Wall clock time and date at job start Tue Mar 31 2020 07:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00045 * 2 1 4 4 C 1.46904 * 111.00126 * 123.94946 * 2 1 3 5 5 C 1.52999 * 109.46823 * 76.09375 * 4 2 1 6 6 H 1.09005 * 109.50952 * 303.31399 * 5 4 2 7 7 C 1.53098 * 109.50673 * 183.22317 * 5 4 2 8 8 O 1.43016 * 109.25923 * 183.21614 * 7 5 4 9 9 C 1.43023 * 113.73783 * 58.67401 * 8 7 5 10 10 C 1.53098 * 109.25290 * 301.32614 * 9 8 7 11 11 N 1.47010 * 109.29514 * 56.83131 * 10 9 8 12 12 C 1.39082 * 111.00212 * 177.62671 * 11 10 9 13 13 C 1.38746 * 119.65904 * 56.53472 * 12 11 10 14 14 C 1.40778 * 118.67017 * 179.78279 * 13 12 11 15 15 C 1.41552 * 120.99192 * 180.21445 * 14 13 12 16 16 H 1.08003 * 120.00079 * 27.46597 * 15 14 13 17 17 C 1.40026 * 119.99884 * 207.46249 * 15 14 13 18 18 N 1.30741 * 120.00099 * 11.77546 * 17 15 14 19 19 Si 1.86803 * 120.00139 * 191.77598 * 17 15 14 20 20 H 1.48506 * 109.46900 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47199 * 119.99860 * 19 17 15 22 22 H 1.48500 * 109.46966 * 240.00247 * 19 17 15 23 23 C 1.41182 * 118.01217 * 0.48170 * 14 13 12 24 24 C 1.36556 * 119.14824 * 359.75812 * 23 14 13 25 25 N 1.32095 * 121.26898 * 359.97438 * 24 23 14 26 26 H 1.09000 * 109.47000 * 301.01410 * 1 2 3 27 27 H 1.08997 * 109.46780 * 61.01546 * 1 2 3 28 28 H 1.08999 * 109.46897 * 181.01668 * 1 2 3 29 29 H 1.08998 * 109.47161 * 183.95626 * 3 2 1 30 30 H 1.09001 * 109.46888 * 303.94757 * 3 2 1 31 31 H 1.08997 * 109.47416 * 63.95424 * 3 2 1 32 32 H 1.08995 * 109.47097 * 316.09927 * 4 2 1 33 33 H 1.08991 * 109.47050 * 196.09445 * 4 2 1 34 34 H 1.09005 * 109.50388 * 63.28315 * 7 5 4 35 35 H 1.09001 * 109.50686 * 303.15139 * 7 5 4 36 36 H 1.08998 * 109.50682 * 181.39549 * 9 8 7 37 37 H 1.09002 * 109.53904 * 61.27989 * 9 8 7 38 38 H 1.09002 * 109.50572 * 176.78173 * 10 9 8 39 39 H 1.08997 * 109.51098 * 296.86835 * 10 9 8 40 40 H 1.08001 * 120.66204 * 359.97438 * 13 12 11 41 41 H 0.96999 * 120.00434 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.42928 * 179.77491 * 23 14 13 43 43 H 1.07998 * 119.36903 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.8546 -2.2627 0.8537 6 1 0.8101 -2.4976 0.6486 7 6 2.3285 -3.0609 2.0711 8 8 2.2653 -4.4582 1.7728 9 6 3.0554 -4.8422 0.6441 10 6 2.5887 -4.0621 -0.5877 11 7 2.6761 -2.6208 -0.3118 12 6 2.3102 -1.8764 -1.4282 13 6 1.0639 -2.0723 -2.0056 14 6 0.7131 -1.3044 -3.1321 15 6 -0.5472 -1.4608 -3.7572 16 1 -1.3964 -1.8005 -3.1829 17 6 -0.6930 -1.1750 -5.1202 18 7 0.3647 -0.9886 -5.8658 19 14 -2.3986 -1.0602 -5.8734 20 1 -3.4204 -1.3095 -4.8249 21 1 -2.5971 0.2959 -6.4449 22 1 -2.5342 -2.0754 -6.9487 23 6 1.6582 -0.3776 -3.6232 24 6 2.8628 -0.2579 -2.9912 25 7 3.1575 -0.9909 -1.9326 26 1 -0.3633 0.5295 0.8808 27 1 -0.3633 0.4980 -0.8989 28 1 -0.3633 -1.0275 0.0182 29 1 3.0827 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8525 31 1 1.7044 1.8724 0.9233 32 1 1.4344 -0.5124 2.0371 33 1 3.0474 -0.5214 1.2846 34 1 1.6853 -2.8412 2.9232 35 1 3.3560 -2.7857 2.3092 36 1 2.9378 -5.9108 0.4643 37 1 4.1041 -4.6193 0.8404 38 1 3.2249 -4.3092 -1.4376 39 1 1.5564 -4.3269 -0.8168 40 1 0.3754 -2.7973 -1.5970 41 1 0.2638 -0.7910 -6.8101 42 1 1.4314 0.2291 -4.4874 43 1 3.5886 0.4496 -3.3641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154979414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:47 Heat of formation + Delta-G solvation = 3.203229 kcal Electronic energy + Delta-G solvation = -25145.165589 eV Core-core repulsion = 21804.441282 eV Total energy + Delta-G solvation = -3340.724307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46866 -39.49266 -38.10716 -36.48451 -35.52678 -32.87092 -32.40753 -30.82837 -28.47567 -28.24597 -27.58580 -27.03886 -24.27651 -23.48563 -22.60680 -22.36773 -20.93726 -19.26433 -17.66784 -17.36957 -17.03274 -16.84885 -16.34525 -16.17004 -16.05236 -15.75081 -15.59988 -15.43222 -15.06433 -14.63511 -14.41577 -14.06513 -13.69395 -13.33254 -13.18572 -13.07919 -12.91588 -12.79643 -12.71683 -12.58883 -12.49283 -12.21876 -12.01072 -11.98273 -11.75127 -11.42870 -11.20385 -10.67673 -10.06149 -9.70856 -9.44696 -9.03933 -8.67658 -8.52011 -6.46064 1.07103 1.14189 1.36428 1.49921 1.60001 2.19533 2.66728 2.87426 2.93936 3.11612 3.84351 3.89040 4.04922 4.12723 4.18586 4.24345 4.29421 4.36545 4.40696 4.46541 4.51735 4.64333 4.68594 4.71612 4.76406 4.86553 4.87031 4.93451 5.04352 5.06476 5.10737 5.12522 5.23923 5.27083 5.40372 5.71447 5.98445 6.04799 6.13843 6.20565 6.25540 6.30490 6.49928 6.75510 6.95531 7.07147 8.06831 8.35925 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.005770 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.844141 B = 4851.213610 C = 5290.476957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.541 5.541 3 C 0.047 3.953 4 C 0.071 3.929 5 C 0.065 3.935 6 H 0.030 0.970 7 C 0.076 3.924 8 O -0.396 6.396 9 C 0.075 3.925 10 C 0.027 3.973 11 N -0.490 5.490 12 C 0.364 3.636 13 C -0.287 4.287 14 C 0.128 3.872 15 C -0.498 4.498 16 H 0.067 0.933 17 C 0.040 3.960 18 N -0.828 5.828 19 Si 0.978 3.022 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.267 1.267 23 C -0.225 4.225 24 C 0.100 3.900 25 N -0.540 5.540 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.286 0.714 42 H 0.102 0.898 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -0.721 11.753 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.264 5.264 3 C -0.101 4.101 4 C -0.057 4.057 5 C -0.044 4.044 6 H 0.048 0.952 7 C -0.002 4.002 8 O -0.315 6.315 9 C -0.002 4.002 10 C -0.101 4.101 11 N -0.214 5.214 12 C 0.136 3.864 13 C -0.313 4.313 14 C 0.119 3.881 15 C -0.530 4.530 16 H 0.085 0.915 17 C -0.175 4.175 18 N -0.455 5.455 19 Si 0.799 3.201 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.192 1.192 23 C -0.248 4.248 24 C -0.052 4.052 25 N -0.255 5.255 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.150 -0.790 11.715 12.157 hybrid contribution -2.658 0.451 -1.163 2.936 sum 0.492 -0.340 10.552 10.569 Atomic orbital electron populations 1.22151 0.87847 1.00743 0.99556 1.61740 1.07271 1.14281 1.43102 1.22123 1.00277 0.88077 0.99591 1.22003 1.00833 0.91465 0.91396 1.22408 0.94467 0.96322 0.91198 0.95177 1.22751 1.02488 0.79788 0.95149 1.87937 1.70304 1.24578 1.48636 1.22736 0.95074 0.99370 0.83033 1.22799 0.99994 0.87140 1.00143 1.58974 1.55086 1.03654 1.03648 1.18447 0.87897 0.90648 0.89456 1.21816 0.98479 1.05959 1.05000 1.17787 0.92651 0.87842 0.89793 1.19742 0.96073 1.42315 0.94869 0.91516 1.26646 1.02126 0.91378 0.97359 1.69824 1.32416 1.35527 1.07772 0.85227 0.77531 0.78978 0.78374 1.18505 1.18834 1.19229 1.21758 0.96755 1.02823 1.03441 1.21646 0.94744 0.97011 0.91818 1.66876 1.35855 1.09339 1.13458 0.94589 0.93764 0.93173 0.91892 0.93369 0.94687 0.92220 0.90155 0.86241 0.91084 0.86206 0.91199 0.90709 0.95453 0.90890 0.90300 0.88030 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.56 8.26 127.69 1.06 2.61 16 2 N -0.54 -18.64 1.67 -948.87 -1.58 -20.22 16 3 C 0.05 1.47 9.51 127.69 1.21 2.69 16 4 C 0.07 2.08 4.50 86.30 0.39 2.47 16 5 C 0.06 2.02 2.07 44.92 0.09 2.11 16 6 H 0.03 1.08 6.22 -2.38 -0.01 1.07 16 7 C 0.08 1.84 6.29 72.01 0.45 2.29 16 8 O -0.40 -10.74 10.83 -148.98 -1.61 -12.36 16 9 C 0.07 1.89 7.01 72.01 0.50 2.40 16 10 C 0.03 0.92 5.31 86.32 0.46 1.37 16 11 N -0.49 -18.08 4.61 -677.21 -3.12 -21.20 16 12 C 0.36 16.07 3.35 132.90 0.44 16.51 16 13 C -0.29 -13.97 6.29 23.01 0.14 -13.82 16 14 C 0.13 6.78 5.58 -21.12 -0.12 6.66 16 15 C -0.50 -26.79 9.12 23.52 0.21 -26.58 16 16 H 0.07 3.54 7.87 -2.91 -0.02 3.52 16 17 C 0.04 2.00 5.27 85.29 0.45 2.45 16 18 N -0.83 -43.34 10.86 21.84 0.24 -43.10 16 19 Si 0.98 38.54 29.58 68.60 2.03 40.56 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.23 -11.71 8.71 22.60 0.20 -11.51 16 24 C 0.10 4.72 11.10 84.26 0.94 5.66 16 25 N -0.54 -24.90 9.75 -194.47 -1.90 -26.80 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.84 6.14 -2.39 -0.01 1.83 16 29 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.43 7.99 -2.39 -0.02 1.41 16 33 H 0.08 2.36 7.88 -2.39 -0.02 2.34 16 34 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.03 1.01 7.01 -2.39 -0.02 0.99 16 40 H 0.07 3.63 7.02 -2.91 -0.02 3.61 16 41 H 0.29 13.57 8.29 -92.71 -0.77 12.80 16 42 H 0.10 5.57 6.25 -2.91 -0.02 5.55 16 43 H 0.13 5.51 8.06 -2.91 -0.02 5.49 16 Total: -1.00 -61.18 335.06 1.48 -59.70 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.99 Total: 28.09 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.43 Total: -4.69 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -6.36 Total: -111.31 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.61 Total: -12.36 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.56 kcal Total: -61.18 1.48 -59.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154979414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.904 kcal (2) G-P(sol) polarization free energy of solvation -61.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds