 1.09000 * 109.47235 * 60.00578 * 5 4 3 34 34 H 0.96996 * 119.99722 * 359.97438 * 6 5 4 35 35 H 1.08998 * 109.47091 * 299.99653 * 9 7 6 36 36 H 1.09005 * 109.46930 * 60.00061 * 9 7 6 37 37 H 1.08998 * 109.47375 * 299.99977 * 10 9 7 38 38 H 1.09000 * 109.47235 * 60.00277 * 10 9 7 39 39 H 0.97004 * 119.99753 * 179.97438 * 14 13 11 40 40 H 1.08000 * 120.44862 * 359.97438 * 20 19 2 41 41 H 1.08000 * 120.74269 * 180.02562 * 21 20 19 42 42 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 43 43 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2170 3.0357 -1.4426 6 7 3.4607 3.4589 -2.8238 7 6 4.1231 4.6066 -3.0700 8 8 4.5170 5.2891 -2.1482 9 6 4.3743 5.0415 -4.4909 10 6 5.1386 6.3669 -4.4909 11 6 5.3903 6.8017 -5.9117 12 1 5.0398 6.1936 -6.7326 13 6 6.0672 7.9761 -6.1636 14 7 6.4935 8.7168 -5.1640 15 14 6.3786 8.5153 -7.9249 16 1 5.8028 7.5140 -8.8582 17 1 5.7401 9.8355 -8.1586 18 1 7.8412 8.6246 -8.1577 19 6 2.1601 -1.2037 -0.0005 20 6 1.4622 -2.4029 -0.1063 21 6 2.1664 -3.5931 -0.1061 22 6 3.5503 -3.5445 0.0008 23 6 4.1775 -2.3197 0.1088 24 7 3.4802 -1.1992 0.1005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5138 29 1 3.1500 1.1384 0.5138 30 1 3.0416 0.9509 -1.9564 31 1 1.5001 1.8408 -1.9564 32 1 2.6275 3.7952 -0.9289 33 1 4.1694 2.9059 -0.9286 34 1 3.1459 2.9128 -3.5610 35 1 4.9635 4.2820 -5.0046 36 1 3.4218 5.1718 -5.0047 37 1 4.5491 7.1263 -3.9772 38 1 6.0910 6.2372 -3.9769 39 1 6.9701 9.5429 -5.3413 40 1 0.3852 -2.4040 -0.1875 41 1 1.6518 -4.5391 -0.1873 42 1 4.1294 -4.4561 0.0044 43 1 5.2529 -2.2776 0.1970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153120049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:12 Heat of formation + Delta-G solvation = -5.257618 kcal Electronic energy + Delta-G solvation = -21793.108649 eV Core-core repulsion = 18452.017452 eV Total energy + Delta-G solvation = -3341.091197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52500 -39.09657 -37.33776 -35.02572 -33.40687 -32.75425 -32.01740 -30.86753 -30.08412 -27.52832 -25.91328 -24.79180 -23.45350 -22.42001 -21.34077 -21.21914 -19.47271 -17.97123 -16.85716 -16.80819 -16.08697 -15.73488 -15.60238 -15.43936 -15.18278 -14.92038 -14.43636 -14.31732 -14.20459 -13.62072 -13.33006 -13.00020 -12.75395 -12.61888 -12.48307 -12.12131 -12.00791 -11.83037 -11.65134 -11.11780 -10.97720 -10.90372 -10.55971 -10.39745 -9.99845 -9.92248 -9.62915 -9.62130 -9.13409 -8.96593 -8.71394 -8.29501 -7.86870 -5.93509 -3.97706 1.01471 1.18589 2.57406 3.32503 3.34348 3.41013 3.44486 3.60785 3.70301 4.21095 4.49814 4.51662 4.66824 4.78464 4.81590 4.91234 4.95631 4.97342 5.04943 5.15901 5.27433 5.29468 5.41349 5.48551 5.48860 5.59557 5.71593 5.79901 5.97042 6.02779 6.10173 6.27584 6.29428 6.31406 6.62280 6.79604 6.94078 7.06453 7.77867 7.90286 7.90757 7.95454 8.10623 8.42085 8.84730 9.11382 9.65662 11.17499 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.002156 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.342072 B =12984.224590 C =13310.407112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.612 5.612 3 C 0.131 3.869 4 C -0.143 4.143 5 C 0.123 3.877 6 N -0.745 5.745 7 C 0.509 3.491 8 O -0.536 6.536 9 C -0.130 4.130 10 C 0.036 3.964 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.403 3.597 20 C -0.244 4.244 21 C -0.035 4.035 22 C -0.239 4.239 23 C 0.150 3.850 24 N -0.539 5.539 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.501 -26.286 11.455 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.325 5.325 3 C 0.007 3.993 4 C -0.182 4.182 5 C -0.002 4.002 6 N -0.399 5.399 7 C 0.297 3.703 8 O -0.411 6.411 9 C -0.170 4.170 10 C -0.001 4.001 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.169 3.831 20 C -0.268 4.268 21 C -0.061 4.061 22 C -0.262 4.262 23 C -0.008 4.008 24 N -0.256 5.256 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.803 -24.632 12.259 30.347 hybrid contribution -0.436 -0.798 -1.405 1.674 sum -13.239 -25.430 10.854 30.656 Atomic orbital electron populations 1.21726 0.78575 1.03117 1.01562 1.46361 1.04951 1.02830 1.78332 1.21310 0.98116 0.83780 0.96069 1.22150 1.00712 0.97093 0.98288 1.21109 0.99917 0.94626 0.84515 1.46192 1.60544 1.25348 1.07797 1.21548 0.76063 0.79387 0.93298 1.90664 1.49951 1.53506 1.46975 1.21860 1.02438 1.02524 0.90189 1.18904 0.95452 0.89031 0.96750 1.21270 1.36326 1.06540 0.92266 0.92569 1.25037 0.95802 0.96652 0.97002 1.70015 1.38290 1.14042 1.30501 0.86533 0.77897 0.78513 0.84994 1.19771 1.21036 1.21023 1.18376 0.88540 0.85874 0.90321 1.21436 1.01005 0.92001 1.12406 1.21301 0.94123 0.97696 0.92970 1.21823 0.95328 0.99388 1.09658 1.22455 0.99672 0.86916 0.91745 1.67203 1.06185 1.31908 1.20312 0.92895 0.90794 0.91174 0.90679 0.89049 0.91064 0.91622 0.91931 0.91643 0.77053 0.90298 0.90329 0.95826 0.95808 0.93027 0.85160 0.85241 0.85296 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 10.28 59.85 0.62 1.14 16 2 N -0.61 -5.29 2.99 -181.71 -0.54 -5.84 16 3 C 0.13 1.18 5.47 -4.04 -0.02 1.16 16 4 C -0.14 -1.38 5.65 -26.73 -0.15 -1.54 16 5 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 6 N -0.74 -10.92 5.56 -60.29 -0.33 -11.26 16 7 C 0.51 10.16 7.83 -10.98 -0.09 10.08 16 8 O -0.54 -13.08 15.98 5.56 0.09 -13.00 16 9 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 10 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 11 C -0.53 -15.18 9.11 -34.44 -0.31 -15.50 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.82 13.29 55.43 0.74 -27.09 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 C 0.40 4.03 7.37 -155.02 -1.14 2.88 16 20 C -0.24 -1.97 9.27 -39.22 -0.36 -2.33 16 21 C -0.03 -0.25 10.17 -39.32 -0.40 -0.65 16 22 C -0.24 -1.78 10.10 -39.42 -0.40 -2.18 16 23 C 0.15 1.34 11.17 -17.57 -0.20 1.15 16 24 N -0.54 -5.97 9.08 -12.44 -0.11 -6.08 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 27 H 0.07 0.32 5.98 -51.93 -0.31 0.01 16 28 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 29 H 0.09 0.96 7.30 -51.93 -0.38 0.58 16 30 H 0.07 0.78 8.14 -51.94 -0.42 0.35 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 4.65 8.47 -40.82 -0.35 4.31 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.13 0.78 6.03 -52.49 -0.32 0.46 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -36.40 362.55 -9.38 -45.78 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.80 Total: -0.24 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.85 Total: -4.66 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.25 Total: -50.26 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.40 -9.38 -45.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153120049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.521 kcal (2) G-P(sol) polarization free energy of solvation -36.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds