Wall clock time and date at job start Tue Mar 31 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21276 * 120.00368 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99629 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46834 * 180.02562 * 7 6 4 9 9 N 1.46499 * 109.46936 * 180.02562 * 8 7 6 10 10 C 1.36934 * 119.99959 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00486 * 359.97438 * 10 9 8 12 12 C 1.38816 * 119.99888 * 179.97438 * 10 9 8 13 13 N 1.31615 * 120.00157 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00015 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47091 * 90.00022 * 14 12 10 16 16 H 1.48497 * 109.47166 * 210.00239 * 14 12 10 17 17 H 1.48505 * 109.47075 * 330.00265 * 14 12 10 18 18 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 19 19 C 1.50696 * 109.47351 * 293.95574 * 18 2 1 20 20 C 1.38238 * 120.00290 * 269.73171 * 19 18 2 21 21 C 1.38236 * 120.00520 * 179.76650 * 20 19 18 22 22 C 1.38238 * 119.99353 * 0.50323 * 21 20 19 23 23 C 1.38236 * 120.00267 * 359.74384 * 22 21 20 24 24 C 1.38231 * 119.99929 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 29 29 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 30 30 H 0.97003 * 120.00555 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47011 * 299.99824 * 7 6 4 32 32 H 1.08999 * 109.47094 * 59.99834 * 7 6 4 33 33 H 1.09006 * 109.46909 * 299.99367 * 8 7 6 34 34 H 1.08999 * 109.47496 * 59.99982 * 8 7 6 35 35 H 0.97002 * 120.00445 * 359.97438 * 9 8 7 36 36 H 0.97001 * 120.00447 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.46995 * 53.95554 * 18 2 1 38 38 H 1.09001 * 109.46848 * 173.95560 * 18 2 1 39 39 H 1.08006 * 119.99743 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00356 * 180.22999 * 21 20 19 41 41 H 1.07998 * 119.99864 * 179.72869 * 22 21 20 42 42 H 1.08000 * 119.99990 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.99738 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4455 2.1407 6 7 2.0182 3.3200 1.5234 7 6 1.6701 3.9767 2.7860 8 6 2.2173 5.4055 2.7854 9 7 1.8698 6.0619 4.0481 10 6 2.2572 7.3553 4.2767 11 1 2.8192 7.8914 3.5263 12 6 1.9275 7.9775 5.4730 13 7 1.2421 7.3245 6.3874 14 14 2.4565 9.7417 5.7851 15 1 1.4020 10.6678 5.2999 16 1 2.6633 9.9462 7.2413 17 1 3.7248 10.0134 5.0620 18 6 1.9954 -0.7660 -1.1377 19 6 1.6369 -2.2204 -0.9730 20 6 2.4964 -3.0730 -0.3056 21 6 2.1653 -4.4061 -0.1504 22 6 0.9794 -4.8889 -0.6716 23 6 0.1223 -4.0374 -1.3434 24 6 0.4512 -2.7034 -1.4945 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 2.5229 3.8015 0.8493 31 1 0.5860 4.0033 2.8948 32 1 2.1052 3.4209 3.6166 33 1 3.3016 5.3792 2.6764 34 1 1.7819 5.9611 1.9548 35 1 1.3654 5.5805 4.7224 36 1 1.0120 7.7591 7.2235 37 1 1.5611 -0.3872 -2.0628 38 1 3.0797 -0.6611 -1.1757 39 1 3.4251 -2.6968 0.0974 40 1 2.8350 -5.0713 0.3742 41 1 0.7227 -5.9313 -0.5541 42 1 -0.8040 -4.4148 -1.7509 43 1 -0.2183 -2.0383 -2.0197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153314842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:21 Heat of formation + Delta-G solvation = -12.958375 kcal Electronic energy + Delta-G solvation = -21874.850471 eV Core-core repulsion = 18533.425344 eV Total energy + Delta-G solvation = -3341.425127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97757 -40.14267 -37.85791 -37.07338 -35.44254 -33.21733 -32.64165 -31.76225 -30.20789 -28.46306 -27.87954 -25.57544 -23.99403 -23.35894 -22.98123 -21.74339 -21.31067 -19.32064 -18.22371 -17.50884 -17.12017 -16.98667 -16.63165 -16.34729 -16.08533 -16.01582 -15.53898 -15.31083 -15.02633 -14.97622 -14.70430 -14.23324 -13.96348 -13.64973 -13.41046 -13.21344 -13.04123 -12.84814 -12.71810 -12.64519 -12.51386 -12.42508 -12.08166 -11.89466 -11.85925 -11.79130 -10.99025 -10.81514 -10.09181 -9.75949 -9.69144 -9.23408 -9.06772 -7.96964 -5.28501 0.44894 0.55539 1.48314 1.50892 1.59334 1.68700 2.04319 2.57037 2.82037 3.25394 3.37155 3.78199 3.84559 3.99242 4.04781 4.18545 4.20240 4.21381 4.27691 4.33704 4.35142 4.41726 4.50159 4.59513 4.60716 4.66805 4.76173 4.83156 5.03494 5.12633 5.14552 5.16150 5.20657 5.43281 5.50416 5.59399 5.66809 5.72565 5.92724 6.05108 6.17662 6.23745 6.63808 7.29717 7.33482 8.02120 8.24732 9.26719 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.049216 B = 0.002036 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.787203 B =13751.184513 C =13854.277958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.045 3.955 4 C 0.506 3.494 5 O -0.572 6.572 6 N -0.713 5.713 7 C 0.131 3.869 8 C 0.149 3.851 9 N -0.748 5.748 10 C -0.248 4.248 11 H 0.084 0.916 12 C -0.079 4.079 13 N -0.971 5.971 14 Si 0.981 3.019 15 H -0.286 1.286 16 H -0.297 1.297 17 H -0.265 1.265 18 C 0.097 3.903 19 C -0.090 4.090 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.122 4.122 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.418 0.582 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.373 0.627 36 H 0.252 0.748 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 -21.718 -22.762 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.086 4.086 4 C 0.293 3.707 5 O -0.451 6.451 6 N -0.367 5.367 7 C 0.005 3.995 8 C 0.023 3.977 9 N -0.392 5.392 10 C -0.379 4.379 11 H 0.102 0.898 12 C -0.271 4.271 13 N -0.622 5.622 14 Si 0.809 3.191 15 H -0.213 1.213 16 H -0.224 1.224 17 H -0.190 1.190 18 C -0.030 4.030 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.141 4.141 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.110 0.890 30 H 0.255 0.745 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.205 0.795 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.145 0.855 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.327 -22.199 -21.797 31.198 hybrid contribution -0.301 1.319 0.117 1.358 sum 2.026 -20.880 -21.679 30.168 Atomic orbital electron populations 1.22470 0.87044 1.02410 1.00536 1.61546 1.08778 1.12309 1.43866 1.22021 1.03907 0.89343 0.93312 1.21257 0.78533 0.81082 0.89834 1.90685 1.41043 1.64984 1.48338 1.45726 1.57898 1.13649 1.19414 1.21074 0.99253 0.92758 0.86377 1.20856 0.97813 0.90201 0.88873 1.42450 1.67029 1.12774 1.16905 1.19664 1.28029 0.89862 1.00383 0.89798 1.25704 1.01631 1.02977 0.96835 1.69840 1.45458 1.38485 1.08378 0.85040 0.78219 0.79342 0.76516 1.21281 1.22353 1.18958 1.21132 1.01400 0.89190 0.91235 1.19875 0.95219 0.95378 0.98585 1.21250 1.00145 0.93775 0.98051 1.21436 0.97727 0.95888 1.00093 1.21458 0.94564 1.00760 0.98067 1.21412 1.00335 0.93716 0.99532 1.21274 0.96385 0.96162 1.00255 0.91457 0.94387 0.92451 0.84856 0.88972 0.74532 0.93249 0.93286 0.94400 0.94394 0.79544 0.93922 0.92260 0.88242 0.85545 0.84744 0.84481 0.84498 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.78 127.69 1.12 1.63 16 2 N -0.54 -10.82 4.49 -931.64 -4.18 -15.00 16 3 C 0.04 0.74 5.45 85.56 0.47 1.21 16 4 C 0.51 13.48 7.52 87.66 0.66 14.14 16 5 O -0.57 -21.25 14.33 -3.02 -0.04 -21.30 16 6 N -0.71 -17.77 5.56 -463.05 -2.57 -20.34 16 7 C 0.13 4.47 5.79 86.38 0.50 4.97 16 8 C 0.15 5.65 6.37 86.38 0.55 6.20 16 9 N -0.75 -38.26 5.60 -343.46 -1.92 -40.19 16 10 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 11 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 12 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 13 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 14 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 18 C 0.10 1.38 5.12 85.55 0.44 1.82 16 19 C -0.09 -1.53 4.88 -19.87 -0.10 -1.63 16 20 C -0.11 -1.97 9.70 22.27 0.22 -1.76 16 21 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 22 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 24 C -0.12 -1.93 7.97 22.27 0.18 -1.75 16 25 H 0.07 1.48 6.17 -2.39 -0.01 1.46 16 26 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 1.64 5.82 -2.38 -0.01 1.62 16 28 H 0.13 1.46 7.93 -2.39 -0.02 1.44 16 29 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.42 7.17 8.47 -92.71 -0.79 6.39 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.37 20.74 7.67 -92.71 -0.71 20.03 16 36 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 38 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 39 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.13 1.65 8.03 -2.91 -0.02 1.63 16 Total: -1.00 -74.73 358.36 -0.89 -75.62 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.49 Total: 30.88 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.01 Total: 2.53 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -8.40 Total: -135.57 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.04 Total: -21.30 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.73 -0.89 -75.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153314842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.662 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds