Wall clock time and date at job start Tue Mar 31 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47308 * 2 1 4 4 C 1.36943 * 120.00267 * 275.74631 * 3 2 1 5 5 H 1.08001 * 119.99250 * 35.56686 * 4 3 2 6 6 C 1.38810 * 120.00148 * 215.56824 * 4 3 2 7 7 N 1.31619 * 119.99878 * 13.41672 * 6 4 3 8 8 Si 1.86795 * 119.99939 * 193.41093 * 6 4 3 9 9 H 1.48508 * 109.46978 * 90.00503 * 8 6 4 10 10 H 1.48502 * 109.47264 * 209.99940 * 8 6 4 11 11 H 1.48497 * 109.47290 * 330.00572 * 8 6 4 12 12 C 1.46498 * 120.00170 * 95.74342 * 3 2 1 13 13 H 1.09000 * 109.47661 * 181.75277 * 12 3 2 14 14 C 1.53002 * 109.46987 * 61.75400 * 12 3 2 15 15 C 1.53004 * 109.47125 * 301.75580 * 12 3 2 16 16 N 1.46498 * 109.46825 * 304.99687 * 15 12 3 17 17 C 1.34779 * 119.99661 * 179.97438 * 16 15 12 18 18 O 1.21512 * 120.00116 * 0.02562 * 17 16 15 19 19 C 1.48150 * 119.99919 * 180.02562 * 17 16 15 20 20 C 1.39837 * 120.92089 * 355.76697 * 19 17 16 21 21 C 1.38129 * 119.00314 * 179.97438 * 20 19 17 22 22 N 1.31834 * 120.89490 * 0.02562 * 21 20 19 23 23 C 1.31796 * 122.05225 * 359.97438 * 22 21 20 24 24 C 1.38179 * 120.89031 * 0.02562 * 23 22 21 25 25 C 1.50696 * 120.49383 * 180.02562 * 24 23 22 26 26 H 1.08999 * 109.46829 * 60.00125 * 1 2 3 27 27 H 1.09000 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47215 * 300.00054 * 1 2 3 29 29 H 1.08999 * 109.46823 * 239.99603 * 2 1 3 30 30 H 1.08995 * 109.47185 * 120.00241 * 2 1 3 31 31 H 0.97002 * 120.00077 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46718 * 180.02562 * 14 12 3 33 33 H 1.09001 * 109.46702 * 299.99848 * 14 12 3 34 34 H 1.09002 * 109.46994 * 60.00246 * 14 12 3 35 35 H 1.08997 * 109.47075 * 184.99758 * 15 12 3 36 36 H 1.08995 * 109.47371 * 64.99713 * 15 12 3 37 37 H 0.97000 * 120.00392 * 359.97438 * 16 15 12 38 38 H 1.07993 * 120.49979 * 0.02562 * 20 19 17 39 39 H 1.07995 * 119.55521 * 180.02562 * 21 20 19 40 40 H 1.07989 * 119.55285 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47325 * 263.00165 * 25 24 23 42 42 H 1.09006 * 109.47549 * 23.00935 * 25 24 23 43 43 H 1.09006 * 109.47154 * 143.00335 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1347 2.0663 -1.1800 5 1 1.4146 1.9084 -1.9692 6 6 3.1780 2.9637 -1.3615 7 7 4.1952 2.9680 -0.5263 8 14 3.1385 4.1651 -2.7914 9 1 2.4641 5.4181 -2.3666 10 1 4.5272 4.4711 -3.2194 11 1 2.3928 3.5613 -3.9248 12 6 2.3823 2.0294 1.2623 13 1 2.6912 3.0565 1.0676 14 6 3.5361 1.2648 1.9142 15 6 1.1750 2.0294 2.2022 16 7 0.0338 2.6567 1.5312 17 6 -1.1468 2.7681 2.1719 18 8 -1.2643 2.3487 3.3063 19 6 -2.3010 3.4019 1.4931 20 6 -2.1644 3.9696 0.2225 21 6 -3.2670 4.5497 -0.3740 22 7 -4.4342 4.5727 0.2385 23 6 -4.6063 4.0495 1.4358 24 6 -3.5570 3.4491 2.1051 25 6 -3.7639 2.8531 3.4737 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.9245 3.5949 -0.6533 32 1 3.8066 1.7470 2.8537 33 1 3.2272 0.2378 2.1090 34 1 4.3962 1.2649 1.2446 35 1 1.4178 2.5890 3.1056 36 1 0.9212 1.0033 2.4678 37 1 0.1277 2.9919 0.6258 38 1 -1.2114 3.9539 -0.2852 39 1 -3.1716 4.9903 -1.3553 40 1 -5.5802 4.0913 1.9004 41 1 -3.4530 3.5705 4.2331 42 1 -4.8186 2.6136 3.6101 43 1 -3.1699 1.9440 3.5677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153248265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:32 Heat of formation + Delta-G solvation = 16.318931 kcal Electronic energy + Delta-G solvation = -24320.469031 eV Core-core repulsion = 20980.313464 eV Total energy + Delta-G solvation = -3340.155568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60789 -38.85693 -36.97284 -34.04769 -33.29015 -32.22172 -31.87012 -30.88591 -28.23711 -27.47296 -25.77533 -24.10206 -23.93917 -22.20788 -21.67467 -20.32484 -19.33962 -17.81516 -16.92539 -16.61794 -15.36918 -15.28445 -15.18072 -15.02966 -14.60463 -14.41522 -13.74950 -13.63381 -13.39012 -13.12123 -12.75922 -12.65568 -12.43951 -12.26764 -12.12827 -11.88680 -11.56021 -11.49452 -11.09917 -10.98566 -10.88155 -10.70576 -10.35512 -10.15759 -10.00830 -9.77823 -9.68382 -9.49223 -9.18256 -8.95826 -8.59087 -8.48292 -6.69331 -5.94079 -3.47219 0.79515 1.06706 3.12617 3.25642 3.34995 3.35780 3.52639 3.88785 4.35567 4.38549 4.72145 4.84650 4.85840 5.01777 5.21986 5.33035 5.41270 5.64807 5.66558 5.79334 5.82576 5.88205 6.00240 6.07492 6.11961 6.20031 6.32809 6.37270 6.44413 6.51452 6.58118 6.62448 6.64478 6.79437 6.86677 6.95860 7.11474 7.42456 7.55083 7.71928 7.87097 7.98790 8.38547 8.54577 9.10927 9.70457 10.28863 11.12336 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.005691 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.453399 B = 4919.153371 C = 5954.822063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.266 4.266 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.178 3.822 13 H 0.098 0.902 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.690 5.690 17 C 0.547 3.453 18 O -0.544 6.544 19 C -0.088 4.088 20 C -0.132 4.132 21 C 0.084 3.916 22 N -0.471 5.471 23 C 0.086 3.914 24 C -0.081 4.081 25 C -0.114 4.114 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.255 0.745 32 H 0.031 0.969 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.411 0.589 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 0.679 4.024 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.396 4.396 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.071 3.929 13 H 0.116 0.884 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.341 5.341 17 C 0.333 3.667 18 O -0.424 6.424 19 C -0.099 4.099 20 C -0.152 4.152 21 C -0.072 4.072 22 N -0.180 5.180 23 C -0.072 4.072 24 C -0.084 4.084 25 C -0.171 4.171 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.249 0.751 38 H 0.163 0.837 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.442 0.855 4.372 12.279 hybrid contribution 0.906 0.441 -0.901 1.352 sum -10.536 1.296 3.471 11.168 Atomic orbital electron populations 1.22470 1.00101 0.99079 1.01456 1.20753 0.91569 0.87463 0.98760 1.43862 1.76129 1.08216 1.02239 1.19087 1.06653 1.20005 0.93860 0.91905 1.25249 0.94596 1.01177 0.97581 1.69962 1.08055 1.37203 1.38115 0.86384 0.77053 0.81347 0.82503 1.21309 1.21683 1.20329 1.20479 0.88748 0.99538 0.84154 0.88435 1.22039 1.01166 0.97795 0.99332 1.22247 0.87296 0.96703 0.96189 1.45949 1.10049 1.58882 1.19190 1.18150 0.82908 0.79759 0.85907 1.90677 1.83402 1.50137 1.18141 1.20391 0.94664 0.99749 0.95101 1.22513 1.01300 0.96844 0.94557 1.22701 0.87606 0.96970 0.99923 1.67518 1.25481 1.15440 1.09518 1.22669 0.98661 0.94940 0.90891 1.21100 0.92584 0.96663 0.98059 1.20960 1.01679 1.02936 0.91534 0.93505 0.94830 0.93024 0.94055 0.94530 0.93467 0.94947 0.95261 0.89929 0.92641 0.92523 0.75136 0.83747 0.82221 0.82476 0.90623 0.92245 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.83 37.16 0.37 -2.66 16 2 C 0.14 2.77 5.62 -4.04 -0.02 2.75 16 3 N -0.58 -12.61 1.82 -165.66 -0.30 -12.91 16 4 C -0.27 -6.37 9.35 -15.06 -0.14 -6.51 16 5 H 0.06 1.51 7.86 -52.49 -0.41 1.10 16 6 C 0.01 0.36 4.93 -17.43 -0.09 0.27 16 7 N -0.89 -22.97 10.31 55.49 0.57 -22.39 16 8 Si 0.90 19.72 29.57 -169.99 -5.03 14.69 16 9 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.18 3.68 1.90 -67.93 -0.13 3.55 16 13 H 0.10 2.29 6.18 -51.93 -0.32 1.97 16 14 C -0.14 -2.87 9.04 37.16 0.34 -2.53 16 15 C 0.10 1.85 4.33 -4.04 -0.02 1.84 16 16 N -0.69 -12.03 3.80 -61.15 -0.23 -12.26 16 17 C 0.55 9.37 7.41 -12.19 -0.09 9.28 16 18 O -0.54 -10.26 13.51 5.36 0.07 -10.19 16 19 C -0.09 -1.33 5.91 -104.65 -0.62 -1.94 16 20 C -0.13 -1.80 9.61 -39.02 -0.38 -2.18 16 21 C 0.08 1.07 11.17 -17.59 -0.20 0.87 16 22 N -0.47 -6.35 10.33 -13.31 -0.14 -6.48 16 23 C 0.09 1.06 10.83 -17.59 -0.19 0.87 16 24 C -0.08 -1.10 5.93 -104.06 -0.62 -1.72 16 25 C -0.11 -1.40 8.84 36.00 0.32 -1.08 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.93 4.82 -51.93 -0.25 0.68 16 29 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.04 0.69 6.53 -51.93 -0.34 0.36 16 31 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.54 6.74 -51.93 -0.35 0.19 16 34 H 0.08 1.89 7.14 -51.93 -0.37 1.52 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.07 7.10 -51.93 -0.37 0.70 16 37 H 0.41 7.26 6.15 -40.82 -0.25 7.01 16 38 H 0.14 1.90 6.56 -52.49 -0.34 1.56 16 39 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 43 H 0.10 1.41 5.94 -51.93 -0.31 1.10 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -26.81 341.68 -7.62 -34.43 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.25 Total: 9.18 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.46 Total: 0.79 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.10 Total: -54.05 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.81 -7.62 -34.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153248265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.748 kcal (2) G-P(sol) polarization free energy of solvation -26.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds