Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46499 * 119.99661 * 269.99401 * 3 2 1 5 5 C 1.39039 * 120.00223 * 90.00088 * 3 2 1 6 6 C 1.39224 * 119.92964 * 359.72380 * 5 3 2 7 7 C 1.37612 * 120.06573 * 179.72871 * 6 5 3 8 8 C 1.39795 * 119.93236 * 0.56102 * 7 6 5 9 9 C 1.47516 * 120.07091 * 179.68030 * 8 7 6 10 10 O 1.21597 * 120.00488 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99682 * 0.03108 * 9 8 7 12 12 C 1.46507 * 119.99816 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47022 * 179.97438 * 12 11 9 14 14 N 1.46502 * 109.46693 * 180.02562 * 13 12 11 15 15 C 1.36944 * 119.99459 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00347 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99422 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00815 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99659 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46936 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46989 * 119.99837 * 19 17 15 22 22 H 1.48496 * 109.46890 * 239.99723 * 19 17 15 23 23 C 1.39793 * 119.86072 * 359.71115 * 8 7 6 24 24 C 1.37613 * 119.93504 * 359.97438 * 23 8 7 25 25 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 29 29 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 30 30 H 1.09003 * 109.47033 * 90.00622 * 4 3 2 31 31 H 1.09000 * 109.47241 * 210.00440 * 4 3 2 32 32 H 1.09000 * 109.47127 * 330.00198 * 4 3 2 33 33 H 1.07994 * 119.96656 * 0.02562 * 6 5 3 34 34 H 1.08005 * 120.03334 * 180.27118 * 7 6 5 35 35 H 0.96995 * 120.00254 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.47093 * 300.00530 * 12 11 9 37 37 H 1.08998 * 109.46852 * 60.00169 * 12 11 9 38 38 H 1.08990 * 109.47329 * 299.99999 * 13 12 11 39 39 H 1.08998 * 109.46965 * 60.00488 * 13 12 11 40 40 H 0.96995 * 120.00259 * 0.02562 * 14 13 12 41 41 H 0.96999 * 120.00518 * 180.02562 * 18 17 15 42 42 H 1.08003 * 120.03826 * 179.97438 * 23 8 7 43 43 H 1.07992 * 119.96830 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 2.2501 2.0368 1.2041 6 6 2.0121 1.3810 2.4090 7 6 2.2458 2.0252 3.6023 8 6 2.7115 3.3433 3.6040 9 6 2.9563 4.0392 4.8815 10 8 3.3609 5.1858 4.8815 11 7 2.7316 3.4038 6.0487 12 6 2.9753 4.0947 7.3175 13 6 2.6434 3.1575 8.4804 14 7 2.8865 3.8486 9.7491 15 6 2.6581 3.2031 10.9350 16 1 2.2984 2.1848 10.9351 17 6 2.8879 3.8581 12.1371 18 7 3.3258 5.0993 12.1372 19 14 2.5757 2.9778 13.7549 20 1 2.0897 1.6012 13.4836 21 1 3.8378 2.9130 14.5348 22 1 1.5510 3.7199 14.5324 23 6 2.9440 4.0009 2.3925 24 6 2.7146 3.3492 1.2024 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.3543 2.5856 -1.5835 31 1 3.0645 2.7984 -1.1385 32 1 2.5507 1.3450 -2.0283 33 1 1.6484 0.3642 2.4070 34 1 2.0652 1.5145 4.5367 35 1 2.4086 2.4892 6.0487 36 1 4.0232 4.3893 7.3753 37 1 2.3448 4.9819 7.3749 38 1 1.5955 2.8634 8.4223 39 1 3.2736 2.2700 8.4231 40 1 3.2092 4.7633 9.7490 41 1 3.4868 5.5568 12.9772 42 1 3.3034 5.0194 2.3904 43 1 2.8937 3.8568 0.2661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153426729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = -13.663930 kcal Electronic energy + Delta-G solvation = -21953.650341 eV Core-core repulsion = 18612.194619 eV Total energy + Delta-G solvation = -3341.455722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25011 -40.05105 -37.46804 -37.13616 -35.52606 -33.32842 -32.71057 -31.75062 -30.86136 -29.18450 -27.20385 -25.76143 -24.58351 -23.28484 -23.06110 -22.32030 -20.95993 -19.45538 -19.00352 -17.84166 -17.24403 -16.69713 -16.63623 -16.33349 -15.97210 -15.65650 -15.40670 -15.18031 -15.09409 -14.86176 -14.68064 -14.41730 -14.12742 -13.48946 -13.44100 -13.24060 -13.07923 -13.04219 -12.90441 -12.68741 -12.68412 -12.48514 -12.04248 -11.99896 -11.85476 -11.60638 -11.02393 -11.00359 -10.85337 -10.15154 -9.97105 -9.06619 -8.28370 -7.96370 -5.28127 0.07448 0.49686 1.48796 1.50637 1.60771 1.93248 2.12133 2.15853 2.58822 2.99070 3.37771 3.79535 3.82133 3.93786 4.03249 4.10675 4.17381 4.22270 4.33203 4.34661 4.39885 4.49981 4.57909 4.60082 4.64914 4.73200 4.91513 4.93047 4.96192 5.02342 5.10987 5.13257 5.24877 5.32981 5.37778 5.38829 5.49247 5.53269 5.76613 6.24261 6.29820 6.45906 6.57716 7.24723 7.30300 8.01828 8.25338 9.27599 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.002325 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.982297 B =12040.522900 C =12827.869177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 N -0.624 5.624 4 C 0.082 3.918 5 C 0.243 3.757 6 C -0.209 4.209 7 C -0.030 4.030 8 C -0.220 4.220 9 C 0.557 3.443 10 O -0.596 6.596 11 N -0.709 5.709 12 C 0.128 3.872 13 C 0.150 3.850 14 N -0.748 5.748 15 C -0.246 4.246 16 H 0.084 0.916 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.021 4.021 24 C -0.213 4.213 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.414 0.586 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.120 0.880 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 -14.059 -31.940 35.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.331 5.331 4 C -0.061 4.061 5 C 0.136 3.864 6 C -0.231 4.231 7 C -0.049 4.049 8 C -0.226 4.226 9 C 0.348 3.652 10 O -0.479 6.479 11 N -0.362 5.362 12 C 0.003 3.997 13 C 0.023 3.977 14 N -0.391 5.391 15 C -0.378 4.378 16 H 0.102 0.898 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.809 3.191 20 H -0.185 1.185 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.041 4.041 24 C -0.236 4.236 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.138 0.862 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.862 -13.550 -32.042 35.128 hybrid contribution -0.016 0.257 1.217 1.244 sum -4.879 -13.293 -30.825 33.922 Atomic orbital electron populations 1.22190 0.95945 1.02851 1.01823 1.21694 0.94352 0.81081 1.04163 1.46747 1.69180 1.14073 1.03142 1.21884 1.01390 0.98406 0.84376 1.18180 0.90140 0.91143 0.86904 1.20834 1.10044 1.02031 0.90187 1.21241 0.92572 0.91863 0.99234 1.19511 1.14259 0.96945 0.91857 1.18732 0.76289 0.85510 0.84699 1.90731 1.48876 1.19874 1.88382 1.45619 1.67873 1.18102 1.04610 1.21157 1.00370 0.95553 0.82591 1.20843 0.98700 0.94180 0.83985 1.42449 1.80463 1.15071 1.01117 1.19702 1.36008 0.97284 0.84777 0.89764 1.25712 1.02658 0.97244 1.01575 1.69851 1.53462 1.12670 1.26222 0.84965 0.76787 0.78137 0.79173 1.18490 1.22045 1.22063 1.21009 0.92946 0.99103 0.91053 1.20760 1.09751 0.94617 0.98438 0.92737 0.90217 0.93541 0.89898 0.88722 0.92792 0.90914 0.89407 0.83159 0.83746 0.74814 0.92911 0.92943 0.94336 0.94305 0.79482 0.93912 0.86155 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 71.98 0.74 -0.44 16 2 C 0.11 0.73 5.90 86.38 0.51 1.24 16 3 N -0.62 -6.72 2.99 -722.19 -2.16 -8.88 16 4 C 0.08 0.56 10.22 127.77 1.31 1.86 16 5 C 0.24 3.89 6.55 38.47 0.25 4.14 16 6 C -0.21 -3.28 9.18 22.36 0.21 -3.07 16 7 C -0.03 -0.56 9.53 22.50 0.21 -0.35 16 8 C -0.22 -5.71 5.88 -20.08 -0.12 -5.83 16 9 C 0.56 18.49 7.76 86.69 0.67 19.16 16 10 O -0.60 -25.06 16.34 -4.02 -0.07 -25.12 16 11 N -0.71 -21.28 5.51 -466.27 -2.57 -23.84 16 12 C 0.13 4.75 5.79 86.38 0.50 5.25 16 13 C 0.15 5.95 6.37 86.38 0.55 6.50 16 14 N -0.75 -39.10 5.60 -343.47 -1.92 -41.02 16 15 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 18 N -0.97 -60.95 13.06 21.65 0.28 -60.66 16 19 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 C -0.02 -0.51 9.58 22.50 0.22 -0.30 16 24 C -0.21 -3.91 9.18 22.36 0.21 -3.71 16 25 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 0.51 6.18 -2.39 -0.01 0.50 16 29 H 0.09 0.30 7.89 -2.39 -0.02 0.29 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.50 6.17 -2.39 -0.01 0.49 16 32 H 0.09 0.27 7.89 -2.39 -0.02 0.25 16 33 H 0.15 1.61 6.12 -2.91 -0.02 1.59 16 34 H 0.14 2.07 6.39 -2.91 -0.02 2.05 16 35 H 0.41 9.36 6.49 -92.71 -0.60 8.76 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.37 21.15 7.67 -92.71 -0.71 20.44 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.12 3.15 7.64 -2.91 -0.02 3.13 16 43 H 0.15 2.01 6.11 -2.91 -0.02 1.99 16 Total: -1.00 -75.77 355.87 1.87 -73.90 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.28 Total: 30.03 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.56 Total: 7.27 kcal Atomic # 7 Polarization: -128.04 SS G_CDS: -6.37 Total: -134.41 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.07 Total: -25.12 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -75.77 1.87 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153426729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.236 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds