Wall clock time and date at job start Tue Mar 31 2020 07:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99808 * 2 1 4 4 C 1.46897 * 111.00051 * 123.95971 * 2 1 3 5 5 C 1.52999 * 109.47031 * 76.07072 * 4 2 1 6 6 H 1.08996 * 109.50656 * 304.58392 * 5 4 2 7 7 C 1.53089 * 109.54287 * 64.70094 * 5 4 2 8 8 O 1.43015 * 109.25973 * 176.80337 * 7 5 4 9 9 C 1.43018 * 113.73774 * 301.32718 * 8 7 5 10 10 C 1.53099 * 109.25740 * 58.66937 * 9 8 7 11 11 N 1.47010 * 109.25484 * 303.15046 * 10 9 8 12 12 C 1.39088 * 110.99668 * 182.39400 * 11 10 9 13 13 C 1.38737 * 119.65613 * 93.43843 * 12 11 10 14 14 C 1.40779 * 118.67075 * 180.02562 * 13 12 11 15 15 C 1.41551 * 120.99513 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00163 * 207.78002 * 15 14 13 17 17 C 1.40024 * 120.00015 * 27.77550 * 15 14 13 18 18 N 1.30741 * 120.00436 * 11.48976 * 17 15 14 19 19 Si 1.86810 * 119.99937 * 191.48794 * 17 15 14 20 20 H 1.48496 * 109.46858 * 94.99268 * 19 17 15 21 21 H 1.48504 * 109.46845 * 214.99083 * 19 17 15 22 22 H 1.48496 * 109.46966 * 334.98997 * 19 17 15 23 23 C 1.41183 * 118.01315 * 359.97438 * 14 13 12 24 24 C 1.36564 * 119.14412 * 0.02562 * 23 14 13 25 25 N 1.32090 * 121.26751 * 359.97438 * 24 23 14 26 26 H 1.08994 * 109.47099 * 300.05243 * 1 2 3 27 27 H 1.09003 * 109.47331 * 60.05944 * 1 2 3 28 28 H 1.09004 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 183.95394 * 3 2 1 30 30 H 1.08994 * 109.47513 * 303.95768 * 3 2 1 31 31 H 1.09002 * 109.47185 * 63.95867 * 3 2 1 32 32 H 1.08996 * 109.46957 * 316.06571 * 4 2 1 33 33 H 1.09003 * 109.46836 * 196.07492 * 4 2 1 34 34 H 1.08998 * 109.50457 * 296.73353 * 7 5 4 35 35 H 1.08997 * 109.51133 * 56.86565 * 7 5 4 36 36 H 1.09003 * 109.50912 * 178.60303 * 9 8 7 37 37 H 1.09001 * 109.50194 * 298.73117 * 9 8 7 38 38 H 1.09006 * 109.50316 * 183.22085 * 10 9 8 39 39 H 1.08991 * 109.50921 * 63.08917 * 10 9 8 40 40 H 1.08007 * 120.66575 * 0.04113 * 13 12 11 41 41 H 0.97000 * 120.00415 * 179.97438 * 18 17 15 42 42 H 1.07994 * 120.42891 * 180.02562 * 23 14 13 43 43 H 1.07999 * 119.36725 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.8540 -2.2628 0.8535 6 1 0.8132 -2.4934 0.6265 7 6 2.7341 -2.6430 -0.3401 8 8 2.6552 -4.0549 -0.5536 9 6 3.0638 -4.8316 0.5757 10 6 2.1871 -4.4736 1.7787 11 7 2.2804 -3.0288 2.0337 12 6 1.5384 -2.6716 3.1545 13 6 2.1553 -2.6116 4.3957 14 6 1.3844 -2.2483 5.5163 15 6 1.9635 -2.1722 6.8057 16 1 1.3547 -2.3400 7.6819 17 6 3.3256 -1.8793 6.9453 18 7 4.0125 -1.4574 5.9160 19 14 4.1616 -2.0915 8.6024 20 1 4.8054 -3.4281 8.6645 21 1 5.1927 -1.0368 8.7753 22 1 3.1511 -1.9779 9.6847 23 6 0.0166 -1.9622 5.3156 24 6 -0.5030 -2.0480 4.0556 25 7 0.2493 -2.3921 3.0258 26 1 -0.3633 0.5146 0.8895 27 1 -0.3634 0.5129 -0.8905 28 1 -0.3633 -1.0277 0.0005 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9163 -0.8523 31 1 1.7044 1.8723 0.9233 32 1 1.4347 -0.5123 2.0371 33 1 3.0476 -0.5218 1.2842 34 1 2.3851 -2.1202 -1.2306 35 1 3.7672 -2.3631 -0.1344 36 1 2.9533 -5.8918 0.3475 37 1 4.1066 -4.6154 0.8080 38 1 2.5317 -5.0211 2.6560 39 1 1.1516 -4.7396 1.5664 40 1 3.2060 -2.8388 4.5002 41 1 4.9560 -1.2542 6.0128 42 1 -0.6109 -1.6792 6.1478 43 1 -1.5488 -1.8295 3.8979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154979416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:51 Heat of formation + Delta-G solvation = -12.144340 kcal Electronic energy + Delta-G solvation = -24484.356278 eV Core-core repulsion = 21142.966450 eV Total energy + Delta-G solvation = -3341.389828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48469 -39.69477 -38.25053 -36.64862 -35.70496 -32.78100 -32.44861 -31.12005 -28.52135 -28.38791 -27.87195 -27.00660 -24.58005 -23.54807 -22.81930 -22.31194 -20.97881 -19.36125 -17.82020 -17.49043 -17.17340 -16.91258 -16.38424 -16.13283 -16.09574 -16.01489 -15.65766 -15.23762 -15.12507 -14.73502 -14.45959 -14.32516 -14.22801 -13.44759 -13.25203 -13.08800 -13.01285 -12.92698 -12.70769 -12.61224 -12.54253 -12.22856 -12.04932 -11.93089 -11.86933 -11.50633 -11.27462 -10.81192 -10.19574 -9.93315 -9.75006 -9.44011 -9.01930 -8.66828 -6.59192 0.77537 0.96995 1.37824 1.50755 1.52675 2.17272 2.55666 2.72527 2.90547 3.18287 3.60784 3.78937 3.91444 4.05117 4.13036 4.20770 4.22283 4.27249 4.41829 4.43482 4.53072 4.64203 4.68130 4.70027 4.72831 4.83994 4.86506 4.87708 4.95081 4.96361 4.98739 5.03002 5.13780 5.22302 5.33297 5.54940 5.74392 5.86812 5.96494 6.00895 6.06539 6.17705 6.31698 6.69283 6.80382 6.82138 7.62991 8.26508 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.005351 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.599499 B = 5231.473346 C = 5706.327609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.541 5.541 3 C 0.026 3.974 4 C 0.082 3.918 5 C 0.077 3.923 6 H 0.046 0.954 7 C 0.086 3.914 8 O -0.396 6.396 9 C 0.071 3.929 10 C 0.029 3.971 11 N -0.483 5.483 12 C 0.281 3.719 13 C -0.204 4.204 14 C 0.103 3.897 15 C -0.487 4.487 16 H 0.082 0.918 17 C 0.037 3.963 18 N -0.814 5.814 19 Si 0.987 3.013 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.288 4.288 24 C 0.108 3.892 25 N -0.598 5.598 26 H 0.009 0.991 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.011 0.989 32 H 0.012 0.988 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.055 0.945 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.112 0.888 41 H 0.290 0.710 42 H 0.112 0.888 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 0.069 -8.782 8.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.265 5.265 3 C -0.122 4.122 4 C -0.046 4.046 5 C -0.032 4.032 6 H 0.064 0.936 7 C 0.009 3.991 8 O -0.315 6.315 9 C -0.006 4.006 10 C -0.098 4.098 11 N -0.207 5.207 12 C 0.058 3.942 13 C -0.228 4.228 14 C 0.095 3.905 15 C -0.518 4.518 16 H 0.100 0.900 17 C -0.180 4.180 18 N -0.440 5.440 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.181 1.181 23 C -0.311 4.311 24 C -0.046 4.046 25 N -0.317 5.317 26 H 0.028 0.972 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.652 -0.101 -10.246 10.267 hybrid contribution -0.432 0.530 2.867 2.947 sum 0.220 0.428 -7.379 7.395 Atomic orbital electron populations 1.22357 0.86870 1.01815 1.00540 1.61983 1.08557 1.14435 1.41537 1.22451 1.01203 0.87853 1.00714 1.21751 0.99117 0.92672 0.91104 1.21958 0.98394 0.92863 0.89973 0.93564 1.22649 0.98420 0.80691 0.97357 1.87928 1.88002 1.17897 1.37658 1.22775 0.97172 0.96919 0.83715 1.22799 0.99505 0.87069 1.00385 1.60254 1.51881 1.05841 1.02716 1.19483 0.87763 0.96607 0.90387 1.21697 1.00736 1.08626 0.91741 1.18177 0.91702 0.86557 0.94073 1.19873 0.95027 1.43823 0.93076 0.89968 1.26814 0.97457 0.91170 1.02562 1.69824 1.10208 1.30334 1.33616 0.85114 0.78157 0.79150 0.76859 1.18587 1.19214 1.18063 1.21846 0.97207 1.13836 0.98184 1.21819 0.98622 0.95743 0.88431 1.67391 1.06304 1.23012 1.34985 0.97205 0.89011 0.92378 0.90758 0.88908 0.97032 0.96943 0.91729 0.86413 0.92638 0.85597 0.91700 0.90157 0.94981 0.86990 0.89898 0.87019 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.42 127.69 1.20 2.12 16 2 N -0.54 -16.03 4.45 -948.88 -4.23 -20.26 16 3 C 0.03 0.64 9.51 127.69 1.21 1.85 16 4 C 0.08 3.04 4.28 86.30 0.37 3.41 16 5 C 0.08 2.82 1.73 44.92 0.08 2.89 16 6 H 0.05 1.88 6.28 -2.39 -0.02 1.86 16 7 C 0.09 2.65 6.14 72.01 0.44 3.10 16 8 O -0.40 -12.37 10.83 -148.98 -1.61 -13.98 16 9 C 0.07 2.01 7.01 72.02 0.50 2.51 16 10 C 0.03 1.05 5.59 86.32 0.48 1.53 16 11 N -0.48 -19.87 4.52 -677.25 -3.06 -22.93 16 12 C 0.28 13.37 4.33 132.90 0.58 13.95 16 13 C -0.20 -10.75 8.68 23.01 0.20 -10.55 16 14 C 0.10 5.53 5.58 -21.12 -0.12 5.41 16 15 C -0.49 -25.52 9.12 23.52 0.21 -25.31 16 16 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 17 C 0.04 1.80 5.28 85.29 0.45 2.25 16 18 N -0.81 -41.63 10.88 21.84 0.24 -41.39 16 19 Si 0.99 36.91 29.58 68.60 2.03 38.93 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 23 C -0.29 -13.96 9.85 22.60 0.22 -13.73 16 24 C 0.11 4.89 11.10 84.26 0.94 5.83 16 25 N -0.60 -27.86 8.44 -194.47 -1.64 -29.50 16 26 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 1.80 6.72 -2.38 -0.02 1.79 16 29 H 0.07 1.73 8.07 -2.39 -0.02 1.71 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.01 0.56 6.35 -2.39 -0.02 0.54 16 33 H 0.06 2.45 7.88 -2.39 -0.02 2.43 16 34 H 0.12 3.31 7.84 -2.39 -0.02 3.29 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 6.25 6.30 -2.91 -0.02 6.24 16 41 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 42 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.15 5.58 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -59.94 342.61 -0.51 -60.46 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.99 Total: 33.42 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 6.77 Total: -4.75 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -8.69 Total: -114.08 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.61 Total: -13.98 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.93 kcal Total: -59.94 -0.51 -60.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154979416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.312 kcal (2) G-P(sol) polarization free energy of solvation -59.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds