Wall clock time and date at job start Tue Mar 31 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21276 * 120.00368 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99629 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46834 * 180.02562 * 7 6 4 9 9 N 1.46499 * 109.46936 * 180.02562 * 8 7 6 10 10 C 1.36934 * 119.99959 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00486 * 359.97438 * 10 9 8 12 12 C 1.38816 * 119.99888 * 179.97438 * 10 9 8 13 13 N 1.31615 * 120.00157 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00015 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47091 * 90.00022 * 14 12 10 16 16 H 1.48497 * 109.47166 * 210.00239 * 14 12 10 17 17 H 1.48505 * 109.47075 * 330.00265 * 14 12 10 18 18 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 19 19 C 1.50696 * 109.47351 * 293.95574 * 18 2 1 20 20 C 1.38238 * 120.00290 * 269.73171 * 19 18 2 21 21 C 1.38236 * 120.00520 * 179.76650 * 20 19 18 22 22 C 1.38238 * 119.99353 * 0.50323 * 21 20 19 23 23 C 1.38236 * 120.00267 * 359.74384 * 22 21 20 24 24 C 1.38231 * 119.99929 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 29 29 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 30 30 H 0.97003 * 120.00555 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47011 * 299.99824 * 7 6 4 32 32 H 1.08999 * 109.47094 * 59.99834 * 7 6 4 33 33 H 1.09006 * 109.46909 * 299.99367 * 8 7 6 34 34 H 1.08999 * 109.47496 * 59.99982 * 8 7 6 35 35 H 0.97002 * 120.00445 * 359.97438 * 9 8 7 36 36 H 0.97001 * 120.00447 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.46995 * 53.95554 * 18 2 1 38 38 H 1.09001 * 109.46848 * 173.95560 * 18 2 1 39 39 H 1.08006 * 119.99743 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00356 * 180.22999 * 21 20 19 41 41 H 1.07998 * 119.99864 * 179.72869 * 22 21 20 42 42 H 1.08000 * 119.99990 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.99738 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4455 2.1407 6 7 2.0182 3.3200 1.5234 7 6 1.6701 3.9767 2.7860 8 6 2.2173 5.4055 2.7854 9 7 1.8698 6.0619 4.0481 10 6 2.2572 7.3553 4.2767 11 1 2.8192 7.8914 3.5263 12 6 1.9275 7.9775 5.4730 13 7 1.2421 7.3245 6.3874 14 14 2.4565 9.7417 5.7851 15 1 1.4020 10.6678 5.2999 16 1 2.6633 9.9462 7.2413 17 1 3.7248 10.0134 5.0620 18 6 1.9954 -0.7660 -1.1377 19 6 1.6369 -2.2204 -0.9730 20 6 2.4964 -3.0730 -0.3056 21 6 2.1653 -4.4061 -0.1504 22 6 0.9794 -4.8889 -0.6716 23 6 0.1223 -4.0374 -1.3434 24 6 0.4512 -2.7034 -1.4945 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 2.5229 3.8015 0.8493 31 1 0.5860 4.0033 2.8948 32 1 2.1052 3.4209 3.6166 33 1 3.3016 5.3792 2.6764 34 1 1.7819 5.9611 1.9548 35 1 1.3654 5.5805 4.7224 36 1 1.0120 7.7591 7.2235 37 1 1.5611 -0.3872 -2.0628 38 1 3.0797 -0.6611 -1.1757 39 1 3.4251 -2.6968 0.0974 40 1 2.8350 -5.0713 0.3742 41 1 0.7227 -5.9313 -0.5541 42 1 -0.8040 -4.4148 -1.7509 43 1 -0.2183 -2.0383 -2.0197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153314842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:21 Heat of formation + Delta-G solvation = 11.589303 kcal Electronic energy + Delta-G solvation = -21873.786004 eV Core-core repulsion = 18533.425344 eV Total energy + Delta-G solvation = -3340.360660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03331 -39.35694 -36.94800 -35.54764 -33.81026 -32.05805 -31.26065 -31.15269 -28.91046 -27.41041 -26.89734 -23.87051 -22.95346 -22.71408 -21.45757 -21.06995 -20.20113 -17.43002 -17.18529 -16.77774 -16.13270 -16.01373 -15.50500 -15.27942 -15.06696 -14.67317 -14.48189 -14.13553 -13.81567 -13.63289 -13.22692 -13.15542 -12.97612 -12.85749 -12.67713 -12.25171 -11.86390 -11.83765 -11.31977 -11.25109 -11.21122 -11.10481 -10.82488 -10.79857 -10.12234 -9.83715 -9.61946 -9.14653 -9.06911 -8.97492 -8.80407 -8.49259 -6.99661 -5.79749 -3.10542 1.06554 1.16889 2.76312 3.07366 3.42044 3.46359 3.48887 3.53502 3.98441 4.45758 4.55757 4.57716 4.74876 4.77489 4.84405 4.96836 5.00008 5.09515 5.17039 5.25690 5.35260 5.43947 5.47553 5.50120 5.55750 5.73622 5.79028 5.79365 5.96492 6.02832 6.16293 6.19646 6.26692 6.35615 6.50945 6.65247 6.70849 6.74988 6.78217 6.80104 7.65230 7.66524 8.37128 8.39890 9.49007 10.04066 10.38688 11.42787 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.049216 B = 0.002036 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.787203 B =13751.184513 C =13854.277958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.518 5.518 3 C 0.036 3.964 4 C 0.510 3.490 5 O -0.522 6.522 6 N -0.726 5.726 7 C 0.113 3.887 8 C 0.145 3.855 9 N -0.730 5.730 10 C -0.244 4.244 11 H 0.072 0.928 12 C -0.013 4.013 13 N -0.930 5.930 14 Si 0.911 3.089 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.281 1.281 18 C 0.093 3.907 19 C -0.076 4.076 20 C -0.096 4.096 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.113 4.113 25 H 0.071 0.929 26 H 0.019 0.981 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -21.886 -20.320 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.242 5.242 3 C -0.095 4.095 4 C 0.294 3.706 5 O -0.398 6.398 6 N -0.378 5.378 7 C -0.011 4.011 8 C 0.017 3.983 9 N -0.375 5.375 10 C -0.375 4.375 11 H 0.090 0.910 12 C -0.209 4.209 13 N -0.578 5.578 14 Si 0.741 3.259 15 H -0.216 1.216 16 H -0.217 1.217 17 H -0.207 1.207 18 C -0.035 4.035 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.131 4.131 25 H 0.090 0.910 26 H 0.038 0.962 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.139 -22.369 -19.266 29.544 hybrid contribution 0.057 1.472 -0.576 1.582 sum 1.195 -20.897 -19.841 28.840 Atomic orbital electron populations 1.22645 0.86273 1.03127 1.01151 1.61633 1.09170 1.11379 1.42006 1.21990 1.02071 0.89930 0.95542 1.20386 0.79853 0.81490 0.88823 1.90692 1.38886 1.63881 1.46321 1.45928 1.57895 1.13557 1.20467 1.21549 1.00734 0.93884 0.84927 1.20755 0.97076 0.89453 0.91045 1.42195 1.67084 1.13031 1.15173 1.19191 1.29112 0.88884 1.00351 0.91033 1.24791 1.00798 0.98598 0.96711 1.69666 1.43506 1.36699 1.07961 0.86143 0.78090 0.84493 0.77144 1.21642 1.21679 1.20713 1.21098 1.00548 0.90106 0.91701 1.19675 0.94885 0.94782 0.98273 1.21047 0.99675 0.93221 0.97559 1.21167 0.97152 0.95725 0.99923 1.21156 0.94720 0.99709 0.98396 1.21107 0.99616 0.93697 0.99672 1.21061 0.96295 0.95643 1.00124 0.91038 0.96212 0.89182 0.87810 0.91863 0.76814 0.91416 0.91301 0.95817 0.95876 0.77995 0.93350 0.93800 0.89730 0.85910 0.86086 0.86266 0.86203 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.78 60.07 0.53 0.70 16 2 N -0.52 -5.64 4.49 -245.82 -1.10 -6.75 16 3 C 0.04 0.35 5.45 -4.97 -0.03 0.32 16 4 C 0.51 7.08 7.52 -10.98 -0.08 7.00 16 5 O -0.52 -9.54 14.33 5.56 0.08 -9.46 16 6 N -0.73 -9.62 5.56 -60.29 -0.33 -9.95 16 7 C 0.11 1.94 5.79 -4.04 -0.02 1.91 16 8 C 0.14 2.83 6.37 -4.04 -0.03 2.80 16 9 N -0.73 -18.62 5.60 -59.91 -0.34 -18.96 16 10 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 11 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 12 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 13 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 14 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.09 0.77 5.12 -4.97 -0.03 0.75 16 19 C -0.08 -0.69 4.88 -104.62 -0.51 -1.20 16 20 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 22 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.11 -0.96 7.97 -39.58 -0.32 -1.28 16 25 H 0.07 0.79 6.17 -51.93 -0.32 0.47 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 1.26 5.82 -51.93 -0.30 0.96 16 28 H 0.10 0.78 7.93 -51.93 -0.41 0.37 16 29 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.39 10.46 7.67 -40.82 -0.31 10.14 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.04 0.32 8.06 -51.93 -0.42 -0.10 16 38 H 0.08 0.59 7.87 -51.93 -0.41 0.19 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.85 8.03 -52.48 -0.42 0.43 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -34.05 358.36 -9.62 -43.67 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.72 Total: 8.23 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.31 Total: -1.86 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -1.05 Total: -63.29 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.05 -9.62 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153314842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.255 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds