Wall clock time and date at job start Tue Mar 31 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46499 * 119.99661 * 269.99401 * 3 2 1 5 5 C 1.39039 * 120.00223 * 90.00088 * 3 2 1 6 6 C 1.39224 * 119.92964 * 359.72380 * 5 3 2 7 7 C 1.37612 * 120.06573 * 179.72871 * 6 5 3 8 8 C 1.39795 * 119.93236 * 0.56102 * 7 6 5 9 9 C 1.47516 * 120.07091 * 179.68030 * 8 7 6 10 10 O 1.21597 * 120.00488 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99682 * 0.03108 * 9 8 7 12 12 C 1.46507 * 119.99816 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47022 * 179.97438 * 12 11 9 14 14 N 1.46502 * 109.46693 * 180.02562 * 13 12 11 15 15 C 1.36944 * 119.99459 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00347 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99422 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00815 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99659 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46936 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46989 * 119.99837 * 19 17 15 22 22 H 1.48496 * 109.46890 * 239.99723 * 19 17 15 23 23 C 1.39793 * 119.86072 * 359.71115 * 8 7 6 24 24 C 1.37613 * 119.93504 * 359.97438 * 23 8 7 25 25 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 29 29 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 30 30 H 1.09003 * 109.47033 * 90.00622 * 4 3 2 31 31 H 1.09000 * 109.47241 * 210.00440 * 4 3 2 32 32 H 1.09000 * 109.47127 * 330.00198 * 4 3 2 33 33 H 1.07994 * 119.96656 * 0.02562 * 6 5 3 34 34 H 1.08005 * 120.03334 * 180.27118 * 7 6 5 35 35 H 0.96995 * 120.00254 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.47093 * 300.00530 * 12 11 9 37 37 H 1.08998 * 109.46852 * 60.00169 * 12 11 9 38 38 H 1.08990 * 109.47329 * 299.99999 * 13 12 11 39 39 H 1.08998 * 109.46965 * 60.00488 * 13 12 11 40 40 H 0.96995 * 120.00259 * 0.02562 * 14 13 12 41 41 H 0.96999 * 120.00518 * 180.02562 * 18 17 15 42 42 H 1.08003 * 120.03826 * 179.97438 * 23 8 7 43 43 H 1.07992 * 119.96830 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 2.2501 2.0368 1.2041 6 6 2.0121 1.3810 2.4090 7 6 2.2458 2.0252 3.6023 8 6 2.7115 3.3433 3.6040 9 6 2.9563 4.0392 4.8815 10 8 3.3609 5.1858 4.8815 11 7 2.7316 3.4038 6.0487 12 6 2.9753 4.0947 7.3175 13 6 2.6434 3.1575 8.4804 14 7 2.8865 3.8486 9.7491 15 6 2.6581 3.2031 10.9350 16 1 2.2984 2.1848 10.9351 17 6 2.8879 3.8581 12.1371 18 7 3.3258 5.0993 12.1372 19 14 2.5757 2.9778 13.7549 20 1 2.0897 1.6012 13.4836 21 1 3.8378 2.9130 14.5348 22 1 1.5510 3.7199 14.5324 23 6 2.9440 4.0009 2.3925 24 6 2.7146 3.3492 1.2024 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.3543 2.5856 -1.5835 31 1 3.0645 2.7984 -1.1385 32 1 2.5507 1.3450 -2.0283 33 1 1.6484 0.3642 2.4070 34 1 2.0652 1.5145 4.5367 35 1 2.4086 2.4892 6.0487 36 1 4.0232 4.3893 7.3753 37 1 2.3448 4.9819 7.3749 38 1 1.5955 2.8634 8.4223 39 1 3.2736 2.2700 8.4231 40 1 3.2092 4.7633 9.7490 41 1 3.4868 5.5568 12.9772 42 1 3.3034 5.0194 2.3904 43 1 2.8937 3.8568 0.2661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153426729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:17 Heat of formation + Delta-G solvation = 9.764047 kcal Electronic energy + Delta-G solvation = -21952.634428 eV Core-core repulsion = 18612.194619 eV Total energy + Delta-G solvation = -3340.439809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30237 -39.05073 -36.62021 -35.57889 -33.81933 -32.31438 -31.24296 -30.98741 -29.98222 -27.65220 -26.54647 -24.34941 -23.34245 -22.46354 -21.64325 -21.29917 -19.97107 -18.30132 -17.26626 -16.91645 -16.35978 -15.48491 -15.23886 -15.17842 -15.07002 -14.54695 -14.34765 -14.01019 -13.76409 -13.72943 -13.49738 -13.12219 -12.97188 -12.87162 -12.72511 -12.53243 -12.36420 -12.18394 -11.54957 -11.37214 -11.07976 -10.97607 -10.80539 -10.75684 -10.13451 -10.06531 -9.83427 -9.63360 -9.18700 -8.94289 -8.74607 -7.62226 -6.96030 -5.76822 -3.07361 0.96762 1.26782 2.66590 3.00847 3.40479 3.44012 3.50026 3.51909 3.90948 4.37220 4.45411 4.60419 4.71250 4.71879 4.78109 4.92590 4.94943 5.02703 5.15268 5.16317 5.27347 5.29432 5.39316 5.45448 5.53598 5.60675 5.72842 5.83926 5.84842 5.95918 6.02129 6.10868 6.22160 6.35264 6.51939 6.58194 6.76144 6.83572 6.84324 7.10992 7.68959 7.76019 8.40565 8.47508 9.52093 10.07486 10.42346 11.45853 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.002325 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.982297 B =12040.522900 C =12827.869177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.627 5.627 4 C 0.090 3.910 5 C 0.237 3.763 6 C -0.207 4.207 7 C -0.035 4.035 8 C -0.192 4.192 9 C 0.559 3.441 10 O -0.547 6.547 11 N -0.722 5.722 12 C 0.112 3.888 13 C 0.144 3.856 14 N -0.730 5.730 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.010 4.010 24 C -0.210 4.210 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.135 0.865 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -10.905 -30.165 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.337 5.337 4 C -0.053 4.053 5 C 0.134 3.866 6 C -0.229 4.229 7 C -0.055 4.055 8 C -0.197 4.197 9 C 0.347 3.653 10 O -0.426 6.426 11 N -0.373 5.373 12 C -0.012 4.012 13 C 0.016 3.984 14 N -0.375 5.375 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.029 4.029 24 C -0.232 4.232 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.232 0.768 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.152 0.848 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.854 -10.305 -30.196 32.138 hybrid contribution -0.278 -0.626 0.912 1.140 sum -4.132 -10.930 -29.284 31.530 Atomic orbital electron populations 1.22234 0.96130 1.02170 1.02711 1.21482 0.94284 0.82065 1.02904 1.46443 1.70577 1.13390 1.03293 1.21692 1.01060 0.97726 0.84845 1.18001 0.91455 0.91360 0.85780 1.20578 1.10538 1.01079 0.90753 1.21073 0.93600 0.93043 0.97753 1.19719 1.10842 0.95599 0.93533 1.18162 0.77487 0.85993 0.83628 1.90767 1.46489 1.17661 1.87708 1.45840 1.68024 1.17498 1.05947 1.21568 1.01801 0.96214 0.81623 1.20759 0.97829 0.94071 0.85720 1.42206 1.80402 1.15288 0.99588 1.19241 1.37383 0.96829 0.83862 0.90981 1.24788 1.01995 0.96369 0.97823 1.69678 1.51585 1.10911 1.25692 0.86076 0.77380 0.78541 0.83920 1.20526 1.21794 1.21800 1.21005 0.92276 0.99364 0.90274 1.20629 1.09865 0.94113 0.98627 0.92523 0.91627 0.92018 0.90331 0.90740 0.93219 0.91017 0.91469 0.85515 0.85587 0.76823 0.91253 0.91262 0.95810 0.95804 0.77984 0.93428 0.84758 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.12 0.59 5.90 -4.04 -0.02 0.56 16 3 N -0.63 -4.31 2.99 -179.62 -0.54 -4.85 16 4 C 0.09 0.44 10.22 59.85 0.61 1.05 16 5 C 0.24 2.17 6.55 -83.86 -0.55 1.62 16 6 C -0.21 -1.89 9.18 -39.44 -0.36 -2.25 16 7 C -0.04 -0.36 9.53 -39.23 -0.37 -0.74 16 8 C -0.19 -2.48 5.88 -104.95 -0.62 -3.10 16 9 C 0.56 9.03 7.76 -12.48 -0.10 8.93 16 10 O -0.55 -10.90 16.34 5.28 0.09 -10.81 16 11 N -0.72 -10.85 5.51 -61.35 -0.34 -11.19 16 12 C 0.11 2.03 5.79 -4.04 -0.02 2.01 16 13 C 0.14 2.92 6.37 -4.04 -0.03 2.89 16 14 N -0.73 -18.96 5.60 -59.91 -0.34 -19.29 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 19 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C -0.01 -0.11 9.58 -39.23 -0.38 -0.49 16 24 C -0.21 -2.04 9.18 -39.44 -0.36 -2.40 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.39 6.18 -51.93 -0.32 0.07 16 29 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.34 6.17 -51.93 -0.32 0.02 16 32 H 0.07 0.22 7.89 -51.93 -0.41 -0.19 16 33 H 0.13 0.90 6.12 -52.49 -0.32 0.58 16 34 H 0.13 1.06 6.39 -52.48 -0.34 0.72 16 35 H 0.40 4.77 6.49 -40.82 -0.26 4.50 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.39 10.62 7.67 -40.82 -0.31 10.31 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.13 1.63 7.64 -52.48 -0.40 1.23 16 43 H 0.13 0.97 6.11 -52.49 -0.32 0.65 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -34.60 355.87 -8.47 -43.07 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.35 Total: 8.00 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.06 Total: 0.11 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.49 Total: -63.24 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.60 -8.47 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153426729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.830 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds