Wall clock time and date at job start Tue Mar 31 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47308 * 2 1 4 4 C 1.36943 * 120.00267 * 275.74631 * 3 2 1 5 5 H 1.08001 * 119.99250 * 35.56686 * 4 3 2 6 6 C 1.38810 * 120.00148 * 215.56824 * 4 3 2 7 7 N 1.31619 * 119.99878 * 13.41672 * 6 4 3 8 8 Si 1.86795 * 119.99939 * 193.41093 * 6 4 3 9 9 H 1.48508 * 109.46978 * 90.00503 * 8 6 4 10 10 H 1.48502 * 109.47264 * 209.99940 * 8 6 4 11 11 H 1.48497 * 109.47290 * 330.00572 * 8 6 4 12 12 C 1.46498 * 120.00170 * 95.74342 * 3 2 1 13 13 H 1.09000 * 109.47661 * 181.75277 * 12 3 2 14 14 C 1.53002 * 109.46987 * 61.75400 * 12 3 2 15 15 C 1.53004 * 109.47125 * 301.75580 * 12 3 2 16 16 N 1.46498 * 109.46825 * 304.99687 * 15 12 3 17 17 C 1.34779 * 119.99661 * 179.97438 * 16 15 12 18 18 O 1.21512 * 120.00116 * 0.02562 * 17 16 15 19 19 C 1.48150 * 119.99919 * 180.02562 * 17 16 15 20 20 C 1.39837 * 120.92089 * 355.76697 * 19 17 16 21 21 C 1.38129 * 119.00314 * 179.97438 * 20 19 17 22 22 N 1.31834 * 120.89490 * 0.02562 * 21 20 19 23 23 C 1.31796 * 122.05225 * 359.97438 * 22 21 20 24 24 C 1.38179 * 120.89031 * 0.02562 * 23 22 21 25 25 C 1.50696 * 120.49383 * 180.02562 * 24 23 22 26 26 H 1.08999 * 109.46829 * 60.00125 * 1 2 3 27 27 H 1.09000 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47215 * 300.00054 * 1 2 3 29 29 H 1.08999 * 109.46823 * 239.99603 * 2 1 3 30 30 H 1.08995 * 109.47185 * 120.00241 * 2 1 3 31 31 H 0.97002 * 120.00077 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46718 * 180.02562 * 14 12 3 33 33 H 1.09001 * 109.46702 * 299.99848 * 14 12 3 34 34 H 1.09002 * 109.46994 * 60.00246 * 14 12 3 35 35 H 1.08997 * 109.47075 * 184.99758 * 15 12 3 36 36 H 1.08995 * 109.47371 * 64.99713 * 15 12 3 37 37 H 0.97000 * 120.00392 * 359.97438 * 16 15 12 38 38 H 1.07993 * 120.49979 * 0.02562 * 20 19 17 39 39 H 1.07995 * 119.55521 * 180.02562 * 21 20 19 40 40 H 1.07989 * 119.55285 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47325 * 263.00165 * 25 24 23 42 42 H 1.09006 * 109.47549 * 23.00935 * 25 24 23 43 43 H 1.09006 * 109.47154 * 143.00335 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1347 2.0663 -1.1800 5 1 1.4146 1.9084 -1.9692 6 6 3.1780 2.9637 -1.3615 7 7 4.1952 2.9680 -0.5263 8 14 3.1385 4.1651 -2.7914 9 1 2.4641 5.4181 -2.3666 10 1 4.5272 4.4711 -3.2194 11 1 2.3928 3.5613 -3.9248 12 6 2.3823 2.0294 1.2623 13 1 2.6912 3.0565 1.0676 14 6 3.5361 1.2648 1.9142 15 6 1.1750 2.0294 2.2022 16 7 0.0338 2.6567 1.5312 17 6 -1.1468 2.7681 2.1719 18 8 -1.2643 2.3487 3.3063 19 6 -2.3010 3.4019 1.4931 20 6 -2.1644 3.9696 0.2225 21 6 -3.2670 4.5497 -0.3740 22 7 -4.4342 4.5727 0.2385 23 6 -4.6063 4.0495 1.4358 24 6 -3.5570 3.4491 2.1051 25 6 -3.7639 2.8531 3.4737 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.9245 3.5949 -0.6533 32 1 3.8066 1.7470 2.8537 33 1 3.2272 0.2378 2.1090 34 1 4.3962 1.2649 1.2446 35 1 1.4178 2.5890 3.1056 36 1 0.9212 1.0033 2.4678 37 1 0.1277 2.9919 0.6258 38 1 -1.2114 3.9539 -0.2852 39 1 -3.1716 4.9903 -1.3553 40 1 -5.5802 4.0913 1.9004 41 1 -3.4530 3.5705 4.2331 42 1 -4.8186 2.6136 3.6101 43 1 -3.1699 1.9440 3.5677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153248265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:31 Heat of formation + Delta-G solvation = 2.393758 kcal Electronic energy + Delta-G solvation = -24321.072872 eV Core-core repulsion = 20980.313464 eV Total energy + Delta-G solvation = -3340.759408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74113 -40.14480 -38.57444 -35.49246 -34.36758 -33.77952 -33.32328 -32.32821 -29.92932 -28.54498 -27.13023 -25.79510 -25.21931 -23.50094 -23.01036 -21.60685 -21.00104 -19.15360 -18.54438 -17.78226 -16.90665 -16.59352 -16.46572 -16.21367 -16.08013 -15.87771 -15.25730 -14.94479 -14.52218 -14.34081 -14.30939 -13.97765 -13.78349 -13.58432 -13.49880 -13.30068 -13.16521 -12.77500 -12.70281 -12.56074 -12.50365 -12.35554 -12.05231 -11.88287 -11.35248 -11.21898 -11.17330 -10.89084 -10.44231 -10.34036 -10.01500 -9.84806 -8.48567 -7.81171 -5.35586 -0.31676 0.07812 1.50107 1.54945 1.60273 1.87831 2.20045 2.54623 2.82060 3.34279 3.47789 3.58580 3.67349 3.78932 3.84157 3.98771 4.23174 4.43796 4.45127 4.55279 4.64163 4.68128 4.75846 4.80844 4.81569 4.87412 4.88146 4.94765 4.96894 5.06493 5.11052 5.22458 5.31478 5.37339 5.52495 5.57584 5.64512 5.70142 5.76316 5.91337 6.51594 6.59942 6.88298 7.17015 7.26477 7.92365 8.45957 9.22490 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.005691 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.453399 B = 4919.153371 C = 5954.822063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.263 4.263 5 H 0.061 0.939 6 C -0.029 4.029 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.283 1.283 10 H -0.304 1.304 11 H -0.273 1.273 12 C 0.185 3.815 13 H 0.068 0.932 14 C -0.135 4.135 15 C 0.115 3.885 16 N -0.691 5.691 17 C 0.548 3.452 18 O -0.564 6.564 19 C -0.108 4.108 20 C -0.136 4.136 21 C 0.084 3.916 22 N -0.482 5.482 23 C 0.092 3.908 24 C -0.087 4.087 25 C -0.109 4.109 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.248 0.752 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.410 0.590 38 H 0.145 0.855 39 H 0.185 0.815 40 H 0.191 0.809 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.017 0.823 3.919 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.393 4.393 5 H 0.079 0.921 6 C -0.226 4.226 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.209 1.209 10 H -0.231 1.231 11 H -0.198 1.198 12 C 0.077 3.923 13 H 0.086 0.914 14 C -0.195 4.195 15 C -0.011 4.011 16 N -0.341 5.341 17 C 0.335 3.665 18 O -0.445 6.445 19 C -0.119 4.119 20 C -0.157 4.157 21 C -0.071 4.071 22 N -0.191 5.191 23 C -0.065 4.065 24 C -0.090 4.090 25 C -0.166 4.166 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.247 0.753 38 H 0.162 0.838 39 H 0.202 0.798 40 H 0.208 0.792 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.592 0.989 4.262 14.279 hybrid contribution 1.521 0.359 -0.852 1.780 sum -12.071 1.347 3.410 12.616 Atomic orbital electron populations 1.22282 0.98248 1.00223 1.00852 1.20815 0.92850 0.86315 0.98582 1.43970 1.76266 1.09029 1.02016 1.19241 1.06020 1.19673 0.94391 0.92105 1.25792 0.94582 1.02747 0.99515 1.70103 1.08503 1.37756 1.39493 0.85522 0.76082 0.79833 0.80431 1.20921 1.23069 1.19786 1.20320 0.89780 0.97882 0.84289 0.91366 1.21900 0.99698 0.98629 0.99225 1.21957 0.86764 0.96777 0.95557 1.45898 1.10081 1.59044 1.19083 1.18461 0.83144 0.79241 0.85655 1.90669 1.83776 1.51036 1.19029 1.20354 0.94534 1.01042 0.95953 1.22555 1.01805 0.97099 0.94211 1.23091 0.87013 0.96275 1.00736 1.67616 1.25666 1.15724 1.10051 1.23168 0.99549 0.93476 0.90344 1.21318 0.92283 0.96794 0.98600 1.20906 1.03278 1.01561 0.90837 0.94136 0.92792 0.93489 0.95081 0.93828 0.94249 0.93326 0.94088 0.93023 0.92433 0.92632 0.75289 0.83776 0.79787 0.79203 0.90821 0.89073 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 9.83 71.98 0.71 -4.60 16 2 C 0.14 5.39 5.62 86.38 0.49 5.88 16 3 N -0.59 -25.51 1.82 -678.04 -1.23 -26.75 16 4 C -0.26 -12.56 9.35 84.03 0.79 -11.78 16 5 H 0.06 2.90 7.86 -2.91 -0.02 2.88 16 6 C -0.03 -1.42 4.93 84.86 0.42 -1.00 16 7 N -0.91 -48.05 10.31 21.65 0.22 -47.83 16 8 Si 0.95 40.73 29.57 68.60 2.03 42.76 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 12 C 0.18 7.64 1.90 44.99 0.09 7.73 16 13 H 0.07 3.27 6.18 -2.39 -0.01 3.26 16 14 C -0.14 -5.39 9.04 71.98 0.65 -4.74 16 15 C 0.11 4.19 4.33 86.38 0.37 4.57 16 16 N -0.69 -23.91 3.80 -465.69 -1.77 -25.68 16 17 C 0.55 18.52 7.41 86.88 0.64 19.16 16 18 O -0.56 -21.11 13.51 -3.75 -0.05 -21.16 16 19 C -0.11 -3.14 5.91 -19.88 -0.12 -3.26 16 20 C -0.14 -3.56 9.61 22.63 0.22 -3.35 16 21 C 0.08 1.97 11.17 84.67 0.95 2.91 16 22 N -0.48 -11.71 10.33 -196.01 -2.03 -13.73 16 23 C 0.09 2.01 10.83 84.68 0.92 2.92 16 24 C -0.09 -2.19 5.93 -19.50 -0.12 -2.31 16 25 C -0.11 -2.48 8.84 71.23 0.63 -1.85 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.64 4.82 -2.39 -0.01 1.62 16 29 H 0.03 1.25 8.09 -2.39 -0.02 1.23 16 30 H 0.04 1.61 6.53 -2.39 -0.02 1.59 16 31 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.50 6.74 -2.39 -0.02 1.48 16 34 H 0.05 2.39 7.14 -2.39 -0.02 2.37 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.05 7.10 -2.39 -0.02 2.03 16 37 H 0.41 14.45 6.15 -92.71 -0.57 13.88 16 38 H 0.14 3.70 6.56 -2.91 -0.02 3.68 16 39 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.19 2.75 8.06 -2.92 -0.02 2.73 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 1.44 8.05 -2.38 -0.02 1.43 16 43 H 0.07 2.06 5.94 -2.38 -0.01 2.04 16 Total: -1.00 -56.90 341.68 4.25 -52.65 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.45 Total: 29.43 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.63 Total: 10.30 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -4.80 Total: -113.99 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -56.90 4.25 -52.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153248265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.044 kcal (2) G-P(sol) polarization free energy of solvation -56.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds