Wall clock time and date at job start Tue Mar 31 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99808 * 2 1 4 4 C 1.46897 * 111.00051 * 123.95971 * 2 1 3 5 5 C 1.52999 * 109.47031 * 76.07072 * 4 2 1 6 6 H 1.08996 * 109.50656 * 304.58392 * 5 4 2 7 7 C 1.53089 * 109.54287 * 64.70094 * 5 4 2 8 8 O 1.43015 * 109.25973 * 176.80337 * 7 5 4 9 9 C 1.43018 * 113.73774 * 301.32718 * 8 7 5 10 10 C 1.53099 * 109.25740 * 58.66937 * 9 8 7 11 11 N 1.47010 * 109.25484 * 303.15046 * 10 9 8 12 12 C 1.39088 * 110.99668 * 182.39400 * 11 10 9 13 13 C 1.38737 * 119.65613 * 93.43843 * 12 11 10 14 14 C 1.40779 * 118.67075 * 180.02562 * 13 12 11 15 15 C 1.41551 * 120.99513 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00163 * 207.78002 * 15 14 13 17 17 C 1.40024 * 120.00015 * 27.77550 * 15 14 13 18 18 N 1.30741 * 120.00436 * 11.48976 * 17 15 14 19 19 Si 1.86810 * 119.99937 * 191.48794 * 17 15 14 20 20 H 1.48496 * 109.46858 * 94.99268 * 19 17 15 21 21 H 1.48504 * 109.46845 * 214.99083 * 19 17 15 22 22 H 1.48496 * 109.46966 * 334.98997 * 19 17 15 23 23 C 1.41183 * 118.01315 * 359.97438 * 14 13 12 24 24 C 1.36564 * 119.14412 * 0.02562 * 23 14 13 25 25 N 1.32090 * 121.26751 * 359.97438 * 24 23 14 26 26 H 1.08994 * 109.47099 * 300.05243 * 1 2 3 27 27 H 1.09003 * 109.47331 * 60.05944 * 1 2 3 28 28 H 1.09004 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 183.95394 * 3 2 1 30 30 H 1.08994 * 109.47513 * 303.95768 * 3 2 1 31 31 H 1.09002 * 109.47185 * 63.95867 * 3 2 1 32 32 H 1.08996 * 109.46957 * 316.06571 * 4 2 1 33 33 H 1.09003 * 109.46836 * 196.07492 * 4 2 1 34 34 H 1.08998 * 109.50457 * 296.73353 * 7 5 4 35 35 H 1.08997 * 109.51133 * 56.86565 * 7 5 4 36 36 H 1.09003 * 109.50912 * 178.60303 * 9 8 7 37 37 H 1.09001 * 109.50194 * 298.73117 * 9 8 7 38 38 H 1.09006 * 109.50316 * 183.22085 * 10 9 8 39 39 H 1.08991 * 109.50921 * 63.08917 * 10 9 8 40 40 H 1.08007 * 120.66575 * 0.04113 * 13 12 11 41 41 H 0.97000 * 120.00415 * 179.97438 * 18 17 15 42 42 H 1.07994 * 120.42891 * 180.02562 * 23 14 13 43 43 H 1.07999 * 119.36725 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.8540 -2.2628 0.8535 6 1 0.8132 -2.4934 0.6265 7 6 2.7341 -2.6430 -0.3401 8 8 2.6552 -4.0549 -0.5536 9 6 3.0638 -4.8316 0.5757 10 6 2.1871 -4.4736 1.7787 11 7 2.2804 -3.0288 2.0337 12 6 1.5384 -2.6716 3.1545 13 6 2.1553 -2.6116 4.3957 14 6 1.3844 -2.2483 5.5163 15 6 1.9635 -2.1722 6.8057 16 1 1.3547 -2.3400 7.6819 17 6 3.3256 -1.8793 6.9453 18 7 4.0125 -1.4574 5.9160 19 14 4.1616 -2.0915 8.6024 20 1 4.8054 -3.4281 8.6645 21 1 5.1927 -1.0368 8.7753 22 1 3.1511 -1.9779 9.6847 23 6 0.0166 -1.9622 5.3156 24 6 -0.5030 -2.0480 4.0556 25 7 0.2493 -2.3921 3.0258 26 1 -0.3633 0.5146 0.8895 27 1 -0.3634 0.5129 -0.8905 28 1 -0.3633 -1.0277 0.0005 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9163 -0.8523 31 1 1.7044 1.8723 0.9233 32 1 1.4347 -0.5123 2.0371 33 1 3.0476 -0.5218 1.2842 34 1 2.3851 -2.1202 -1.2306 35 1 3.7672 -2.3631 -0.1344 36 1 2.9533 -5.8918 0.3475 37 1 4.1066 -4.6154 0.8080 38 1 2.5317 -5.0211 2.6560 39 1 1.1516 -4.7396 1.5664 40 1 3.2060 -2.8388 4.5002 41 1 4.9560 -1.2542 6.0128 42 1 -0.6109 -1.6792 6.1478 43 1 -1.5488 -1.8295 3.8979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154979416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:52 Heat of formation + Delta-G solvation = 5.350727 kcal Electronic energy + Delta-G solvation = -24483.597635 eV Core-core repulsion = 21142.966450 eV Total energy + Delta-G solvation = -3340.631185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91099 -38.03972 -36.96804 -35.05485 -33.91346 -31.38927 -30.59334 -29.42263 -27.36175 -26.91662 -26.00464 -25.54611 -23.24022 -21.72033 -21.21558 -20.87332 -19.40873 -17.60381 -16.16673 -16.01791 -15.56775 -15.51131 -14.82453 -14.80197 -14.55612 -14.37434 -14.09062 -13.90406 -13.68843 -13.25209 -12.74502 -12.66119 -12.57673 -12.15011 -11.79186 -11.74240 -11.47892 -11.39845 -11.27460 -11.25146 -10.96861 -10.78800 -10.49752 -10.34822 -10.26026 -9.96956 -9.49623 -9.36577 -8.51010 -8.15736 -7.99440 -7.93763 -7.26887 -6.84441 -4.65286 2.60800 2.77590 3.00388 3.03617 3.16741 3.82993 3.98561 4.18259 4.55021 4.60136 5.19016 5.35435 5.39318 5.40957 5.45569 5.53862 5.62887 5.65377 5.72955 5.74950 5.80777 5.90291 5.98466 6.00972 6.04164 6.19380 6.22632 6.25622 6.40408 6.47549 6.59057 6.75255 6.88963 7.10201 7.15210 7.20783 7.28429 7.41362 7.45195 7.54792 7.59346 7.88838 8.19952 8.54430 8.70083 8.70969 9.48136 10.06589 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.005351 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.599499 B = 5231.473346 C = 5706.327609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.547 5.547 3 C 0.027 3.973 4 C 0.069 3.931 5 C 0.071 3.929 6 H 0.064 0.936 7 C 0.077 3.923 8 O -0.391 6.391 9 C 0.065 3.935 10 C 0.029 3.971 11 N -0.473 5.473 12 C 0.271 3.729 13 C -0.179 4.179 14 C 0.130 3.870 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.785 5.785 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.273 4.273 24 C 0.109 3.891 25 N -0.596 5.596 26 H 0.024 0.976 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.132 0.868 41 H 0.283 0.717 42 H 0.100 0.900 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 0.103 -7.794 7.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.271 5.271 3 C -0.121 4.121 4 C -0.060 4.060 5 C -0.038 4.038 6 H 0.082 0.918 7 C 0.000 4.000 8 O -0.310 6.310 9 C -0.012 4.012 10 C -0.098 4.098 11 N -0.196 5.196 12 C 0.048 3.952 13 C -0.203 4.203 14 C 0.122 3.878 15 C -0.487 4.487 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.297 4.297 24 C -0.046 4.046 25 N -0.315 5.315 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.149 0.851 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.245 -0.069 -9.238 9.242 hybrid contribution -0.249 0.489 2.638 2.694 sum -0.003 0.420 -6.600 6.614 Atomic orbital electron populations 1.22363 0.87416 1.02465 0.99791 1.61921 1.08124 1.13342 1.43690 1.22341 1.00556 0.89111 1.00134 1.21983 1.00246 0.92113 0.91612 1.21951 0.98880 0.93074 0.89924 0.91788 1.22692 0.98777 0.80474 0.98088 1.87928 1.87933 1.17877 1.37245 1.22650 0.97705 0.95373 0.85483 1.22717 0.99425 0.88693 0.98974 1.60233 1.52403 1.04227 1.02732 1.19325 0.87660 0.98208 0.89981 1.21816 1.01488 1.06390 0.90591 1.17788 0.90520 0.86076 0.93448 1.19596 0.93719 1.42368 0.93059 0.90103 1.25950 0.97444 0.92236 0.98730 1.69755 1.09618 1.30141 1.31487 0.86219 0.79311 0.78970 0.81797 1.19230 1.20114 1.18529 1.21653 0.97634 1.13290 0.97097 1.21322 0.97243 0.97039 0.88972 1.67246 1.06375 1.22972 1.34922 0.95690 0.92135 0.91000 0.91513 0.91741 0.95782 0.92835 0.90939 0.87880 0.93090 0.88927 0.92456 0.89829 0.93784 0.85077 0.90595 0.88223 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.42 60.06 0.57 0.98 16 2 N -0.55 -8.39 4.45 -251.27 -1.12 -9.51 16 3 C 0.03 0.36 9.51 60.06 0.57 0.93 16 4 C 0.07 1.25 4.28 -3.83 -0.02 1.23 16 5 C 0.07 1.30 1.73 -67.60 -0.12 1.18 16 6 H 0.06 1.30 6.28 -51.93 -0.33 0.97 16 7 C 0.08 1.25 6.14 37.20 0.23 1.47 16 8 O -0.39 -6.53 10.83 -35.23 -0.38 -6.91 16 9 C 0.07 0.98 7.01 37.21 0.26 1.24 16 10 C 0.03 0.52 5.59 -3.71 -0.02 0.50 16 11 N -0.47 -9.58 4.52 -165.41 -0.75 -10.33 16 12 C 0.27 6.26 4.33 -154.98 -0.67 5.59 16 13 C -0.18 -4.53 8.68 -38.44 -0.33 -4.86 16 14 C 0.13 3.36 5.58 -106.56 -0.59 2.77 16 15 C -0.46 -11.61 9.12 -37.65 -0.34 -11.96 16 16 H 0.08 1.98 7.87 -52.48 -0.41 1.56 16 17 C 0.08 1.83 5.28 -17.35 -0.09 1.74 16 18 N -0.78 -19.56 10.88 55.55 0.60 -18.95 16 19 Si 0.91 17.98 29.58 -169.99 -5.03 12.95 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.27 -6.49 9.85 -39.07 -0.38 -6.87 16 24 C 0.11 2.45 11.10 -18.04 -0.20 2.24 16 25 N -0.60 -13.65 8.44 -12.82 -0.11 -13.76 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.14 6.72 -51.93 -0.35 0.79 16 29 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 1.17 6.35 -51.93 -0.33 0.84 16 33 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 34 H 0.10 1.57 7.84 -51.93 -0.41 1.16 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.13 3.48 6.30 -52.48 -0.33 3.15 16 41 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -27.03 342.61 -9.53 -36.56 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.77 Total: 8.59 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.15 Total: -3.81 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -1.37 Total: -52.55 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.38 Total: -6.91 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.03 -9.53 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154979416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.908 kcal (2) G-P(sol) polarization free energy of solvation -27.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds