Wall clock time and date at job start Tue Mar 31 2020 07:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00045 * 2 1 4 4 C 1.46904 * 111.00126 * 123.94946 * 2 1 3 5 5 C 1.52999 * 109.46823 * 76.09375 * 4 2 1 6 6 H 1.09005 * 109.50952 * 303.31399 * 5 4 2 7 7 C 1.53098 * 109.50673 * 183.22317 * 5 4 2 8 8 O 1.43016 * 109.25923 * 183.21614 * 7 5 4 9 9 C 1.43023 * 113.73783 * 58.67401 * 8 7 5 10 10 C 1.53098 * 109.25290 * 301.32614 * 9 8 7 11 11 N 1.47010 * 109.29514 * 56.83131 * 10 9 8 12 12 C 1.39082 * 111.00212 * 177.62671 * 11 10 9 13 13 C 1.38746 * 119.65904 * 56.53472 * 12 11 10 14 14 C 1.40778 * 118.67017 * 179.78279 * 13 12 11 15 15 C 1.41552 * 120.99192 * 180.21445 * 14 13 12 16 16 H 1.08003 * 120.00079 * 27.46597 * 15 14 13 17 17 C 1.40026 * 119.99884 * 207.46249 * 15 14 13 18 18 N 1.30741 * 120.00099 * 11.77546 * 17 15 14 19 19 Si 1.86803 * 120.00139 * 191.77598 * 17 15 14 20 20 H 1.48506 * 109.46900 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47199 * 119.99860 * 19 17 15 22 22 H 1.48500 * 109.46966 * 240.00247 * 19 17 15 23 23 C 1.41182 * 118.01217 * 0.48170 * 14 13 12 24 24 C 1.36556 * 119.14824 * 359.75812 * 23 14 13 25 25 N 1.32095 * 121.26898 * 359.97438 * 24 23 14 26 26 H 1.09000 * 109.47000 * 301.01410 * 1 2 3 27 27 H 1.08997 * 109.46780 * 61.01546 * 1 2 3 28 28 H 1.08999 * 109.46897 * 181.01668 * 1 2 3 29 29 H 1.08998 * 109.47161 * 183.95626 * 3 2 1 30 30 H 1.09001 * 109.46888 * 303.94757 * 3 2 1 31 31 H 1.08997 * 109.47416 * 63.95424 * 3 2 1 32 32 H 1.08995 * 109.47097 * 316.09927 * 4 2 1 33 33 H 1.08991 * 109.47050 * 196.09445 * 4 2 1 34 34 H 1.09005 * 109.50388 * 63.28315 * 7 5 4 35 35 H 1.09001 * 109.50686 * 303.15139 * 7 5 4 36 36 H 1.08998 * 109.50682 * 181.39549 * 9 8 7 37 37 H 1.09002 * 109.53904 * 61.27989 * 9 8 7 38 38 H 1.09002 * 109.50572 * 176.78173 * 10 9 8 39 39 H 1.08997 * 109.51098 * 296.86835 * 10 9 8 40 40 H 1.08001 * 120.66204 * 359.97438 * 13 12 11 41 41 H 0.96999 * 120.00434 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.42928 * 179.77491 * 23 14 13 43 43 H 1.07998 * 119.36903 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.8546 -2.2627 0.8537 6 1 0.8101 -2.4976 0.6486 7 6 2.3285 -3.0609 2.0711 8 8 2.2653 -4.4582 1.7728 9 6 3.0554 -4.8422 0.6441 10 6 2.5887 -4.0621 -0.5877 11 7 2.6761 -2.6208 -0.3118 12 6 2.3102 -1.8764 -1.4282 13 6 1.0639 -2.0723 -2.0056 14 6 0.7131 -1.3044 -3.1321 15 6 -0.5472 -1.4608 -3.7572 16 1 -1.3964 -1.8005 -3.1829 17 6 -0.6930 -1.1750 -5.1202 18 7 0.3647 -0.9886 -5.8658 19 14 -2.3986 -1.0602 -5.8734 20 1 -3.4204 -1.3095 -4.8249 21 1 -2.5971 0.2959 -6.4449 22 1 -2.5342 -2.0754 -6.9487 23 6 1.6582 -0.3776 -3.6232 24 6 2.8628 -0.2579 -2.9912 25 7 3.1575 -0.9909 -1.9326 26 1 -0.3633 0.5295 0.8808 27 1 -0.3633 0.4980 -0.8989 28 1 -0.3633 -1.0275 0.0182 29 1 3.0827 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8525 31 1 1.7044 1.8724 0.9233 32 1 1.4344 -0.5124 2.0371 33 1 3.0474 -0.5214 1.2846 34 1 1.6853 -2.8412 2.9232 35 1 3.3560 -2.7857 2.3092 36 1 2.9378 -5.9108 0.4643 37 1 4.1041 -4.6193 0.8404 38 1 3.2249 -4.3092 -1.4376 39 1 1.5564 -4.3269 -0.8168 40 1 0.3754 -2.7973 -1.5970 41 1 0.2638 -0.7910 -6.8101 42 1 1.4314 0.2291 -4.4874 43 1 3.5886 0.4496 -3.3641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154979414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:48 Heat of formation + Delta-G solvation = 20.192389 kcal Electronic energy + Delta-G solvation = -25144.428884 eV Core-core repulsion = 21804.441282 eV Total energy + Delta-G solvation = -3339.987602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02011 -37.91048 -36.73284 -34.96333 -33.71539 -31.60820 -30.50004 -29.20008 -27.12449 -26.79016 -25.83761 -25.56957 -22.98610 -21.77508 -21.01768 -20.82066 -19.48337 -17.51686 -16.15205 -16.02780 -15.54371 -15.33116 -14.86447 -14.80421 -14.47914 -14.15224 -14.10725 -13.99561 -13.69859 -13.06094 -12.82464 -12.29643 -12.14643 -11.97272 -11.84144 -11.51738 -11.35274 -11.24096 -11.22634 -11.20184 -10.86836 -10.79961 -10.69774 -10.46484 -10.13495 -9.75407 -9.44402 -9.36138 -8.37378 -7.94146 -7.75499 -7.34159 -7.00148 -6.66696 -4.47759 2.84244 2.96575 3.06084 3.10578 3.37773 3.92492 3.95265 4.19362 4.39005 4.77050 5.15483 5.27146 5.30659 5.39329 5.51395 5.53140 5.59711 5.69392 5.75348 5.79355 5.85788 5.90733 5.96672 6.00021 6.09254 6.19025 6.30620 6.32993 6.37417 6.53082 6.87293 6.94660 7.05962 7.12937 7.24673 7.31952 7.46380 7.54577 7.61485 7.61700 7.90653 8.11046 8.36744 8.65177 8.90010 8.96261 9.93310 10.21847 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.005770 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.844141 B = 4851.213610 C = 5290.476957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.514 5.514 3 C 0.039 3.961 4 C 0.068 3.932 5 C 0.065 3.935 6 H 0.051 0.949 7 C 0.071 3.929 8 O -0.388 6.388 9 C 0.066 3.934 10 C 0.030 3.970 11 N -0.485 5.485 12 C 0.347 3.653 13 C -0.283 4.283 14 C 0.145 3.855 15 C -0.466 4.466 16 H 0.073 0.927 17 C 0.078 3.922 18 N -0.799 5.799 19 Si 0.906 3.094 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.206 4.206 24 C 0.095 3.905 25 N -0.536 5.536 26 H 0.010 0.990 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.009 0.991 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.278 0.722 42 H 0.118 0.882 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -0.484 10.097 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.236 5.236 3 C -0.109 4.109 4 C -0.061 4.061 5 C -0.044 4.044 6 H 0.069 0.931 7 C -0.007 4.007 8 O -0.306 6.306 9 C -0.011 4.011 10 C -0.098 4.098 11 N -0.208 5.208 12 C 0.118 3.882 13 C -0.309 4.309 14 C 0.137 3.863 15 C -0.498 4.498 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.426 5.426 19 Si 0.731 3.269 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.229 4.229 24 C -0.057 4.057 25 N -0.251 5.251 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.136 0.864 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.987 -0.546 10.035 10.485 hybrid contribution -2.677 0.397 -0.703 2.796 sum 0.310 -0.149 9.332 9.339 Atomic orbital electron populations 1.22367 0.87679 1.01744 0.99756 1.61856 1.07190 1.13131 1.41407 1.22237 1.00920 0.88704 0.99026 1.21986 1.00566 0.92438 0.91067 1.22260 0.95922 0.95056 0.91147 0.93088 1.22640 1.01203 0.80859 0.96000 1.87935 1.70000 1.23958 1.48698 1.22696 0.94821 0.98592 0.85029 1.22712 1.01086 0.87701 0.98333 1.58798 1.54767 1.03088 1.04184 1.18265 0.89007 0.91608 0.89283 1.21878 0.97802 1.06077 1.05111 1.17537 0.92332 0.87406 0.89038 1.19539 0.95892 1.40542 0.93791 0.90855 1.25852 0.98196 0.92364 0.97475 1.69768 1.30368 1.35293 1.07136 0.86303 0.82662 0.78595 0.79372 1.18588 1.19811 1.20037 1.21871 0.95734 1.02110 1.03146 1.21395 0.95078 0.97065 0.92150 1.66734 1.35821 1.08998 1.13518 0.97206 0.91043 0.91710 0.91342 0.91773 0.97211 0.95020 0.90191 0.89004 0.92345 0.88755 0.92409 0.89841 0.93612 0.89893 0.91072 0.86372 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 8.26 60.06 0.50 1.06 16 2 N -0.51 -9.02 1.67 -251.27 -0.42 -9.44 16 3 C 0.04 0.63 9.51 60.07 0.57 1.20 16 4 C 0.07 1.07 4.50 -3.82 -0.02 1.05 16 5 C 0.07 1.07 2.07 -67.60 -0.14 0.93 16 6 H 0.05 0.92 6.22 -51.93 -0.32 0.60 16 7 C 0.07 0.97 6.29 37.21 0.23 1.20 16 8 O -0.39 -5.80 10.83 -35.23 -0.38 -6.18 16 9 C 0.07 0.91 7.01 37.21 0.26 1.17 16 10 C 0.03 0.51 5.31 -3.71 -0.02 0.49 16 11 N -0.48 -9.13 4.61 -165.40 -0.76 -9.90 16 12 C 0.35 7.60 3.35 -154.97 -0.52 7.08 16 13 C -0.28 -6.66 6.29 -38.43 -0.24 -6.91 16 14 C 0.15 3.71 5.58 -106.56 -0.59 3.12 16 15 C -0.47 -12.05 9.12 -37.65 -0.34 -12.39 16 16 H 0.07 1.86 7.87 -52.48 -0.41 1.45 16 17 C 0.08 1.94 5.27 -17.35 -0.09 1.85 16 18 N -0.80 -20.42 10.86 55.55 0.60 -19.82 16 19 Si 0.91 18.58 29.58 -169.99 -5.03 13.55 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C -0.21 -5.18 8.71 -39.07 -0.34 -5.52 16 24 C 0.10 2.22 11.10 -18.05 -0.20 2.02 16 25 N -0.54 -12.36 9.75 -12.82 -0.13 -12.48 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.17 6.14 -51.93 -0.32 0.85 16 29 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.03 0.43 7.99 -51.93 -0.42 0.02 16 33 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.05 0.83 7.01 -51.93 -0.36 0.47 16 40 H 0.08 1.97 7.02 -52.49 -0.37 1.60 16 41 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 42 H 0.12 3.10 6.25 -52.48 -0.33 2.77 16 43 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -27.90 335.06 -8.73 -36.63 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.72 Total: 6.25 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.95 Total: -3.65 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.70 Total: -51.64 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.38 Total: -6.18 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.90 -8.73 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154979414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.819 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds