Wall clock time and date at job start Tue Mar 31 2020 06:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47483 * 2 1 4 4 C 1.46505 * 119.99762 * 86.92531 * 3 2 1 5 5 C 1.53000 * 109.46866 * 86.05568 * 4 3 2 6 6 C 1.34769 * 120.00268 * 266.93032 * 3 2 1 7 7 O 1.21276 * 120.00211 * 4.46170 * 6 3 2 8 8 C 1.50709 * 120.00000 * 184.46488 * 6 3 2 9 9 H 1.09002 * 109.46848 * 38.69753 * 8 6 3 10 10 C 1.52999 * 109.46908 * 278.69385 * 8 6 3 11 11 N 1.46500 * 109.47204 * 158.69468 * 8 6 3 12 12 C 1.39080 * 120.00162 * 205.00221 * 11 8 6 13 13 C 1.38741 * 119.65418 * 359.97438 * 12 11 8 14 14 C 1.40780 * 118.66505 * 180.02562 * 13 12 11 15 15 C 1.41554 * 120.99068 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00354 * 26.43202 * 15 14 13 17 17 C 1.40030 * 119.99722 * 206.43907 * 15 14 13 18 18 N 1.30746 * 120.00042 * 14.21318 * 17 15 14 19 19 Si 1.86802 * 119.99894 * 194.21503 * 17 15 14 20 20 H 1.48501 * 109.47061 * 89.99891 * 19 17 15 21 21 H 1.48497 * 109.47028 * 209.99694 * 19 17 15 22 22 H 1.48503 * 109.46976 * 329.99751 * 19 17 15 23 23 C 1.41182 * 118.01513 * 359.97438 * 14 13 12 24 24 C 1.36557 * 119.14834 * 0.02562 * 23 14 13 25 25 N 1.32099 * 121.26565 * 359.71953 * 24 23 14 26 26 H 1.08999 * 109.47517 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46929 * 299.99796 * 1 2 3 28 28 H 1.09005 * 109.46894 * 59.99814 * 1 2 3 29 29 H 1.09009 * 109.47388 * 240.00170 * 2 1 3 30 30 H 1.08997 * 109.47419 * 120.00498 * 2 1 3 31 31 H 1.08995 * 109.47205 * 206.05587 * 4 3 2 32 32 H 1.08999 * 109.47035 * 326.05954 * 4 3 2 33 33 H 1.09001 * 109.46885 * 299.99705 * 5 4 3 34 34 H 1.09000 * 109.47441 * 60.00090 * 5 4 3 35 35 H 1.09003 * 109.47021 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.46475 * 172.95450 * 10 8 6 37 37 H 1.08995 * 109.47448 * 292.95601 * 10 8 6 38 38 H 1.08999 * 109.46792 * 52.96229 * 10 8 6 39 39 H 0.97008 * 119.99962 * 24.99987 * 11 8 6 40 40 H 1.07998 * 120.66992 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00081 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.42645 * 179.97438 * 23 14 13 43 43 H 1.08001 * 119.36676 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1984 2.0945 1.2670 5 6 3.5847 1.7835 1.8347 6 6 2.3020 1.9957 -1.1654 7 8 2.0768 1.4352 -2.2170 8 6 2.8990 3.3795 -1.1619 9 1 3.6214 3.4614 -0.3497 10 6 1.7888 4.4134 -0.9634 11 7 3.5716 3.6244 -2.4401 12 6 4.6051 4.5520 -2.5156 13 6 4.9931 5.2417 -1.3760 14 6 6.0412 6.1762 -1.4763 15 6 6.4763 6.9076 -0.3451 16 1 6.3450 6.4985 0.6457 17 6 7.0767 8.1617 -0.5108 18 7 6.9899 8.7816 -1.6587 19 14 8.0019 8.9491 0.9082 20 1 9.4276 8.5363 0.8593 21 1 7.9106 10.4272 0.7992 22 1 7.4031 8.5096 2.1941 23 6 6.6454 6.3622 -2.7387 24 6 6.1954 5.6370 -3.8047 25 7 5.2124 4.7642 -3.6743 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.1080 3.1671 1.0961 32 1 1.4352 1.7739 1.9760 33 1 3.6751 0.7108 2.0056 34 1 4.3480 2.1040 1.1257 35 1 3.7185 2.3138 2.7776 36 1 2.2312 5.4013 -0.8356 37 1 1.1360 4.4176 -1.8362 38 1 1.2086 4.1577 -0.0768 39 1 3.2960 3.1396 -3.2339 40 1 4.5004 5.0659 -0.4312 41 1 7.4062 9.6501 -1.7736 42 1 7.4525 7.0695 -2.8599 43 1 6.6548 5.7767 -4.7721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156364514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:34 Heat of formation + Delta-G solvation = -7.348342 kcal Electronic energy + Delta-G solvation = -23570.086841 eV Core-core repulsion = 20228.904984 eV Total energy + Delta-G solvation = -3341.181858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.29591 -38.39275 -36.36392 -35.39139 -33.93738 -32.31064 -30.79934 -30.36361 -29.38799 -27.51693 -25.86728 -24.68881 -23.79306 -22.44463 -21.42459 -20.61588 -18.88686 -17.93401 -16.93553 -16.70707 -15.67652 -15.39822 -15.02938 -14.82587 -14.24306 -14.11820 -14.02177 -13.75740 -13.44833 -13.29576 -12.78222 -12.77220 -12.66515 -12.36090 -12.34253 -12.04744 -11.97560 -11.83564 -11.53551 -11.34291 -11.19792 -11.16135 -11.08286 -10.81206 -10.27624 -9.82195 -9.64130 -9.43379 -9.02019 -8.81393 -7.94011 -7.88821 -6.81668 -6.47131 -4.56428 2.61084 2.79953 2.82475 3.03393 3.06277 3.06944 3.35874 3.87786 4.05453 4.44068 4.72559 4.74586 4.92737 4.94923 5.15672 5.17823 5.25497 5.29258 5.38823 5.45753 5.62258 5.67030 5.71451 5.77976 5.81596 5.96456 5.99967 6.10896 6.13705 6.39215 6.44437 6.72995 6.89291 6.90685 7.01550 7.23992 7.28447 7.55144 7.83763 8.06231 8.06816 8.16839 8.45887 8.72163 8.83310 8.90262 9.78774 10.14196 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.004101 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.476920 B = 6826.601571 C = 7799.988130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 N -0.614 5.614 4 C 0.096 3.904 5 C -0.175 4.175 6 C 0.516 3.484 7 O -0.534 6.534 8 C 0.148 3.852 9 H 0.101 0.899 10 C -0.165 4.165 11 N -0.728 5.728 12 C 0.401 3.599 13 C -0.336 4.336 14 C 0.159 3.841 15 C -0.459 4.459 16 H 0.079 0.921 17 C 0.079 3.921 18 N -0.788 5.788 19 Si 0.910 3.090 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.242 4.242 24 C 0.117 3.883 25 N -0.619 5.619 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.281 0.719 42 H 0.122 0.878 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -9.863 8.793 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.348 5.348 4 C -0.027 4.027 5 C -0.233 4.233 6 C 0.304 3.696 7 O -0.410 6.410 8 C 0.037 3.963 9 H 0.119 0.881 10 C -0.225 4.225 11 N -0.366 5.366 12 C 0.171 3.829 13 C -0.363 4.363 14 C 0.150 3.850 15 C -0.490 4.490 16 H 0.097 0.903 17 C -0.140 4.140 18 N -0.413 5.413 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.266 4.266 24 C -0.033 4.033 25 N -0.342 5.342 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.236 0.764 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.851 -10.393 7.527 15.588 hybrid contribution 0.591 0.808 1.172 1.541 sum -8.260 -9.584 8.699 15.354 Atomic orbital electron populations 1.22121 0.95987 1.02033 1.02334 1.21389 0.94301 0.82440 1.03046 1.48001 1.66318 1.14232 1.06255 1.21769 0.97816 0.98077 0.85031 1.22239 0.97177 1.02115 1.01811 1.20984 0.77264 0.88050 0.83290 1.90659 1.52593 1.66774 1.30925 1.20518 0.95373 0.90417 0.89967 0.88126 1.22312 0.98087 1.00367 1.01693 1.43892 1.37927 1.45928 1.08875 1.17877 0.86893 0.87902 0.90272 1.21150 1.07147 1.11301 0.96683 1.17589 0.86861 0.87673 0.92849 1.19556 1.34251 1.01109 0.94122 0.90314 1.25938 0.94124 0.97148 0.96835 1.69794 1.33491 1.13263 1.24745 0.86281 0.80413 0.78194 0.81634 1.19228 1.20255 1.18584 1.21777 1.05235 1.05491 0.94097 1.21383 0.92564 0.91919 0.97392 1.66735 1.16162 1.25932 1.25403 0.91766 0.92646 0.92164 0.89873 0.90744 0.89261 0.90295 0.92435 0.91716 0.91082 0.90087 0.91847 0.92040 0.76392 0.88452 0.90765 0.86001 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.11 1.10 6.15 -4.04 -0.02 1.08 16 3 N -0.61 -7.15 2.47 -173.68 -0.43 -7.58 16 4 C 0.10 0.87 5.68 -4.04 -0.02 0.84 16 5 C -0.18 -1.60 10.12 37.16 0.38 -1.22 16 6 C 0.52 7.95 6.90 -10.98 -0.08 7.88 16 7 O -0.53 -9.89 15.52 5.56 0.09 -9.80 16 8 C 0.15 2.40 1.82 -69.08 -0.13 2.28 16 9 H 0.10 1.61 4.61 -51.93 -0.24 1.37 16 10 C -0.17 -2.38 9.03 37.16 0.34 -2.05 16 11 N -0.73 -14.74 5.22 -55.11 -0.29 -15.03 16 12 C 0.40 9.56 7.63 -154.98 -1.18 8.37 16 13 C -0.34 -8.16 8.68 -38.44 -0.33 -8.50 16 14 C 0.16 4.19 5.58 -106.56 -0.59 3.60 16 15 C -0.46 -11.83 9.12 -37.65 -0.34 -12.17 16 16 H 0.08 1.93 7.89 -52.49 -0.41 1.51 16 17 C 0.08 1.92 5.23 -17.34 -0.09 1.83 16 18 N -0.79 -19.93 10.94 55.55 0.61 -19.32 16 19 Si 0.91 18.03 29.58 -169.99 -5.03 13.00 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.24 -6.33 8.72 -39.07 -0.34 -6.67 16 24 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16 25 N -0.62 -15.61 10.37 -12.82 -0.13 -15.74 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.97 7.40 -51.92 -0.38 0.59 16 30 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.09 0.82 4.70 -51.93 -0.24 0.57 16 32 H 0.08 0.54 8.10 -51.93 -0.42 0.11 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.74 7.26 -51.93 -0.38 0.36 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.29 7.60 -51.93 -0.39 0.90 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.69 6.35 -51.93 -0.33 0.36 16 39 H 0.40 8.33 7.87 -40.82 -0.32 8.01 16 40 H 0.10 2.15 5.98 -52.49 -0.31 1.83 16 41 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 42 H 0.12 3.24 6.29 -52.49 -0.33 2.91 16 43 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -30.41 348.77 -8.45 -38.87 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.28 Total: 13.45 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.24 Total: -3.10 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.24 Total: -57.67 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.41 -8.45 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156364514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.520 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds