Wall clock time and date at job start Tue Mar 31 2020 07:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99905 * 2 1 4 4 C 1.53006 * 109.47081 * 269.99653 * 3 2 1 5 5 C 1.52998 * 109.47040 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47070 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99824 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00075 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99647 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.46893 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47224 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99716 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00215 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00033 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47035 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47030 * 120.00566 * 15 13 11 18 18 H 1.48504 * 109.46795 * 240.00415 * 15 13 11 19 19 C 1.39001 * 120.00337 * 180.02562 * 2 1 3 20 20 C 1.39146 * 119.70404 * 4.99589 * 19 2 1 21 21 C 1.38295 * 119.09401 * 179.97438 * 20 19 2 22 22 C 1.38884 * 118.51011 * 0.02562 * 21 20 19 23 23 C 1.38022 * 119.32992 * 0.27628 * 22 21 20 24 24 N 1.31980 * 120.85123 * 359.44533 * 23 22 21 25 25 H 1.08999 * 109.47074 * 269.99803 * 1 2 3 26 26 H 1.09004 * 109.46791 * 30.00125 * 1 2 3 27 27 H 1.09002 * 109.46677 * 149.99766 * 1 2 3 28 28 H 1.08998 * 109.47186 * 29.99840 * 3 2 1 29 29 H 1.09005 * 109.47025 * 150.00364 * 3 2 1 30 30 H 1.08989 * 109.47510 * 300.00183 * 4 3 2 31 31 H 1.09005 * 109.46611 * 60.00457 * 4 3 2 32 32 H 1.08998 * 109.47375 * 300.00278 * 5 4 3 33 33 H 1.09000 * 109.47235 * 60.00578 * 5 4 3 34 34 H 0.96996 * 119.99722 * 359.97438 * 6 5 4 35 35 H 1.08998 * 109.47091 * 299.99653 * 9 7 6 36 36 H 1.09005 * 109.46930 * 60.00061 * 9 7 6 37 37 H 1.08998 * 109.47375 * 299.99977 * 10 9 7 38 38 H 1.09000 * 109.47235 * 60.00277 * 10 9 7 39 39 H 0.97004 * 119.99753 * 179.97438 * 14 13 11 40 40 H 1.08000 * 120.44862 * 359.97438 * 20 19 2 41 41 H 1.08000 * 120.74269 * 180.02562 * 21 20 19 42 42 H 1.08002 * 120.33299 * 179.97438 * 22 21 20 43 43 H 1.07989 * 119.57332 * 179.70393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2170 3.0357 -1.4426 6 7 3.4607 3.4589 -2.8238 7 6 4.1231 4.6066 -3.0700 8 8 4.5170 5.2891 -2.1482 9 6 4.3743 5.0415 -4.4909 10 6 5.1386 6.3669 -4.4909 11 6 5.3903 6.8017 -5.9117 12 1 5.0398 6.1936 -6.7326 13 6 6.0672 7.9761 -6.1636 14 7 6.4935 8.7168 -5.1640 15 14 6.3786 8.5153 -7.9249 16 1 5.8028 7.5140 -8.8582 17 1 5.7401 9.8355 -8.1586 18 1 7.8412 8.6246 -8.1577 19 6 2.1601 -1.2037 -0.0005 20 6 1.4622 -2.4029 -0.1063 21 6 2.1664 -3.5931 -0.1061 22 6 3.5503 -3.5445 0.0008 23 6 4.1775 -2.3197 0.1088 24 7 3.4802 -1.1992 0.1005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5138 29 1 3.1500 1.1384 0.5138 30 1 3.0416 0.9509 -1.9564 31 1 1.5001 1.8408 -1.9564 32 1 2.6275 3.7952 -0.9289 33 1 4.1694 2.9059 -0.9286 34 1 3.1459 2.9128 -3.5610 35 1 4.9635 4.2820 -5.0046 36 1 3.4218 5.1718 -5.0047 37 1 4.5491 7.1263 -3.9772 38 1 6.0910 6.2372 -3.9769 39 1 6.9701 9.5429 -5.3413 40 1 0.3852 -2.4040 -0.1875 41 1 1.6518 -4.5391 -0.1873 42 1 4.1294 -4.4561 0.0044 43 1 5.2529 -2.2776 0.1970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153120049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:11 Heat of formation + Delta-G solvation = -29.320052 kcal Electronic energy + Delta-G solvation = -21794.152074 eV Core-core repulsion = 18452.017452 eV Total energy + Delta-G solvation = -3342.134622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13647 -40.65928 -38.05948 -36.23722 -35.53690 -33.46537 -33.22020 -32.54905 -30.76548 -28.53001 -27.41683 -25.84160 -24.19537 -23.60369 -22.84589 -21.97807 -21.01875 -18.80714 -18.56555 -17.57376 -17.42754 -16.90235 -16.79235 -16.51729 -16.36154 -15.98498 -15.80071 -15.29719 -15.06295 -14.61529 -14.28245 -14.20995 -14.11899 -13.83742 -13.35792 -13.21813 -13.16472 -13.00198 -12.83481 -12.57371 -12.46784 -12.42656 -11.93111 -11.79625 -11.63986 -11.28796 -11.01657 -10.74061 -10.59103 -10.58227 -10.25085 -10.07346 -8.47089 -8.18186 -6.32381 0.41923 0.60072 1.41983 1.43745 1.57058 1.71552 1.95564 2.32194 2.46135 3.05706 3.14640 3.62382 3.88241 3.96834 4.08755 4.09255 4.21709 4.26397 4.35157 4.41354 4.45852 4.51745 4.55701 4.57134 4.61553 4.69514 4.84049 4.88027 4.97766 5.05785 5.08155 5.18155 5.22377 5.45804 5.47084 5.52617 5.63013 5.76186 5.85480 6.06264 6.17516 6.43913 6.61057 6.86343 7.29511 7.34656 7.38109 8.94767 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.002156 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.342072 B =12984.224590 C =13310.407112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.617 5.617 3 C 0.134 3.866 4 C -0.122 4.122 5 C 0.124 3.876 6 N -0.719 5.719 7 C 0.509 3.491 8 O -0.590 6.590 9 C -0.119 4.119 10 C 0.041 3.959 11 C -0.542 4.542 12 H 0.076 0.924 13 C -0.009 4.009 14 N -0.938 5.938 15 Si 0.976 3.024 16 H -0.253 1.253 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.379 3.621 20 C -0.247 4.247 21 C -0.039 4.039 22 C -0.239 4.239 23 C 0.127 3.873 24 N -0.573 5.573 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.415 0.585 35 H 0.103 0.897 36 H 0.106 0.894 37 H -0.017 1.017 38 H -0.019 1.019 39 H 0.263 0.737 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 -28.609 9.657 33.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.330 5.330 3 C 0.010 3.990 4 C -0.161 4.161 5 C -0.001 4.001 6 N -0.373 5.373 7 C 0.298 3.702 8 O -0.471 6.471 9 C -0.159 4.159 10 C 0.003 3.997 11 C -0.580 4.580 12 H 0.094 0.906 13 C -0.207 4.207 14 N -0.578 5.578 15 Si 0.800 3.200 16 H -0.176 1.176 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.145 3.855 20 C -0.272 4.272 21 C -0.064 4.064 22 C -0.261 4.261 23 C -0.030 4.030 24 N -0.291 5.291 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.252 0.748 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.001 0.999 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.168 0.832 41 H 0.176 0.824 42 H 0.169 0.831 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.719 -27.038 10.443 32.507 hybrid contribution 0.134 -0.159 -0.768 0.796 sum -14.584 -27.197 9.675 32.341 Atomic orbital electron populations 1.21906 0.76779 1.04239 1.02340 1.46477 1.05961 1.02108 1.78441 1.21178 0.97778 0.84727 0.95348 1.21960 1.00637 0.94532 0.98997 1.21207 0.99635 0.96282 0.82944 1.45914 1.58300 1.23523 1.09533 1.21354 0.76219 0.80346 0.92297 1.90651 1.52606 1.55622 1.48172 1.21639 1.03132 0.99545 0.91600 1.18702 0.93665 0.91661 0.95659 1.21748 1.36157 1.06996 0.93090 0.90563 1.26174 0.95373 0.96780 1.02343 1.70194 1.39301 1.14711 1.33612 0.85242 0.77810 0.78350 0.78635 1.17589 1.20555 1.20640 1.18727 0.88584 0.86973 0.91196 1.21718 1.02093 0.91611 1.11761 1.21716 0.94143 0.98666 0.91905 1.22115 0.95934 0.99582 1.08479 1.22781 1.00413 0.87319 0.92443 1.67166 1.07225 1.33181 1.21547 0.92276 0.89780 0.89936 0.89266 0.91132 0.92086 0.89825 0.92043 0.93290 0.74817 0.87899 0.87617 0.99866 1.00056 0.92851 0.83165 0.82376 0.83097 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.28 127.77 1.31 2.11 16 2 N -0.62 -9.90 2.99 -728.80 -2.18 -12.08 16 3 C 0.13 2.34 5.47 86.38 0.47 2.81 16 4 C -0.12 -2.20 5.65 30.60 0.17 -2.03 16 5 C 0.12 3.11 5.67 86.38 0.49 3.60 16 6 N -0.72 -20.27 5.56 -463.06 -2.57 -22.84 16 7 C 0.51 20.46 7.83 87.66 0.69 21.15 16 8 O -0.59 -30.09 15.98 -3.02 -0.05 -30.13 16 9 C -0.12 -4.93 5.64 29.85 0.17 -4.76 16 10 C 0.04 2.33 4.26 29.85 0.13 2.45 16 11 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 12 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 13 C -0.01 -0.56 5.46 84.65 0.46 -0.10 16 14 N -0.94 -60.41 13.29 21.45 0.28 -60.12 16 15 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 16 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 C 0.38 7.26 7.37 133.07 0.98 8.24 16 20 C -0.25 -3.53 9.27 22.50 0.21 -3.32 16 21 C -0.04 -0.46 10.17 22.44 0.23 -0.24 16 22 C -0.24 -3.19 10.10 22.37 0.23 -2.96 16 23 C 0.13 2.25 11.17 84.62 0.95 3.20 16 24 N -0.57 -12.75 9.08 -193.26 -1.75 -14.50 16 25 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.08 0.58 8.07 -2.38 -0.02 0.56 16 27 H 0.08 0.52 5.98 -2.39 -0.01 0.51 16 28 H 0.09 1.28 8.07 -2.39 -0.02 1.26 16 29 H 0.07 1.53 7.30 -2.38 -0.02 1.52 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.23 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 8.69 8.47 -92.71 -0.79 7.90 16 35 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.11 3.79 8.14 -2.38 -0.02 3.77 16 37 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 38 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 39 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.15 1.39 6.03 -2.91 -0.02 1.38 16 41 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.16 2.26 8.06 -2.92 -0.02 2.23 16 Total: -1.00 -82.78 362.55 2.68 -80.10 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.21 Total: 13.67 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 6.72 Total: -0.99 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -6.22 Total: -109.54 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -82.78 2.68 -80.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153120049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.780 kcal (2) G-P(sol) polarization free energy of solvation -82.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds